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L3_072_057G1_scaffold_12

Search features with annotation key words

Displaying items 1-30 of 154 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_057G1_scaffold_12_1
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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107..1933
DNA (1827bp) protein (609aa)
UPI0003D5C205 related cluster n=1 Tax=unknown RepID=UPI0003D5C205
GTP-binding protein TypA {ECO:0000313|EMBL:KHD15574.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
typA; GTP-binding protein TypA/BipA
L3_072_057G1_scaffold_12_2
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2016..3068
DNA (1053bp) protein (351aa)
Uncharacterized protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MSB1_CLOSA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGX42337.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_072_057G1_scaffold_12_3
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3083..3727
DNA (645bp) protein (215aa)
O-methyltransferase, family 3 n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MAP4_9CLOT
O-methyltransferase family protein {ECO:0000313|EMBL:AJG97849.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
O-methyltransferase, family 3
L3_072_057G1_scaffold_12_4
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3733..4968
DNA (1236bp) protein (412aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H7Q8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH98223.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
peptidase U32
L3_072_057G1_scaffold_12_5
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4991..5608
DNA (618bp) protein (206aa)
udk; uridine kinase (EC:2.7.1.48)
Uridine kinase {ECO:0000256|HAMAP-Rule:MF_00551, ECO:0000256|RuleBase:RU003825}; EC=2.7.1.48 {ECO:0000256|HAMAP-Rule:MF_00551, ECO:0000256|RuleBase:RU003825};; Cytidine monophosphokinase {ECO:0000256|HAMAP-Rule:MF_00551}; Uridine monophosphokinase {ECO:0000256|HAMAP-Rule:MF_00551}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
Uridine kinase n=1 Tax=Clostridium sp. CAG:265 RepID=R6KGG6_9CLOT
L3_072_057G1_scaffold_12_6
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5669..7270
DNA (1602bp) protein (534aa)
Penicillin-binding protein 2 n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UXY9_CLOBO
penicillin binding transpeptidase domain protein
Penicillin binding transpeptidase domain protein {ECO:0000313|EMBL:AIY85062.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_072_057G1_scaffold_12_7
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7542..8240
DNA (699bp) protein (233aa)
RNA polymerase sigma factor n=2 Tax=Clostridium RepID=A6LSG7_CLOB8
sporulation sigma factor SigK
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium; acetobutylicum).;"
L3_072_057G1_scaffold_12_8
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8348..9403
DNA (1056bp) protein (352aa)
Twitching motility protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HGP7_9CLOT
Twitching motility protein {ECO:0000313|EMBL:EEH98219.2}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
twitching motility family protein
L3_072_057G1_scaffold_12_9
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9697..10914
DNA (1218bp) protein (406aa)
Cell division protein FtsA n=1 Tax=Clostridium sp. DL-VIII RepID=G7MCN2_9CLOT
Cell division protein FtsA {ECO:0000313|EMBL:EHI98375.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
ftsA; cell division protein FtsA
L3_072_057G1_scaffold_12_10
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10901..12049
DNA (1149bp) protein (383aa)
Cell division protein FtsZ n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MP87_CLOSA
ftsZ; cell division protein FtsZ
Cell division protein FtsZ {ECO:0000256|HAMAP-Rule:MF_00909, ECO:0000256|RuleBase:RU000631}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_072_057G1_scaffold_12_11
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12416..13219
DNA (804bp) protein (268aa)
spoIIGA; sigma-E processing peptidase spoiiga (EC:3.4.23.-)
Sigma-E processing peptidase SpoIIGA n=2 Tax=Clostridium botulinum E RepID=B2V3X7_CLOBA
Sporulation factor SpoIIGA family protein {ECO:0000313|EMBL:AIY81768.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
L3_072_057G1_scaffold_12_12
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13231..13935
DNA (705bp) protein (235aa)
RNA polymerase sigma factor n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FLP9_9CLOT
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
sigE; RNA polymerase sigma-E factor
L3_072_057G1_scaffold_12_13
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14011..14811
DNA (801bp) protein (267aa)
RNA polymerase sigma-G factor n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H429_9CLOT
sigG; RNA polymerase sigma-G factor
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_072_057G1_scaffold_12_14
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14905..15171
DNA (267bp) protein (89aa)
Sporulation protein YlmC/YmxH n=1 Tax=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) RepID=A6LSH4_CLOB8
sporulation , YlmC/YmxH family protein
Uncharacterized protein {ECO:0000313|EMBL:KJU70540.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
L3_072_057G1_scaffold_12_15
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15247..15699
DNA (453bp) protein (151aa)
Transcriptional repressor NrdR n=1 Tax=Clostridium chauvoei JF4335 RepID=S6EJZ4_9CLOT
nrdR; transcriptional regulator NrdR
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
L3_072_057G1_scaffold_12_16
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15845..16579
DNA (735bp) protein (245aa)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9Y0R7_9CLOT
Laccase domain protein {ECO:0000256|RuleBase:RU361274}; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.;"
