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L3_072_000M1_scaffold_80

Search features with annotation key words

Displaying items 1-30 of 155 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_80_1
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(297..1205)
DNA (909bp) protein (303aa)
Ornithine carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174}; Short=OTCase {ECO:0000256|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174};; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
ornithine carbamoyltransferase (EC:2.1.3.3)
Ornithine carbamoyltransferase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2MAK2_9FIRM
L3_072_000M1_scaffold_80_2
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1266..1745)
DNA (480bp) protein (160aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4LFE5_RUMC1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL18340.1}; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
L3_072_000M1_scaffold_80_3
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1795..2961)
DNA (1167bp) protein (389aa)
Acetylornithine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01107}; Short=ACOAT {ECO:0000256|HAMAP-Rule:MF_01107};; EC=2.6.1.11 {ECO:0000256|HAMAP-Rule:MF_01107};; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
argD; Acetylornithine/N-succinyldiaminopimelate aminotransferase (EC:2.6.1.17)
Acetylornithine aminotransferase n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MQE8_9FIRM
L3_072_000M1_scaffold_80_4
unknown

Not on your lists

comp(2983..3561)
DNA (579bp) protein (193aa)

This feature has no annotations

L3_072_000M1_scaffold_80_5
Ruminococcus sp. CAG:379, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3565..4425)
DNA (861bp) protein (287aa)
N-acetylglutamate kinase (EC:2.7.2.8)
Acetylglutamate kinase {ECO:0000256|HAMAP-Rule:MF_00082, ECO:0000256|SAAS:SAAS00245375}; EC=2.7.2.8 {ECO:0000256|HAMAP-Rule:MF_00082, ECO:0000256|SAAS:SAAS00245383};; N-acetyl-L-glutamate 5-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00082}; NAG kinase {ECO:0000256|HAMAP-Rule:MF_00082}; TaxID=1262956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:379.;"
Acetylglutamate kinase n=2 Tax=Ruminococcus RepID=D4LFE3_RUMC1
L3_072_000M1_scaffold_80_6
unknown

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comp(4457..5074)
DNA (618bp) protein (206aa)

This feature has no annotations

L3_072_000M1_scaffold_80_7
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5099..6082)
DNA (984bp) protein (328aa)
N-acetyl-gamma-glutamyl-phosphate reductase {ECO:0000256|HAMAP-Rule:MF_01110}; Short=AGPR {ECO:0000256|HAMAP-Rule:MF_01110};; EC=1.2.1.38 {ECO:0000256|HAMAP-Rule:MF_01110};; N-acetyl-glutamate semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01110}; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38)
N-acetyl-gamma-glutamyl-phosphate reductase n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C37D5F
L3_072_000M1_scaffold_80_8
unknown

Not on your lists

comp(6091..6279)
DNA (189bp) protein (63aa)

This feature has no annotations

L3_072_000M1_scaffold_80_9
Ruminococcus sp. CAG:379, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6286..7662)
DNA (1377bp) protein (459aa)
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211019}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211017};; Arginosuccinase {ECO:0000256|HAMAP-Rule:MF_00006}; TaxID=1262956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:379.;"
argininosuccinate lyase (EC:4.3.2.1)
Argininosuccinate lyase n=1 Tax=Ruminococcus sp. CAG:379 RepID=R7ABS3_9FIRM
L3_072_000M1_scaffold_80_10
Ehrlichia ruminantium, Ehrlichia, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7732..8295)
DNA (564bp) protein (188aa)
Putative uncharacterized protein n=1 Tax=Ehrlichia ruminantium (strain Gardel) RepID=Q5FGL3_EHRRG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAI28325.1}; TaxID=302409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Anaplasmataceae; Ehrlichia.;" source="Ehrlichia ruminantium (strain Gardel).;"
L3_072_000M1_scaffold_80_11
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8458..9687)
DNA (1230bp) protein (410aa)
Argininosuccinate synthase {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00013047}; EC=6.3.4.5 {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00009947};; Citrulline--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00005}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
argininosuccinate synthase (EC:6.3.4.5)
Argininosuccinate synthase n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MPU6_9FIRM
L3_072_000M1_scaffold_80_12
unknown

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comp(9968..10894)
DNA (927bp) protein (309aa)

