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L3_072_011G1_scaffold_33

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Displaying items 1-30 of 59 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_011G1_scaffold_33_1
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(212..2785)
DNA (2574bp) protein (858aa)
Chaperone protein ClpB n=1107 Tax=Enterobacteriaceae RepID=CLPB_ECO57
clpB; protein disaggregation chaperone
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=1446580 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O123:H11 str. 2009C-3307.;"
L3_072_011G1_scaffold_33_2
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2915..3646)
DNA (732bp) protein (244aa)
Uncharacterized protein n=48 Tax=Escherichia coli RepID=B3HZ32_ECOLX
hypothetical protein
Laccase domain protein {ECO:0000256|RuleBase:RU361274}; TaxID=1181728 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE182.;"
L3_072_011G1_scaffold_33_3
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3643..4623)
DNA (981bp) protein (327aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=42897 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 2a.;"
Ribosomal large subunit pseudouridine synthase D n=389 Tax=Enterobacteriaceae RepID=RLUD_ECOL6
rluD; 23S rRNA pseudouridine synthase D
L3_072_011G1_scaffold_33_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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4758..5495
DNA (738bp) protein (246aa)
Outer membrane protein assembly factor BamD n=25 Tax=Escherichia coli RepID=Q0TEP2_ECOL5
outer membrane protein assembly complex subunit YfiO
Outer membrane protein assembly factor BamD {ECO:0000256|HAMAP-Rule:MF_00922}; Flags: Precursor;; TaxID=1444266 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-427-07_S4_C3.;"
L3_072_011G1_scaffold_33_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5765..6106
DNA (342bp) protein (114aa)
Ribosome-associated inhibitor A n=1346 Tax=Enterobacteriaceae RepID=RAIA_ECO57
raiA; translation inhibitor protein RaiA
Stationary phase translation inhibitor and ribosome stability factor {ECO:0000313|EMBL:EHU08020.1}; TaxID=868135 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC1C.;"
L3_072_011G1_scaffold_33_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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6356..7516
DNA (1161bp) protein (387aa)
pheA; bifunctional chorismate mutase/prephenate dehydratase (EC:4.2.1.51 5.4.99.5)
Fused chorismate mutase P prephenate dehydratase n=236 Tax=Escherichia RepID=B7MIT7_ECO45
P-protein {ECO:0000313|EMBL:EQX25359.1}; TaxID=1281200 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain UMEA 3162-1).;"
L3_072_011G1_scaffold_33_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7559..8680)
DNA (1122bp) protein (374aa)
tyrA; bifunctional chorismate mutase/prephenate dehydrogenase (EC:1.3.1.12 5.4.99.5)
T-protein n=20 Tax=Escherichia coli RepID=Q0TEN9_ECOL5
T-protein {ECO:0000256|PIRNR:PIRNR001499}; TaxID=364106 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain UTI89 / UPEC).;"
L3_072_011G1_scaffold_33_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8691..9761)
DNA (1071bp) protein (357aa)
aroF; 3-deoxy-7-phosphoheptulonate synthase (EC:2.5.1.54)
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; EC=2.5.1.54 {ECO:0000256|PIRNR:PIRNR001361};; 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase {ECO:0000256|PIRNR:PIRNR001361}; DAHP synthase {ECO:0000256|PIRNR:PIRNR001361}; Phospho-2-keto-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; TaxID=1281011 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 70 (4-2963531).;"
Phospho-2-dehydro-3-deoxyheptonate aldolase n=417 Tax=Enterobacteriaceae RepID=E2QQ58_ECOLX
L3_072_011G1_scaffold_33_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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9971..10336
DNA (366bp) protein (122aa)
Lipoprotein n=27 Tax=Escherichia coli RepID=K0TWS9_ECOLX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ESD35413.1}; TaxID=1268991 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 908519.;"
L3_072_011G1_scaffold_33_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10485..11003
