ggKbase home page

L3_072_011G1_scaffold_48

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_011G1_scaffold_48_1
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

261..1064
DNA (804bp) protein (268aa)
dkgB; 2,5-diketo-D-gluconate reductase B (EC:1.1.1.274)
2,5-diketo-D-gluconic acid reductase B {ECO:0000313|EMBL:EZJ46600.1}; EC=1.1.1.274 {ECO:0000313|EMBL:EZJ46600.1};; TaxID=1444258 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-005-03_S4_C3.;"
2,5-diketo-D-gluconic acid reductase B n=323 Tax=Escherichia RepID=E2QFC9_ECOLX
L3_072_011G1_scaffold_48_2
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1061..1975)
DNA (915bp) protein (305aa)
Transcriptional regulator, LysR family n=171 Tax=Escherichia RepID=Q0TLC9_ECOL5
yafC; putative transcriptional regulator LYSR-type
Transcriptional regulator {ECO:0000313|EMBL:EQP60003.1}; TaxID=1281011 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 70 (4-2963531).;"
L3_072_011G1_scaffold_48_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2192..3016
DNA (825bp) protein (275aa)
UPF0294 protein YafD n=861 Tax=Enterobacteriaceae RepID=A1A7Q0_ECOK1
hypothetical protein
UPF0294 protein YafD {ECO:0000256|HAMAP-Rule:MF_01119}; TaxID=1169364 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE85.;"
L3_072_011G1_scaffold_48_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3094..3864
DNA (771bp) protein (257aa)
Methyltransferase, UbiE/COQ5 family n=27 Tax=Escherichia coli RepID=B3HQD0_ECOLX
methyltransferase YafE
SAM-dependent methyltransferase {ECO:0000313|EMBL:EYZ94414.1}; TaxID=1446551 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O119:H4 str. 03-3458.;"
L3_072_011G1_scaffold_48_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3913..5133)
DNA (1221bp) protein (407aa)
mltD; membrane-bound lytic murein transglycosylase D (EC:3.2.1.-)
Membrane-bound lytic murein transglycosylase D n=1 Tax=Escherichia coli O6:K15:H31 (strain 536 / UPEC) RepID=Q0TLC6_ECOL5
Membrane-bound lytic murein transglycosylase D {ECO:0000313|EMBL:EQP60006.1}; TaxID=1281011 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 70 (4-2963531).;"
L3_072_011G1_scaffold_48_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5343..6098)
DNA (756bp) protein (252aa)
hydroxyacylglutathione hydrolase (EC:3.1.2.6)
Hydroxyacylglutathione hydrolase {ECO:0000256|HAMAP-Rule:MF_01374, ECO:0000256|SAAS:SAAS00035352}; EC=3.1.2.6 {ECO:0000256|HAMAP-Rule:MF_01374, ECO:0000256|SAAS:SAAS00035352};; Glyoxalase II {ECO:0000256|HAMAP-Rule:MF_01374}; TaxID=868133 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC1A.;"
Hydroxyacylglutathione hydrolase n=104 Tax=Escherichia coli RepID=GLO2_ECO27
L3_072_011G1_scaffold_48_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6132..6854
DNA (723bp) protein (241aa)
Methyltransferase domain protein n=19 Tax=Escherichia coli RepID=D8BL67_ECOLX
putative S-adenosyl-L-methionine-dependent methyltransferase
Uncharacterized protein {ECO:0000313|EMBL:KDV39518.1}; TaxID=1446599 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O146:H21 str. 2010C-3325.;"
L3_072_011G1_scaffold_48_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6851..7318)
DNA (468bp) protein (156aa)
rnhA; ribonuclease H (EC:3.1.26.4)
Ribonuclease H {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437}; Short=RNase H {ECO:0000256|HAMAP-Rule:MF_00042};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437};; TaxID=868140 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC2C.;"
Ribonuclease H n=112 Tax=Escherichia coli RepID=RNH_ECO27
L3_072_011G1_scaffold_48_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7374..8114
DNA (741bp) protein (247aa)
DNA polymerase III subunit epsilon (EC:2.7.7.7)
DNA polymerase III subunit epsilon n=1 Tax=Escherichia coli UMEA 3108-1 RepID=T8QGB5_ECOLX
DNA polymerase III, epsilon subunit {ECO:0000313|EMBL:ESD46461.1}; TaxID=1268991 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 908519.;"
L3_072_011G1_scaffold_48_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8652..9437
DNA (786bp) protein (262aa)
Uncharacterized lipoprotein yafT n=147 Tax=Escherichia RepID=E2QFZ1_ECOLX
yafT; aminopeptidase
Aminopeptidase {ECO:0000313|EMBL:ELJ76876.1}; TaxID=1169364 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE85.;"
L3_072_011G1_scaffold_48_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9777..10256)
DNA (480bp) protein (160aa)
Type VI secretion system effector, Hcp1 family n=41 Tax=Escherichia coli RepID=B3HQC3_ECOLX
hypothetical protein
Hcp1 family type VI secretion system effector {ECO:0000313|EMBL:ELJ76877.1}; TaxID=1169364 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE85.;"
L3_072_011G1_scaffold_48_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10274..11632)
DNA (1359bp) protein (453aa)
Uncharacterized protein n=79 Tax=Escherichia coli RepID=E4P4Z1_ECO8N
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ESD46465.1}; TaxID=1268991 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 908519.;"
L3_072_011G1_scaffold_48_13
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11643..15167)
DNA (3525bp) protein (1175aa)
Type VI secretion protein IcmF n=7 Tax=Escherichia coli RepID=T6I0P4_ECOLX
Type VI secretion protein IcmF {ECO:0000313|EMBL:EQP60014.1}; TaxID=1281011 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 70 (4-2963531).;"
IcmF-like protein
