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L3_072_057G1_scaffold_175

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_057G1_scaffold_175_1
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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67..930
DNA (864bp) protein (288aa)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
Putative ribosome biogenesis GTPase RsgA n=6 Tax=Clostridium perfringens RepID=RSGA_CLOPE
ribosome-associated GTPase
L3_072_057G1_scaffold_175_2
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

930..1583
DNA (654bp) protein (218aa)
ribulose-phosphate 3-epimerase (EC:5.1.3.1)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
Ribulose-phosphate 3-epimerase n=4 Tax=Clostridium perfringens RepID=Q8XJM0_CLOPE
L3_072_057G1_scaffold_175_3
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1585..2214
DNA (630bp) protein (210aa)
thiamine pyrophosphokinase (EC:2.7.6.2)
Thiamine pyrophosphokinase {ECO:0000313|EMBL:EDT14027.1}; EC=2.7.6.2 {ECO:0000313|EMBL:EDT14027.1};; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
Thiamine pyrophosphokinase n=8 Tax=Clostridium perfringens RepID=H7CXD0_CLOPF
L3_072_057G1_scaffold_175_4
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2457..2648)
DNA (192bp) protein (64aa)
50S ribosomal protein L28 n=9 Tax=Clostridium perfringens RepID=RL28_CLOP1
rpmB; 50S ribosomal protein L28
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
L3_072_057G1_scaffold_175_5
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2908..3255
DNA (348bp) protein (116aa)
Uncharacterized protein n=11 Tax=Clostridium perfringens RepID=H7CXC8_CLOPF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIA16583.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
L3_072_057G1_scaffold_175_6
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3269..4915
DNA (1647bp) protein (549aa)
DAK2 domain protein n=4 Tax=Clostridium perfringens RepID=Q0TPM2_CLOP1
DAK2 domain protein {ECO:0000313|EMBL:EDT26504.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
DAK2 domain-containing protein
L3_072_057G1_scaffold_175_7
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5068..7140
DNA (2073bp) protein (691aa)
ATP-dependent DNA helicase RecG {ECO:0000313|EMBL:EDT14023.1}; EC=3.6.1.- {ECO:0000313|EMBL:EDT14023.1};; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
ATP-dependent DNA helicase RecG n=1 Tax=Clostridium perfringens E str. JGS1987 RepID=B1BW77_CLOPF
recG; ATP-dependent DNA helicase RecG
L3_072_057G1_scaffold_175_8
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7205..7762
DNA (558bp) protein (186aa)
RNA methyltransferase, RsmD family n=10 Tax=Clostridium perfringens RepID=Q0TPM4_CLOP1
methyltransferase
Putative methyltransferase {ECO:0000313|EMBL:EDT14039.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
L3_072_057G1_scaffold_175_9
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7764..8258
DNA (495bp) protein (165aa)
Phosphopantetheine adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109024}; EC=2.7.7.3 {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109037};; Dephospho-CoA pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00151}; Pantetheine-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
Phosphopantetheine adenylyltransferase n=8 Tax=Clostridium perfringens RepID=COAD_CLOPE
coaD; phosphopantetheine adenylyltransferase
L3_072_057G1_scaffold_175_10
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8267..8797
DNA (531bp) protein (177aa)
Uncharacterized protein n=8 Tax=Clostridium perfringens RepID=H7CXC3_CLOPF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIA16578.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
L3_072_057G1_scaffold_175_11
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8780..9940)
DNA (1161bp) protein (387aa)
Sporulation integral membrane protein YlbJ n=1 Tax=Clostridium perfringens B str. ATCC 3626 RepID=B1R8H0_CLOPF
Sporulation integral membrane protein YlbJ {ECO:0000313|EMBL:EDT23461.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
hypothetical protein
L3_072_057G1_scaffold_175_12
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10005..11213)
DNA (1209bp) protein (403aa)
UPF0348 protein CPE1726 n=2 Tax=Clostridium perfringens RepID=Y1726_CLOPE
hypothetical protein
UPF0348 protein CPE1726 {ECO:0000255|HAMAP-Rule:MF_01539}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
L3_072_057G1_scaffold_175_13
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11448..12449
DNA (1002bp) protein (334aa)
Phosphate acetyltransferase n=9 Tax=Clostridium perfringens RepID=Q8XJN1_CLOPE
eutD; phosphotransacetylase
Phosphotransacetylase {ECO:0000313|EMBL:EIA16575.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
L3_072_057G1_scaffold_175_14
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12540..13736
DNA (1197bp) protein (399aa)
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1721.;"
Acetate kinase 2 n=2 Tax=Clostridium perfringens RepID=ACKA2_CLOPE
ackB; acetate kinase
L3_072_057G1_scaffold_175_15
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13856..14350
DNA (495bp) protein (165aa)
Uncharacterized protein n=10 Tax=Clostridium perfringens RepID=H7CXB8_CLOPF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EDT26493.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
L3_072_057G1_scaffold_175_16
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


