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L3_072_000M1_scaffold_140

Search features with annotation key words

Displaying items 1-30 of 87 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_140_1
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3..299)
DNA (297bp) protein (99aa)
Integrase core domain protein (Fragment) n=1 Tax=Ruminococcus torques ATCC 27756 RepID=A5KPW0_9FIRM
Integrase core domain protein {ECO:0000313|EMBL:EDK23614.1}; Flags: Fragment;; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
integrase catalytic subunit
L3_072_000M1_scaffold_140_2
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(368..703)
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZJT9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFQ06556.1}; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
L3_072_000M1_scaffold_140_3
Campylobacter jejuni, Campylobacter, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

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comp(734..1147)
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Campylobacter jejuni RepID=Q4VR88_CAMJU
transposase
Uncharacterized protein {ECO:0000313|EMBL:AAW34156.1}; TaxID=197 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter.;" source="Campylobacter jejuni.;"
L3_072_000M1_scaffold_140_4
Megamonas funiformis CAG:377, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(1119..1283)
DNA (165bp) protein (55aa)
Transposase (Fragment) n=1 Tax=human gut metagenome RepID=K1TBF9_9ZZZZ
transposase
Transposase-like protein {ECO:0000313|EMBL:CDB98413.1}; TaxID=1263086 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas; environmental samples.;" source="Megamonas funiformis CAG:377.;"
L3_072_000M1_scaffold_140_5
Clostridium sp. CAG:964, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1584..2900
DNA (1317bp) protein (439aa)
Phosphomethylpyrimidine synthase {ECO:0000256|HAMAP-Rule:MF_00089}; EC=4.1.99.17 {ECO:0000256|HAMAP-Rule:MF_00089};; Hydroxymethylpyrimidine phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00089}; Thiamine biosynthesis protein ThiC {ECO:0000256|HAMAP-Rule:MF_00089}; TaxID=1262848 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:964.;"
Phosphomethylpyrimidine synthase n=1 Tax=Clostridium sp. CAG:964 RepID=R6UDZ9_9CLOT
thiamine biosynthesis protein ThiC
L3_072_000M1_scaffold_140_6
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

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2973..3602
DNA (630bp) protein (210aa)
Thiamine-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; Short=TP synthase {ECO:0000256|HAMAP-Rule:MF_00097};; Short=TPS {ECO:0000256|HAMAP-Rule:MF_00097};; EC=2.5.1.3 {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826};; Thiamine-phosphate pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
Thiamine-phosphate synthase n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MM99_9FIRM
thiamin-phosphate pyrophosphorylase
L3_072_000M1_scaffold_140_7
Anaerofustis stercorihominis, Anaerofustis, Clostridiales, Clostridia, Firmicutes, Bacteria

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3618..4391
DNA (774bp) protein (258aa)
Phosphomethylpyrimidine kinase {ECO:0000313|EMBL:EDS72937.1}; EC=2.7.4.7 {ECO:0000313|EMBL:EDS72937.1};; TaxID=445971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Anaerofustis.;" source="Anaerofustis stercorihominis DSM 17244.;"
phosphomethylpyrimidine kinase (EC:2.7.4.7)
Phosphomethylpyrimidine kinase n=1 Tax=Coprobacillus sp. 29_1 RepID=E7GAN1_9FIRM
L3_072_000M1_scaffold_140_8
Lachnospiraceae bacterium COE1, Clostridiales, Clostridia, Firmicutes, Bacteria

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4436..4813
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium COE1 RepID=R9L098_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS51963.1}; TaxID=1235793 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium COE1.;"
hypothetical protein
L3_072_000M1_scaffold_140_9
Lachnospiraceae bacterium A4, Clostridiales, Clostridia, Firmicutes, Bacteria

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4823..5485
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium A4 RepID=R9J2B7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS25342.1}; TaxID=397291 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A4.;"
hypothetical protein, probable phosphatase
L3_072_000M1_scaffold_140_10
GWF2_Clostridiales_38_85_curated, Clostridiales, Bacteria

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5623..6480
DNA (858bp) protein (286aa)
Hydrolase, alpha/beta domain protein id=4491197 bin=GWF2_Clostridiales_38_85 species=Clostridium leptum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Clostridiales_38_85 organism_group=Firmicute organism_desc=a212
putative carboxylesterase or lipase
Tax=GWF2_Clostridiales_38_85_curated
L3_072_000M1_scaffold_140_11
GWF2_Clostridiales_38_85_curated, Clostridiales, Bacteria

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6500..7870
DNA (1371bp) protein (457aa)
Putative uncharacterized protein id=4491196 bin=GWF2_Clostridiales_38_85 species=Cellulosilyticum lentocellum genus=Cellulosilyticum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Clostridiales_38_85 organism_group=Firmicute organism_desc=a212
hypothetical protein
Tax=GWF2_Clostridiales_38_85_curated
L3_072_000M1_scaffold_140_12
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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7883..8542
DNA (660bp) protein (220aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7KXR5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE81180.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
hypothetical protein
L3_072_000M1_scaffold_140_13
unknown