multi-copper polyphenol oxidoreductase laccase family protein
L3_072_057G1_scaffold_12_17
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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16593..17291
DNA (699bp) protein (233aa)
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MJL5_9CLOT
phoP; alkaline phosphatase synthesis transcriptional regulatory protein PhoP
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP {ECO:0000313|EMBL:AGF55036.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
L3_072_057G1_scaffold_12_18
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17293..18969
DNA (1677bp) protein (559aa)
histidine kinase n=1 Tax=Clostridium botulinum RepID=UPI0002D49A8B
two-component sensor histidine kinase
Sensor histidine kinase {ECO:0000313|EMBL:ACD23363.1}; Two-component sensor kinase {ECO:0000313|EMBL:CDH90114.1}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
L3_072_057G1_scaffold_12_19
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19163..20032
DNA (870bp) protein (290aa)
Periplasmic phosphate-binding protein n=1 Tax=Clostridium botulinum (strain Alaska E43 / Type E3) RepID=B2V3Y5_CLOBA
phosphate-binding protein
Phosphate ABC transporter substrate-binding protein {ECO:0000313|EMBL:KIL09398.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
L3_072_057G1_scaffold_12_20
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20052..20942
DNA (891bp) protein (297aa)
Phosphate ABC transporter, permease protein PstC n=2 Tax=Clostridium botulinum E RepID=B2V3Y6_CLOBA
pstC; phosphate ABC transporter, permease protein PstC
Phosphate ABC transporter permease {ECO:0000313|EMBL:KJU70534.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
L3_072_057G1_scaffold_12_21
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20942..21823
DNA (882bp) protein (294aa)
Phosphate ABC transporter, permease protein PstA n=2 Tax=Clostridium botulinum E RepID=B2V3Y7_CLOBA
pstA; phosphate ABC transporter, permease protein PstA
Phosphate ABC transporter, permease protein PstA {ECO:0000313|EMBL:EES49124.1}; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. 'BoNT E Beluga'.;"
L3_072_057G1_scaffold_12_22
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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21833..22582
DNA (750bp) protein (250aa)
pstB; phosphate ABC transporter, ATP-binding protein (EC:3.6.3.27)
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01702}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
Phosphate import ATP-binding protein PstB n=1 Tax=Clostridium colicanis 209318 RepID=N9WFU3_9CLOT
L3_072_057G1_scaffold_12_23
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22598..23260
DNA (663bp) protein (221aa)
Phosphate-specific transport system accessory protein PhoU n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MRR5_CLOSA
phoU; phosphate-specific transport system accessory protein PhoU
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_072_057G1_scaffold_12_24
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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23377..25374
DNA (1998bp) protein (666aa)
Methyl-accepting chemotaxis protein n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CAA9_9CLOT
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:EOC99269.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
tlpB; methyl-accepting chemotaxis protein TlpB
L3_072_057G1_scaffold_12_25
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25580..26914
DNA (1335bp) protein (445aa)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9Y1P0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ01722.1}; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.;"
hypothetical protein
L3_072_057G1_scaffold_12_26
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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26914..28233
DNA (1320bp) protein (440aa)
GTPase Der n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6U0N2_9CLOT
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
engA; GTP-binding protein EngA
L3_072_057G1_scaffold_12_27
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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28233..29225
DNA (993bp) protein (331aa)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] {ECO:0000256|HAMAP-Rule:MF_00394}; EC=1.1.1.94 {ECO:0000256|HAMAP-Rule:MF_00394};; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00394}; Flags: Precursor;; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
gpsA; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (EC:1.1.1.94)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] n=1 Tax=Clostridium sp. DL-VIII RepID=G7MCS5_9CLOT
L3_072_057G1_scaffold_12_28
unknown

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comp(29257..29781)
DNA (525bp) protein (175aa)

This feature has no annotations

L3_072_057G1_scaffold_12_29
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30026..31504
DNA (1479bp) protein (493aa)
Stage IV sporulation protein A {ECO:0000256|PIRNR:PIRNR007466}; EC=3.6.1.3 {ECO:0000256|PIRNR:PIRNR007466};; Coat morphogenetic protein SpoIVA {ECO:0000256|PIRNR:PIRNR007466}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
spoIVA; stage IV sporulation protein A (EC:3.6.1.3)
Stage IV sporulation protein A n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FLR0_9CLOT
L3_072_057G1_scaffold_12_30
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(31537..32562)
DNA (1026bp) protein (342aa)
Branched-chain-amino-acid aminotransferase {ECO:0000256|RuleBase:RU004517}; EC=2.6.1.42 {ECO:0000256|RuleBase:RU004517};; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
ilvE; branched-chain amino acid aminotransferase (EC:2.6.1.42)
Branched-chain-amino-acid aminotransferase n=1 Tax=Clostridium celatum DSM 1785 RepID=L1Q6J0_9CLOT
Displaying items 1-30 of 154 in total

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