14366..14548
DNA (183bp) protein (61aa)
50S ribosomal protein L32 n=11 Tax=Clostridium perfringens RepID=RL32_CLOP1
rpmF; 50S ribosomal protein L32
50S ribosomal protein L32 {ECO:0000255|HAMAP-Rule:MF_00340}; TaxID=195103 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain ATCC 13124 / DSM 756 / JCM 1290 /; NCIMB 6125 / NCTC 8237 / Type A).;"
L3_072_057G1_scaffold_175_17
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14605..15624
DNA (1020bp) protein (340aa)
Phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054336}; EC=2.3.1.n2 {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054327};; Acyl-ACP phosphotransacylase {ECO:0000256|HAMAP-Rule:MF_00019}; Acyl-[acyl-carrier-protein]--phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; Phosphate-acyl-ACP acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
Phosphate acyltransferase n=1 Tax=Clostridium perfringens C str. JGS1495 RepID=B1BFZ1_CLOPF
plsX; glycerol-3-phosphate acyltransferase PlsX
L3_072_057G1_scaffold_175_18
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15701..15931
DNA (231bp) protein (77aa)
Acyl carrier protein n=11 Tax=Clostridium perfringens RepID=ACP_CLOP1
acpP; acyl carrier protein
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
L3_072_057G1_scaffold_175_19
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16030..16743
DNA (714bp) protein (238aa)
rnc; ribonuclease III (EC:3.1.26.3)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
Ribonuclease 3 n=7 Tax=Clostridium perfringens RepID=RNC_CLOPE
L3_072_057G1_scaffold_175_20
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16722..17795
DNA (1074bp) protein (358aa)
Radical SAM domain protein n=2 Tax=Clostridium perfringens RepID=B1RHU1_CLOPF
Radical SAM domain protein {ECO:0000313|EMBL:EDT71379.1}; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1721.;"
radical SAM domain-containing protein
L3_072_057G1_scaffold_175_21
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18000..21557
DNA (3558bp) protein (1186aa)
Chromosome partition protein Smc n=1 Tax=Clostridium perfringens C str. JGS1495 RepID=B1BFZ5_CLOPF
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
smc; chromosome segregation protein SMC
L3_072_057G1_scaffold_175_22
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21571..22485
DNA (915bp) protein (305aa)
Signal recognition particle receptor FtsY n=5 Tax=Clostridium perfringens RepID=Q0TPN8_CLOP1
ftsY; signal recognition particle-docking protein FtsY
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
L3_072_057G1_scaffold_175_23
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22661..22999
DNA (339bp) protein (113aa)
UPF0122 protein CPE1714 n=1 Tax=Clostridium perfringens (strain 13 / Type A) RepID=Y1714_CLOPE
DNA-binding protein
UPF0122 protein CPE1714; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
L3_072_057G1_scaffold_175_24
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


23011..24369
DNA (1359bp) protein (453aa)
Signal recognition particle protein n=8 Tax=Clostridium perfringens RepID=H7CXA9_CLOPF
ffh; signal recognition particle protein
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1721.;"
L3_072_057G1_scaffold_175_25
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


24403..24648
DNA (246bp) protein (82aa)
30S ribosomal protein S16 n=11 Tax=Clostridium perfringens RepID=RS16_CLOP1
rpsP; 30S ribosomal protein S16
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
L3_072_057G1_scaffold_175_26
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24692..24919
DNA (228bp) protein (76aa)
UPF0109 protein CPE1711 n=7 Tax=Clostridium perfringens RepID=Y1711_CLOPE
hypothetical protein
UPF0109 protein CPR_1683 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain SM101 / Type A).;"
L3_072_057G1_scaffold_175_27
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24975..25472
DNA (498bp) protein (166aa)
Ribosome maturation factor RimM n=8 Tax=Clostridium perfringens RepID=RIMM_CLOP1
rimM; 16S rRNA-processing protein RimM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
L3_072_057G1_scaffold_175_28
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25462..26172
DNA (711bp) protein (237aa)
trmD; tRNA (guanine-N(1)-)-methyltransferase (EC:2.1.1.31)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
tRNA (guanine-N(1)-)-methyltransferase n=4 Tax=Clostridium perfringens RepID=TRMD_CLOP1
L3_072_057G1_scaffold_175_29
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


26293..26640
DNA (348bp) protein (116aa)
50S ribosomal protein L19 n=8 Tax=Clostridium perfringens RepID=RL19_CLOP1
rplS; 50S ribosomal protein L19
50S ribosomal protein L19 {ECO:0000255|HAMAP-Rule:MF_00402}; TaxID=195103 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain ATCC 13124 / DSM 756 / JCM 1290 /; NCIMB 6125 / NCTC 8237 / Type A).;"
L3_072_057G1_scaffold_175_30
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26787..27632
DNA (846bp) protein (282aa)
Ribosome biogenesis GTPase A n=2 Tax=Clostridium perfringens RepID=Q0SSB3_CLOPS
rbgA; ribosomal biogenesis GTPase
Ribosome biogenesis GTPase A {ECO:0000256|PIRNR:PIRNR006230}; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain SM101 / Type A).;"
Displaying items 1-30 of 34 in total

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