This feature has no annotations

L3_072_000M1_scaffold_80_13
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10929..12959)
DNA (2031bp) protein (677aa)
recG; ATP-dependent DNA helicase RecG (EC:3.6.1.-)
ATP-dependent DNA helicase RecG {ECO:0000313|EMBL:CCO05974.1}; EC=3.6.1.- {ECO:0000313|EMBL:CCO05974.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
ATP-dependent DNA helicase RecG n=1 Tax=Ruminococcus flavefaciens RepID=UPI0002EDE16D
L3_072_000M1_scaffold_80_14
Eubacterium sp. CAG:115, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13246..13455
DNA (210bp) protein (70aa)
Uncharacterized conserved protein n=1 Tax=Eubacterium sp. CAG:115 RepID=R5L1T0_9FIRM
Uncharacterized conserved protein {ECO:0000313|EMBL:CCY73018.1}; TaxID=1262878 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:115.;"
hypothetical protein
L3_072_000M1_scaffold_80_15
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13762..14619
DNA (858bp) protein (286aa)
Helix-hairpin-helix motif protein n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7H2H4_9FIRM
Helix-hairpin-helix motif protein {ECO:0000313|EMBL:CDE33516.1}; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
helix-turn-helix domain-containing protein
L3_072_000M1_scaffold_80_16
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14726..15256
DNA (531bp) protein (177aa)
Transcriptional regulator, AbrB family n=2 Tax=Ruminococcus RepID=D4LAU5_RUMC1
transcriptional regulator, AbrB family
Transcriptional regulator, AbrB family {ECO:0000313|EMBL:CBL16740.1}; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
L3_072_000M1_scaffold_80_17
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15656..17803
DNA (2148bp) protein (716aa)
Polyphosphate kinase {ECO:0000256|RuleBase:RU003800, ECO:0000256|SAAS:SAAS00008191}; EC=2.7.4.1 {ECO:0000256|RuleBase:RU003800, ECO:0000256|SAAS:SAAS00008191};; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
Polyphosphate kinase (EC:2.7.4.1)
Polyphosphate kinase n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MKT9_9FIRM
L3_072_000M1_scaffold_80_18
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17862..18296)
DNA (435bp) protein (145aa)
Fucose dissimilation pathway protein FucU (EC:5.1.3.-)
Fucose operon FucU protein n=1 Tax=Clostridium sp. D5 RepID=F0Z0J5_9CLOT
Fucose operon FucU protein {ECO:0000313|EMBL:EGB92616.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
L3_072_000M1_scaffold_80_19
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18548..18991
DNA (444bp) protein (148aa)
Transcriptional regulator BadM/Rrf2 family n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SY70_9FIRM
Transcriptional regulator, Rrf2 family
Transcriptional regulator, Rrf2 family {ECO:0000313|EMBL:CCO05510.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_072_000M1_scaffold_80_20
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19036..20280)
DNA (1245bp) protein (415aa)
Uncharacterized protein conserved in bacteria n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MKD7_9FIRM
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CDF00408.1}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
hypothetical protein
L3_072_000M1_scaffold_80_21
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20306..23275)
DNA (2970bp) protein (990aa)
2-hydroxyglutaryl-CoA dehydratase n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C374D5
CoA-substrate-specific enzyme activase putative {ECO:0000313|EMBL:CDF00407.1}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
putative CoA-substrate-specific enzyme activase
L3_072_000M1_scaffold_80_22
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23512..24297
DNA (786bp) protein (262aa)
Metallophosphoesterase n=6 Tax=Clostridium thermocellum RepID=A3DGN7_CLOTH
metallophosphoesterase
Metallophosphoesterase {ECO:0000313|EMBL:ABN53116.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
L3_072_000M1_scaffold_80_23
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24338..24940)
DNA (603bp) protein (201aa)
Recombination protein RecR n=1 Tax=Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO 2250 / 7) RepID=E6UDZ2_RUMA7
recombination protein RecR
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; TaxID=697329 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO; 2250 / 7).;"
L3_072_000M1_scaffold_80_24
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24954..25304)
DNA (351bp) protein (117aa)
hypothetical protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C37DC9
Nucleoid-associated protein RF007C_10180 {ECO:0000256|HAMAP-Rule:MF_00274}; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
conserved hypothetical protein TIGR00103
L3_072_000M1_scaffold_80_25
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25351..26988)
DNA (1638bp) protein (546aa)
DNA polymerase III, subunits gamma and tau (EC:2.7.7.7)
DNA polymerase III, subunits gamma and tau {ECO:0000313|EMBL:CBL18247.1}; EC=2.7.7.7 {ECO:0000313|EMBL:CBL18247.1};; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
DNA polymerase III, subunits gamma and tau n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4LF52_RUMC1
L3_072_000M1_scaffold_80_26
Plasmodium inui, Plasmodium, Haemosporida, Aconoidasida, Apicomplexa, Eukaryota

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27348..28187
DNA (840bp) protein (280aa)
Predicted outer membrane protein n=1 Tax=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) RepID=Q03HZ0_PEDPA
scm; collagen-binding MSCRAMM Scm (Fms10)
Uncharacterized protein {ECO:0000313|EMBL:EUD68125.1}; TaxID=1237626 species="Eukaryota; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Plasmodium).;" source="Plasmodium inui San Antonio 1.;"
L3_072_000M1_scaffold_80_27
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28432..29862
DNA (1431bp) protein (477aa)
ABC transporter, solute-binding protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M3J9_9FIRM
ABC transporter, solute-binding protein {ECO:0000313|EMBL:ERJ96324.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
hypothetical protein
L3_072_000M1_scaffold_80_28
Butyrivibrio sp. CAG:318, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30113..32509)
DNA (2397bp) protein (799aa)
chitobiose phosphorylase (EC:2.4.1.-)
Putative carbohydrate-active enzyme n=1 Tax=Butyrivibrio sp. CAG:318 RepID=R6RZP6_9FIRM
Putative carbohydrate-active enzyme {ECO:0000313|EMBL:CDC39862.1}; TaxID=1262761 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio; environmental samples.;" source="Butyrivibrio sp. CAG:318.;"
L3_072_000M1_scaffold_80_29
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32915..33169
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MRD2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDF02916.1}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
L3_072_000M1_scaffold_80_30
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33324..33800
DNA (477bp) protein (159aa)
Ribosome maturation factor RimP n=1 Tax=Ruminococcus sp. CAG:330 RepID=R7F8Y3_9FIRM
hypothetical protein
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
Displaying items 1-30 of 155 in total

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