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8645..8962
DNA (318bp) protein (106aa)

This feature has no annotations

L3_072_000M1_scaffold_140_14
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9015..9692)
DNA (678bp) protein (226aa)
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1 {ECO:0000256|SAAS:SAAS00035231}; EC=3.2.2.9 {ECO:0000256|SAAS:SAAS00035196};; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase {ECO:0000256|SAAS:SAAS00035261}; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2 {ECO:0000256|SAAS:SAAS00035188}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase (EC:3.2.2.9)
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7ML63_9FIRM
L3_072_000M1_scaffold_140_15
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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10273..11448
DNA (1176bp) protein (392aa)
sfcA; Malate dehydrogenase (oxaloacetate-decarboxylating) (EC:1.1.1.38)
NAD-dependent malic enzyme n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T2E4_9FIRM
NAD-dependent malic enzyme {ECO:0000313|EMBL:CDC66380.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_072_000M1_scaffold_140_16
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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11608..11868
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7GX35_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE31263.1}; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
hypothetical protein
L3_072_000M1_scaffold_140_17
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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11939..12652
DNA (714bp) protein (238aa)
Uncharacterized conserved protein n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MPY4_9FIRM
Uncharacterized conserved protein {ECO:0000313|EMBL:CDF02013.1}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
hypothetical protein
L3_072_000M1_scaffold_140_18
Ruminococcus sp. CAG:330, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12706..13920)
DNA (1215bp) protein (405aa)
Isocitrate dehydrogenase [NADP] {ECO:0000256|PIRNR:PIRNR000108}; EC=1.1.1.42 {ECO:0000256|PIRNR:PIRNR000108};; TaxID=1262954 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:330.;"
isocitrate dehydrogenase, NADP-dependent, eukaryotic type (EC:1.1.1.42)
Isocitrate dehydrogenase [NADP] n=1 Tax=Ruminococcus sp. CAG:330 RepID=R7FAH5_9FIRM
L3_072_000M1_scaffold_140_19
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13978..14682)
DNA (705bp) protein (235aa)
Gp114 n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MTF5_9FIRM
Gp114 {ECO:0000313|EMBL:CDF03127.1}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
hypothetical protein
L3_072_000M1_scaffold_140_20
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14872..15330)
DNA (459bp) protein (153aa)
septicolysin n=1 Tax=Clostridium botulinum RepID=UPI0002EC39B9
septicolysin
Putative septicolysin-like protein {ECO:0000313|EMBL:CDH91988.1}; Septicolysin {ECO:0000313|EMBL:ACD21932.1}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
L3_072_000M1_scaffold_140_21
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15409..17352)
DNA (1944bp) protein (648aa)
Aconitase n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MRX5_9FIRM
Aconitase {ECO:0000313|EMBL:CDF03126.1}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
aconitate hydratase
L3_072_000M1_scaffold_140_22
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17552..18577)
DNA (1026bp) protein (342aa)
hypothetical protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI0002FDF486
Uncharacterized protein {ECO:0000313|EMBL:EWM53839.1}; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
DNA replication protein
L3_072_000M1_scaffold_140_23
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18602..19564)
DNA (963bp) protein (321aa)
DnaD domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6THW0_9FIRM
DnaD domain protein {ECO:0000313|EMBL:CDC67441.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
DnaD domain protein
L3_072_000M1_scaffold_140_24
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19586..21271)
DNA (1686bp) protein (562aa)
DNA repair protein RecN n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MMK2_9FIRM
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
recN; DNA repair protein RecN
L3_072_000M1_scaffold_140_25
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21271..21735)
DNA (465bp) protein (155aa)
Arginine repressor n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T418_9FIRM
Arginine repressor {ECO:0000256|HAMAP-Rule:MF_00173}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
argR; Arginine repressor
L3_072_000M1_scaffold_140_26
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21756..22601)
DNA (846bp) protein (282aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
Predicted sugar kinase (EC:2.7.1.23)
Probable inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7GWT7_9FIRM
L3_072_000M1_scaffold_140_27
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22608..23336)
DNA (729bp) protein (243aa)
Hemolysin TlyA family protein n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MLF5_9FIRM
hemolysin TlyA family protein
Hemolysin TlyA family protein {ECO:0000313|EMBL:CBL34588.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L3_072_000M1_scaffold_140_28
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(23326..25209)
DNA (1884bp) protein (628aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7)
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MKT4_9FIRM
L3_072_000M1_scaffold_140_29
Ruminococcus sp. CAG:379, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(25250..25696)
DNA (447bp) protein (149aa)
Uncharacterized protein conserved in bacteria n=1 Tax=Ruminococcus sp. CAG:379 RepID=R7AH30_9FIRM
hypothetical protein
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CDD52711.1}; TaxID=1262956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:379.;"
L3_072_000M1_scaffold_140_30
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25727..26620)
DNA (894bp) protein (298aa)
farnesyl-diphosphate synthase (EC:2.5.1.10 2.5.1.29)
hypothetical protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI0002DC8D02
Uncharacterized protein {ECO:0000313|EMBL:EWM53498.1}; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
Displaying items 1-30 of 87 in total

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