L3_072_011G1_scaffold_48_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15187..16629)
DNA (1443bp) protein (481aa)
Uncharacterized protein n=27 Tax=Escherichia coli RepID=E4P4Z3_ECO8N
hypothetical protein
SntD {ECO:0000313|EMBL:AHW84606.1}; TaxID=562 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli.;"
L3_072_011G1_scaffold_48_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16634..17377)
DNA (744bp) protein (248aa)
Type VI secretion-associated protein, VC_A0118 family n=28 Tax=Escherichia coli RepID=B3HQB9_ECOLX
hypothetical protein
Type VI secretion-associated protein {ECO:0000313|EMBL:ELJ76881.1}; TaxID=1169364 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE85.;"
L3_072_011G1_scaffold_48_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17374..20136)
DNA (2763bp) protein (921aa)
Type VI secretion ATPase, ClpV1 family n=19 Tax=Escherichia coli RepID=B3HQB8_ECOLX
Clp ATPase
ClpV1 family type VI secretion ATPase {ECO:0000313|EMBL:EQP60017.1}; TaxID=1281011 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 70 (4-2963531).;"
L3_072_011G1_scaffold_48_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20146..20910)
DNA (765bp) protein (255aa)
Uncharacterized protein n=95 Tax=Escherichia RepID=E4P4Z6_ECO8N
hypothetical protein
Type IV / VI secretion system protein, DotU family {ECO:0000313|EMBL:ESD33695.1}; TaxID=1268991 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 908519.;"
L3_072_011G1_scaffold_48_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20915..22261)
DNA (1347bp) protein (449aa)
Type VI secretion protein, family n=25 Tax=Escherichia coli RepID=B3HQB6_ECOLX
hypothetical protein
Type VI secretion protein, VC_A0114 family {ECO:0000313|EMBL:ESD33694.1}; TaxID=1268991 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 908519.;"
L3_072_011G1_scaffold_48_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22264..22788)
DNA (525bp) protein (175aa)
Type VI secretion lipoprotein, VC_A0113 family n=25 Tax=Escherichia coli RepID=E9U845_ECOLX
lipoprotein
Type VI secretion lipoprotein, VC_A0113 family {ECO:0000313|EMBL:ESD33693.1}; TaxID=1268991 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 908519.;"
L3_072_011G1_scaffold_48_20
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22785..24065)
DNA (1281bp) protein (427aa)
Type VI secretion system FHA domain protein n=35 Tax=Escherichia coli RepID=E9U0D7_ECOLX
hypothetical protein
Type VI secretion system FHA domain protein {ECO:0000313|EMBL:ESD33692.1}; TaxID=1268991 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 908519.;"
L3_072_011G1_scaffold_48_21
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24082..25131)
DNA (1050bp) protein (350aa)
Uncharacterized protein n=35 Tax=Escherichia coli RepID=E4P500_ECO8N
hypothetical protein
SntK {ECO:0000313|EMBL:AHW84613.1}; TaxID=562 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli.;"
L3_072_011G1_scaffold_48_22
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25095..26936)
DNA (1842bp) protein (614aa)
Uncharacterized protein n=28 Tax=Escherichia coli RepID=E4P501_ECO8N
hypothetical protein
Type VI secretion protein, VC_A0110 family {ECO:0000313|EMBL:ESD33690.1}; TaxID=1268991 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 908519.;"
L3_072_011G1_scaffold_48_23
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26942..27367)
DNA (426bp) protein (142aa)
Uncharacterized protein n=36 Tax=Escherichia coli RepID=E4P502_ECO8N
hypothetical protein
Type VI secretion system lysozyme protein {ECO:0000313|EMBL:ESD33689.1}; TaxID=1268991 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 908519.;"
L3_072_011G1_scaffold_48_24
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27372..28856)
DNA (1485bp) protein (495aa)
Aec18 n=182 Tax=Escherichia RepID=Q6TKV0_ECOLX
hypothetical protein
EvpB/family type VI secretion protein {ECO:0000313|EMBL:ELJ76890.1}; TaxID=1169364 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE85.;"
L3_072_011G1_scaffold_48_25
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28879..29382)
DNA (504bp) protein (168aa)
Aec17 n=174 Tax=Escherichia RepID=Q6TKV1_ECOLX
hypothetical protein
EvfU {ECO:0000313|EMBL:AET37210.1}; TaxID=439184 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli RS218.;"
L3_072_011G1_scaffold_48_26
Escherichia coli CAG:4, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30088..30606
DNA (519bp) protein (173aa)
Aec16 n=288 Tax=Escherichia RepID=Q6TKV2_ECOLX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDC75725.1}; TaxID=1263075 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia; environmental samples.;" source="Escherichia coli CAG:4.;"
L3_072_011G1_scaffold_48_27
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30692..30811
DNA (120bp) protein (40aa)
Uncharacterized protein n=168 Tax=Escherichia RepID=T2MMQ4_ECOLX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EZJ46629.1}; TaxID=1444258 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-005-03_S4_C3.;"
L3_072_011G1_scaffold_48_28
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30827..30922
DNA (96bp) protein (32aa)
Type VI secretion system secreted protein VgrG n=1 Tax=Escherichia coli HVH 125 (4-2634716) RepID=T6XYH6_ECOLX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE05756.1}; TaxID=364106 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain UTI89 / UPEC).;"
Displaying 28 items

View Taxonomy