ggKbase home page

L3_072_000M1_scaffold_55

Search features with annotation key words

Displaying items 1-30 of 108 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_55_1
Eubacterium sp. CAG:841, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(391..1392)
DNA (1002bp) protein (334aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:841 RepID=R7FT93_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE18524.1}; TaxID=1262894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:841.;"
hypothetical protein
L3_072_000M1_scaffold_55_2
Clostridium sp. CAG:448, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1412..2119)
DNA (708bp) protein (236aa)
NifU homolog involved in Fe-S cluster formation n=1 Tax=Clostridium sp. CAG:448 RepID=R6TP04_9CLOT
NifU homolog involved in Fe-S cluster formation {ECO:0000313|EMBL:CDC60392.1}; TaxID=1262808 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:448.;"
NifU homolog involved in Fe-S cluster formation
L3_072_000M1_scaffold_55_3
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2378..3859)
DNA (1482bp) protein (494aa)
Glycerol kinase {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376}; EC=2.7.1.30 {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376};; ATP:glycerol 3-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00186}; Glycerokinase {ECO:0000256|HAMAP-Rule:MF_00186}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
glpK; glycerol kinase (EC:2.7.1.30)
Glycerol kinase n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HWP6_9FIRM
L3_072_000M1_scaffold_55_4
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3898..4368)
DNA (471bp) protein (157aa)
ppiD; Peptidyl-prolyl cis-trans isomerase (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493, ECO:0000313|EMBL:CCO05157.1}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493, ECO:0000313|EMBL:CCO05157.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZP9_9FIRM
L3_072_000M1_scaffold_55_5
Firmicutes bacterium CAG:272, Firmicutes, Bacteria

Not on your lists

5124..5504
DNA (381bp) protein (127aa)
Uncharacterized protein conserved in bacteria n=1 Tax=Firmicutes bacterium CAG:272 RepID=R6TF09_9FIRM
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CDC70835.1}; TaxID=1263015 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:272.;"
hypothetical protein
L3_072_000M1_scaffold_55_6
Frateuria aurantia, Frateuria, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5547..6467
DNA (921bp) protein (307aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=767434 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Frateuria.;" source="Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB; 13370) (Acetobacter aurantius).;"
Riboflavin kinase/FMN adenylyltransferase n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8KYE9_FRAAD
riboflavin kinase/FMN adenylyltransferase
L3_072_000M1_scaffold_55_7
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6513..8261
DNA (1749bp) protein (583aa)
Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:EDM99713.1}; EC=3.4.16.4 {ECO:0000313|EMBL:EDM99713.1};; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4)
Serine-type D-Ala-D-Ala carboxypeptidase n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NW56_9FIRM
L3_072_000M1_scaffold_55_8
Ruminococcus sp. CAG:724, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8331..9317
DNA (987bp) protein (329aa)
holB; DNA polymerase III subunit delta' (EC:2.7.7.7)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5PY89_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ21203.1}; TaxID=1262966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:724.;"
L3_072_000M1_scaffold_55_9
Firmicutes bacterium CAG:272, Firmicutes, Bacteria

Not on your lists

9335..11005
DNA (1671bp) protein (557aa)
Putative PSP1-like protein n=1 Tax=Firmicutes bacterium CAG:272 RepID=R6TY18_9FIRM
Putative PSP1-like protein {ECO:0000313|EMBL:CDC74744.1}; TaxID=1263015 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:272.;"
hypothetical protein
L3_072_000M1_scaffold_55_10
Eubacterium sp. CAG:841, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11539..12579
DNA (1041bp) protein (347aa)
Primosome DnaD subunit n=1 Tax=Eubacterium sp. CAG:841 RepID=R7FYW6_9FIRM
Primosome DnaD subunit {ECO:0000313|EMBL:CDE18882.1}; TaxID=1262894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:841.;"
primosome subunit DnaD
L3_072_000M1_scaffold_55_11
Anaerotruncus sp. CAG:390, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12733..13701
DNA (969bp) protein (323aa)
Putative DNA replication protein DnaC n=1 Tax=Anaerotruncus sp. CAG:390 RepID=R7EME2_9FIRM
Putative DNA replication protein DnaC {ECO:0000313|EMBL:CDE03800.1}; TaxID=1262703 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:390.;"
DNA replication protein
L3_072_000M1_scaffold_55_12
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13722..14237
DNA (516bp) protein (172aa)
Dihydrofolate reductase {ECO:0000256|PIRNR:PIRNR000194}; EC=1.5.1.3 {ECO:0000256|PIRNR:PIRNR000194};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Dihydrofolate reductase (EC:1.5.1.3)
Dihydrofolate reductase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XA26_9FIRM
L3_072_000M1_scaffold_55_13
unknown

