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L3_072_057G1_scaffold_235

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_057G1_scaffold_235_1
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4..2523)
DNA (2520bp) protein (840aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
gyrA; DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A n=15 Tax=Clostridium perfringens RepID=B1BI52_CLOPF
L3_072_057G1_scaffold_235_2
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2545..4461)
DNA (1917bp) protein (639aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
gyrB; DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B n=8 Tax=Clostridium perfringens RepID=Q0TV59_CLOP1
L3_072_057G1_scaffold_235_3
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4698..4991)
DNA (294bp) protein (98aa)
Uncharacterized protein n=2 Tax=Clostridium perfringens RepID=B1RTQ1_CLOPF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EDT70221.1}; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1721.;"
L3_072_057G1_scaffold_235_4
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4972..6057)
DNA (1086bp) protein (362aa)
DNA replication and repair protein RecF n=11 Tax=Clostridium perfringens RepID=RECF_CLOP1
recF; recombination protein F
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
L3_072_057G1_scaffold_235_5
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6113..6319)
DNA (207bp) protein (69aa)
S4 domain-containing protein n=9 Tax=Clostridium perfringens RepID=H7CRF3_CLOPF
S4 domain-containing protein
S4 domain protein {ECO:0000313|EMBL:EDT22249.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
L3_072_057G1_scaffold_235_6
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6445..7545)
DNA (1101bp) protein (367aa)
dnaN; DNA polymerase III subunit beta (EC:2.7.7.7)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
DNA polymerase III subunit beta n=11 Tax=Clostridium perfringens RepID=H7CRF2_CLOPF
L3_072_057G1_scaffold_235_7
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7840..9213)
DNA (1374bp) protein (458aa)
Chromosomal replication initiator protein DnaA n=7 Tax=Clostridium perfringens RepID=DNAA_CLOP1
dnaA; chromosomal replication initiation protein
Chromosomal replication initiator protein DnaA {ECO:0000255|HAMAP-Rule:MF_00377}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
L3_072_057G1_scaffold_235_8
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


10245..10379
DNA (135bp) protein (45aa)
50S ribosomal protein L34 n=11 Tax=Clostridium perfringens RepID=RL34_CLOP1
rpmH; 50S ribosomal protein L34
50S ribosomal protein L34 {ECO:0000255|HAMAP-Rule:MF_00391}; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain SM101 / Type A).;"
L3_072_057G1_scaffold_235_9
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10440..10817
DNA (378bp) protein (126aa)
rnpA; ribonuclease P (EC:3.1.26.5)
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rule:MF_00227};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143815};; Protein C5 {ECO:0000256|HAMAP-Rule:MF_00227}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
Ribonuclease P protein component n=11 Tax=Clostridium perfringens RepID=RNPA_CLOP1
L3_072_057G1_scaffold_235_10
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10789..10998
DNA (210bp) protein (70aa)
Putative membrane protein insertion efficiency factor n=11 Tax=Clostridium perfringens RepID=YIDD_CLOP1
hypothetical protein
Putative membrane protein insertion efficiency factor {ECO:0000256|HAMAP-Rule:MF_00386, ECO:0000256|SAAS:SAAS00100919}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
L3_072_057G1_scaffold_235_11
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11032..11748
DNA (717bp) protein (239aa)
Membrane protein insertase YidC n=3 Tax=Clostridium perfringens RepID=YIDC_CLOPE
spoIIIJ; inner membrane protein translocase component YidC
Membrane protein OxaA {ECO:0000313|EMBL:EDT13624.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
L3_072_057G1_scaffold_235_12
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11790..12413
DNA (624bp) protein (208aa)
SpoIIIJ-associated protein n=3 Tax=Clostridium perfringens RepID=Q8XH29_CLOPE
jag; SpoIIIJ-associated protein
SpoIIIJ-associated protein {ECO:0000313|EMBL:BAB82362.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
L3_072_057G1_scaffold_235_13
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12756..14132
DNA (1377bp) protein (459aa)
tRNA modification GTPase MnmE {ECO:0000256|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000256|HAMAP-Rule:MF_00379};; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
tRNA modification GTPase MnmE n=9 Tax=Clostridium perfringens RepID=MNME_CLOP1
trmE; tRNA modification GTPase TrmE
L3_072_057G1_scaffold_235_14
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14147..16039
DNA (1893bp) protein (631aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=2 Tax=Clostridium perfringens RepID=B1RJH0_CLOPF
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000256|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000256|HAMAP-Rule:MF_00129}; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1721.;"
gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
L3_072_057G1_scaffold_235_15
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16216..16935
DNA (720bp) protein (240aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00277524};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1721.;"
Ribosomal RNA small subunit methyltransferase G n=1 Tax=Clostridium perfringens NCTC 8239 RepID=B1RT15_CLOPF
gidB; 16S rRNA methyltransferase GidB
L3_072_057G1_scaffold_235_16
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17185..17958
DNA (774bp) protein (258aa)
Sporulation initiation inhibitor protein soj n=10 Tax=Clostridium perfringens RepID=H7D010_CLOPF
soj; sporulation initiation inhibitor protein soj
Sporulation initiation inhibitor protein soj {ECO:0000313|EMBL:EDT22611.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
L3_072_057G1_scaffold_235_17
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17959..18819
DNA (861bp) protein (287aa)
Stage 0 sporulation protein J n=9 Tax=Clostridium perfringens RepID=H7D009_CLOPF
stage 0 sporulation protein J
Stage 0 sporulation protein J {ECO:0000313|EMBL:BAB82357.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
L3_072_057G1_scaffold_235_18
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18868..19365
DNA (498bp) protein (166aa)
Uncharacterized protein n=9 Tax=Clostridium perfringens RepID=H7D008_CLOPF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EDS80506.1}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
L3_072_057G1_scaffold_235_19
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19517..20107)
DNA (591bp) protein (197aa)
Putative sporulation protein YyaC n=1 Tax=Clostridium perfringens (strain SM101 / Type A) RepID=Q0SPQ9_CLOPS
yyaC; putative sporulation protein YyaC
Putative sporulation protein YyaC {ECO:0000313|EMBL:ABG86872.1}; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain SM101 / Type A).;"
L3_072_057G1_scaffold_235_20
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20157..21221)
DNA (1065bp) protein (355aa)
Uncharacterized protein n=2 Tax=Clostridium perfringens RepID=Q8XH37_CLOPE
sporulation integral membrane protein YtvI
Uncharacterized protein {ECO:0000313|EMBL:BAB82354.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
L3_072_057G1_scaffold_235_21
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21233..22393)
DNA (1161bp) protein (387aa)
Cysteine desulfurase family protein n=1 Tax=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) RepID=Q0TM03_CLOP1
cysteine desulfurase
Cysteine desulfurase family protein {ECO:0000313|EMBL:ABG87422.1}; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain SM101 / Type A).;"
L3_072_057G1_scaffold_235_22
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22336..23052)
DNA (717bp) protein (239aa)
Translocator protein, LysE family n=2 Tax=Clostridium perfringens RepID=Q0SPR2_CLOPS
LysE family translocator
Translocator protein, LysE family {ECO:0000313|EMBL:ABG87815.1}; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain SM101 / Type A).;"
L3_072_057G1_scaffold_235_23
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23210..23443
DNA (234bp) protein (78aa)
Uncharacterized protein n=9 Tax=Clostridium perfringens RepID=H7D003_CLOPF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIA15778.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
Displaying 23 items

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