DNA (519bp) protein (173aa)
Uncharacterized protein yfiR n=346 Tax=Escherichia RepID=E2QQ60_ECOLX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EZJ38119.1}; TaxID=1444258 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-005-03_S4_C3.;"
L3_072_011G1_scaffold_33_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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10993..12219
DNA (1227bp) protein (409aa)
Inner membrane protein yfiN n=116 Tax=Escherichia coli RepID=E2QQ61_ECOLX
yfiN; Inner membrane protein yfiN
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:ELJ69657.1}; TaxID=1169364 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE85.;"
L3_072_011G1_scaffold_33_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12235..12717
DNA (483bp) protein (161aa)
Lipoprotein yfiB n=315 Tax=Escherichia RepID=E2QQ62_ECOLX
outer membrane lipoprotein
Outer membrane lipoprotein {ECO:0000313|EMBL:ELJ69658.1}; TaxID=1169364 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE85.;"
L3_072_011G1_scaffold_33_13
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(12794..13141)
DNA (348bp) protein (116aa)
50S ribosomal protein L19 n=1440 Tax=Enterobacteriaceae RepID=RL19_ECO24
rplS; 50S ribosomal protein L19
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=1281237 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli UMEA 3304-1.;"
L3_072_011G1_scaffold_33_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13183..13950)
DNA (768bp) protein (256aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA (guanine-N(1)-)-methyltransferase; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=1446560 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O121:H19 str. 2010C-3609.;"
tRNA (guanine-N(1)-)-methyltransferase n=1264 Tax=Enterobacteriaceae RepID=TRMD_ECO24
trmD; tRNA (guanine-1-)-methyltransferase
L3_072_011G1_scaffold_33_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13981..14529)
DNA (549bp) protein (183aa)
Ribosome maturation factor RimM n=1393 Tax=Enterobacteriaceae RepID=RIMM_SHIBS
rimM; 16S rRNA-processing protein RimM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=701177 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O55:H7 (strain CB9615 / EPEC).;"
L3_072_011G1_scaffold_33_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(14548..14796)
DNA (249bp) protein (83aa)
30S ribosomal protein S16 n=1 Tax=Escherichia coli MS 185-1 RepID=D8CJ66_ECOLX
rpsP; 30S ribosomal protein S16
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1116116 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli BCE030_MS-09.;"
L3_072_011G1_scaffold_33_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(14933..16294)
DNA (1362bp) protein (454aa)
Signal recognition particle protein n=1280 Tax=Enterobacteriaceae RepID=SRP54_ECO57
ffh; signal recognition particle protein
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306, ECO:0000313|EMBL:CBJ02321.1}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=316401 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O78:H11 (strain H10407 / ETEC).;"
L3_072_011G1_scaffold_33_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16386..17252
DNA (867bp) protein (289aa)
Inner membrane protein ypjD n=1 Tax=Escherichia coli KTE101 RepID=L4FV51_ECOLX
ypjD; hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADD57717.1}; TaxID=701177 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O55:H7 (strain CB9615 / EPEC).;"
L3_072_011G1_scaffold_33_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17318..18559
DNA (1242bp) protein (414aa)
CBS/transporter associated domain protein n=174 Tax=Escherichia coli RepID=E1P7W5_ECOAB
hypothetical protein
Inner membrane protein {ECO:0000313|EMBL:ELJ69665.1}; TaxID=1169364 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE85.;"
L3_072_011G1_scaffold_33_20
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18614..19207)
DNA (594bp) protein (198aa)
Protein GrpE n=14 Tax=Escherichia coli RepID=T6DIZ6_ECOLX
grpE; heat shock protein HSP70 cofactor
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=1444037 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-011-08_S1_C1.;"