Not on your lists

comp(14395..14661)
DNA (267bp) protein (89aa)

This feature has no annotations

L3_072_000M1_scaffold_55_14
Clostridium sp. CAG:590, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14711..15490
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:590 RepID=R5EAT5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX85256.1}; TaxID=1262825 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:590.;"
peptidoglycan N-acetylglucosamine deacetylase
L3_072_000M1_scaffold_55_15
unknown

Not on your lists

comp(15573..15689)
DNA (117bp) protein (39aa)

This feature has no annotations

L3_072_000M1_scaffold_55_16
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16812..17693
DNA (882bp) protein (294aa)
Phosphate ABC transporter phosphate-binding protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6W7E8_9FIRM
Phosphate ABC transporter phosphate-binding protein {ECO:0000313|EMBL:CDD02684.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
pstS2; Phosphate-binding protein pstS 2
L3_072_000M1_scaffold_55_17
Clostridium sp. CAG:448, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17706..18614
DNA (909bp) protein (303aa)
Phosphate ABC transporter permease protein PstC n=1 Tax=Clostridium sp. CAG:448 RepID=R6SRT3_9CLOT
Phosphate ABC transporter permease protein PstC {ECO:0000313|EMBL:CDC63938.1}; TaxID=1262808 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:448.;"
phosphate ABC transporter membrane protein 1, PhoT family (TC 3.A.1.7.1)
L3_072_000M1_scaffold_55_18
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18601..19467
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6X8J5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD02687.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
phosphate ABC transporter membrane protein 2, PhoT family (TC 3.A.1.7.1)
L3_072_000M1_scaffold_55_19
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19464..20249
DNA (786bp) protein (262aa)
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01702}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
phosphate ABC transporter ATP-binding protein, PhoT family (TC 3.A.1.7.1) (EC:3.6.3.27)
Phosphate ABC transporter ATP-binding protein PhoT family (TC 3.A.1.7.1) n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6VVD4_9FIRM
L3_072_000M1_scaffold_55_20
Clostridium sp. CAG:448, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20323..20976
DNA (654bp) protein (218aa)
Phosphate-specific transport system accessory protein PhoU n=1 Tax=Clostridium sp. CAG:448 RepID=R6SVC2_9CLOT
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=1262808 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:448.;"
phosphate uptake regulator, PhoU
L3_072_000M1_scaffold_55_21
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

Not on your lists

comp(21257..22693)
DNA (1437bp) protein (479aa)
Probable glycine dehydrogenase (decarboxylating) subunit 2 {ECO:0000256|HAMAP-Rule:MF_00713}; EC=1.4.4.2 {ECO:0000256|HAMAP-Rule:MF_00713};; Glycine cleavage system P-protein subunit 2 {ECO:0000256|HAMAP-Rule:MF_00713}; Glycine decarboxylase subunit 2 {ECO:0000256|HAMAP-Rule:MF_00713}; Glycine dehydrogenase (aminomethyl-transferring) subunit 2 {ECO:0000256|HAMAP-Rule:MF_00713}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
gcvPB; putative glycine dehydrogenase [decarboxylating] subunit 2 (EC:1.4.4.2)
Probable glycine dehydrogenase (decarboxylating) subunit 2 n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IUT3_9FIRM
L3_072_000M1_scaffold_55_22
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

comp(22690..24000)
DNA (1311bp) protein (437aa)
Probable glycine dehydrogenase (decarboxylating) subunit 1 {ECO:0000256|HAMAP-Rule:MF_00712, ECO:0000256|SAAS:SAAS00015358}; EC=1.4.4.2 {ECO:0000256|HAMAP-Rule:MF_00712, ECO:0000256|SAAS:SAAS00022796};; Glycine cleavage system P-protein subunit 1 {ECO:0000256|HAMAP-Rule:MF_00712}; Glycine decarboxylase subunit 1 {ECO:0000256|HAMAP-Rule:MF_00712}; Glycine dehydrogenase (aminomethyl-transferring) subunit 1 {ECO:0000256|HAMAP-Rule:MF_00712}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
gcvPA; glycine cleavage system P protein subunit 1 (EC:1.4.4.2)
Probable glycine dehydrogenase [decarboxylating] subunit 1 n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LX91_9FIRM
L3_072_000M1_scaffold_55_23
Phascolarctobacterium sp. CAG:266, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(24121..24498)
DNA (378bp) protein (126aa)
Glycine cleavage system H protein n=1 Tax=Phascolarctobacterium sp. CAG:266 RepID=R6HPV7_9FIRM
Glycine cleavage system H protein {ECO:0000256|HAMAP-Rule:MF_00272}; TaxID=1262915 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium sp. CAG:266.;"
gcvH; glycine cleavage system protein H
L3_072_000M1_scaffold_55_24
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24542..25816)
DNA (1275bp) protein (425aa)
Aminomethyltransferase {ECO:0000256|HAMAP-Rule:MF_00259, ECO:0000256|RuleBase:RU003981}; EC=2.1.2.10 {ECO:0000256|HAMAP-Rule:MF_00259, ECO:0000256|RuleBase:RU003981};; Glycine cleavage system T protein {ECO:0000256|HAMAP-Rule:MF_00259}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
aminomethyltransferase (EC:2.1.2.10)
Aminomethyltransferase n=1 Tax=Clostridium sp. CAG:242 RepID=R6DLM8_9CLOT
L3_072_000M1_scaffold_55_25
unknown

Not on your lists

25955..26185
DNA (231bp) protein (77aa)

This feature has no annotations

L3_072_000M1_scaffold_55_26
Anaerotruncus sp. CAG:390, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26311..27285)
DNA (975bp) protein (325aa)
Germination protease {ECO:0000256|HAMAP-Rule:MF_00626}; EC=3.4.24.78 {ECO:0000256|HAMAP-Rule:MF_00626};; GPR endopeptidase {ECO:0000256|HAMAP-Rule:MF_00626}; Germination proteinase {ECO:0000256|HAMAP-Rule:MF_00626}; Spore protease {ECO:0000256|HAMAP-Rule:MF_00626}; TaxID=1262703 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:390.;"
Germination protease n=1 Tax=Anaerotruncus sp. CAG:390 RepID=R7EPL4_9FIRM
peptidase
L3_072_000M1_scaffold_55_27
Firmicutes bacterium CAG:272, Firmicutes, Bacteria

Not on your lists

27467..29518
DNA (2052bp) protein (684aa)
Extracellular solute-binding protein family 5 n=1 Tax=Firmicutes bacterium CAG:272 RepID=R6TBL7_9FIRM
Extracellular solute-binding protein family 5 {ECO:0000313|EMBL:CDC70803.1}; TaxID=1263015 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:272.;"
oligopeptide ABC transporter periplasmic protein
L3_072_000M1_scaffold_55_28
Firmicutes bacterium CAG:272, Firmicutes, Bacteria

Not on your lists

29596..30159
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:272 RepID=R6TM14_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC70799.1}; TaxID=1263015 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:272.;"
L3_072_000M1_scaffold_55_29
Firmicutes bacterium CAG:272, Firmicutes, Bacteria

Not on your lists

30328..30933
DNA (606bp) protein (202aa)
RNA polymerase sigma-H factor n=1 Tax=Firmicutes bacterium CAG:272 RepID=R6UJ20_9FIRM
RNA polymerase sigma-H factor {ECO:0000313|EMBL:CDC70797.1}; TaxID=1263015 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:272.;"
RNA polymerase sigma factor, sigma-70 family
L3_072_000M1_scaffold_55_30
Ruminococcus sp. CAG:724, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31109..31384
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5QD77_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ20221.1}; TaxID=1262966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:724.;"
hypothetical protein
Displaying items 1-30 of 108 in total

View Taxonomy