L3_072_011G1_scaffold_33_21
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19330..20208
DNA (879bp) protein (293aa)
ppnK; inorganic polyphosphate/ATP-NAD kinase (EC:2.7.1.23)
NAD kinase {ECO:0000255|HAMAP-Rule:MF_00361}; EC=2.7.1.23 {ECO:0000255|HAMAP-Rule:MF_00361};; ATP-dependent NAD kinase {ECO:0000255|HAMAP-Rule:MF_00361}; TaxID=362663 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O6:K15:H31 (strain 536 / UPEC).;"
Probable inorganic polyphosphate/ATP-NAD kinase n=370 Tax=Escherichia RepID=PPNK_ECO27
L3_072_011G1_scaffold_33_22
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20294..21955
DNA (1662bp) protein (554aa)
DNA repair protein RecN n=235 Tax=Escherichia RepID=A1AEE6_ECOK1
recN; recombination and repair protein
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=364106 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain UTI89 / UPEC).;"
L3_072_011G1_scaffold_33_23
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22104..22445
DNA (342bp) protein (114aa)
Outer membrane protein assembly factor BamE n=1339 Tax=Enterobacteriaceae RepID=BAME_ECOL6
OmlA family protein
Outer membrane protein assembly factor BamE {ECO:0000256|HAMAP-Rule:MF_00925}; Flags: Precursor;; TaxID=1116119 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2719100.;"
L3_072_011G1_scaffold_33_24
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22508..22798)
DNA (291bp) protein (97aa)
Persistence and stress-resistance antitoxin PasI n=380 Tax=Escherichia RepID=PASI_ECOL6
hypothetical protein
UPF0125 protein G925_02677 {ECO:0000256|HAMAP-Rule:MF_00460}; TaxID=1281200 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain UMEA 3162-1).;"
L3_072_011G1_scaffold_33_25
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22788..23264)
DNA (477bp) protein (159aa)
Persistence and stress-resistance toxin PasT n=390 Tax=Escherichia RepID=PAST_ECOL6
yfjG; hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE08409.1}; TaxID=364106 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain UTI89 / UPEC).;"
L3_072_011G1_scaffold_33_26
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23396..23878
DNA (483bp) protein (161aa)
SsrA-binding protein n=1351 Tax=Enterobacteriaceae RepID=SSRP_ECO24
smpB; SsrA-binding protein
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; Small protein B {ECO:0000256|HAMAP-Rule:MF_00023}; TaxID=550672 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli B088.;"
L3_072_011G1_scaffold_33_27
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25138..26115
DNA (978bp) protein (326aa)
Protein CsiD n=26 Tax=Escherichia coli RepID=B3HPZ1_ECOLX
csiD; Protein csiD
Protein CsiD {ECO:0000255|HAMAP-Rule:MF_01083}; TaxID=405955 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O1:K1 / APEC.;"
L3_072_011G1_scaffold_33_28
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26135..27403
DNA (1269bp) protein (423aa)
L-2-hydroxyglutarate oxidase LhgO {ECO:0000256|HAMAP-Rule:MF_00990}; EC=1.1.3.15 {ECO:0000256|HAMAP-Rule:MF_00990};; TaxID=1432559 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli ISC41.;"
FAD dependent oxidoreductase n=19 Tax=Escherichia coli RepID=B3HPZ2_ECOLX
hydroxyglutarate oxidase
L3_072_011G1_scaffold_33_29
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27426..28874
DNA (1449bp) protein (483aa)
gabD; succinate-semialdehyde dehydrogenase I (EC:1.2.1.16)
Succinate-semialdehyde dehydrogenase I, NADP-dependent {ECO:0000313|EMBL:CAR09280.2}; EC=1.2.1.16 {ECO:0000313|EMBL:CAR09280.2};; TaxID=585397 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O81 (strain ED1a).;"
Succinate-semialdehyde dehydrogenase [NadP+] n=56 Tax=Escherichia coli RepID=E2QQB4_ECOLX
L3_072_011G1_scaffold_33_30
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28888..30168
DNA (1281bp) protein (427aa)
4-aminobutyrate aminotransferase (EC:2.6.1.19)
4-aminobutyrate aminotransferase n=45 Tax=Escherichia coli RepID=Q0TEL5_ECOL5
4-aminobutyrate aminotransferase {ECO:0000313|EMBL:EYZ96786.1}; TaxID=1446551 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O119:H4 str. 03-3458.;"
Displaying items 1-30 of 59 in total

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