ggKbase home page

L3_072_057G1_scaffold_260

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_057G1_scaffold_260_1
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(156..1280)
DNA (1125bp) protein (375aa)
Stage V sporulation protein E n=8 Tax=Clostridium perfringens RepID=H7CXQ4_CLOPF
spoVE; stage V sporulation protein E
Stage V sporulation protein E {ECO:0000313|EMBL:EIA16709.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
L3_072_057G1_scaffold_260_2
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1308..2279)
DNA (972bp) protein (324aa)
mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase (EC:2.7.8.13)
Phospho-N-acetylmuramoyl-pentapeptide-transferase {ECO:0000256|HAMAP-Rule:MF_00038}; EC=2.7.8.13 {ECO:0000256|HAMAP-Rule:MF_00038};; UDP-MurNAc-pentapeptide phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00038}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
Phospho-N-acetylmuramoyl-pentapeptide-transferase n=9 Tax=Clostridium perfringens RepID=MRAY_CLOP1
L3_072_057G1_scaffold_260_3
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2329..3690)
DNA (1362bp) protein (454aa)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase {ECO:0000256|RuleBase:RU004136}; EC=6.3.2.10 {ECO:0000256|RuleBase:RU004136};; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase n=1 Tax=Clostridium perfringens C str. JGS1495 RepID=B1BJ00_CLOPF
murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
L3_072_057G1_scaffold_260_4
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3702..5156)
DNA (1455bp) protein (485aa)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; EC=6.3.2.13 {ECO:0000256|HAMAP-Rule:MF_00208};; Meso-A2pm-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; Meso-diaminopimelate-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC:6.3.2.13)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase n=1 Tax=Clostridium perfringens CPE str. F4969 RepID=B1RKF9_CLOPF
L3_072_057G1_scaffold_260_5
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5251..7470)
DNA (2220bp) protein (740aa)
Stage V sporulation protein D n=1 Tax=Clostridium perfringens NCTC 8239 RepID=B1RL06_CLOPF
Stage V sporulation protein D {ECO:0000313|EMBL:EDT25555.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
spoVD; stage V sporulation protein D
L3_072_057G1_scaffold_260_6
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7658..8086)
DNA (429bp) protein (143aa)
Cell division protein FtsL n=6 Tax=Clostridium perfringens RepID=H7CXQ9_CLOPF
cell division protein FtsL
Putative cell division protein FtsL {ECO:0000313|EMBL:EDT15067.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
L3_072_057G1_scaffold_260_7
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8158..9090)
DNA (933bp) protein (311aa)
mraW; S-adenosyl-methyltransferase MraW (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_01007}; EC=2.1.1.199 {ECO:0000256|HAMAP-Rule:MF_01007};; 16S rRNA m(4)C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01007}; rRNA (cytosine-N(4)-)-methyltransferase RsmH {ECO:0000256|HAMAP-Rule:MF_01007}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
Ribosomal RNA small subunit methyltransferase H n=9 Tax=Clostridium perfringens RepID=RSMH_CLOP1
L3_072_057G1_scaffold_260_8
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9638..10735)
DNA (1098bp) protein (366aa)
Ribosome-binding ATPase YchF n=10 Tax=Clostridium perfringens RepID=H7CXR1_CLOPF
ychF; GTP-dependent nucleic acid-binding protein EngD
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
L3_072_057G1_scaffold_260_9
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10894..11691
DNA (798bp) protein (266aa)
Delta-lactam-biosynthetic de-N-acetylase {ECO:0000313|EMBL:EDS80466.1}; EC=3.5.-.- {ECO:0000313|EMBL:EDS80466.1};; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
Polysaccharide deacetylase n=6 Tax=Clostridium perfringens RepID=H7CXR2_CLOPF
polysaccharide deacetylase
L3_072_057G1_scaffold_260_10
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11870..12505)
DNA (636bp) protein (212aa)
Methenyltetrahydrofolate cyclohydrolase n=1 Tax=Clostridium perfringens E str. JGS1987 RepID=B1BT41_CLOPF
Methenyltetrahydrofolate cyclohydrolase {ECO:0000313|EMBL:EDT15084.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
methenyltetrahydrofolate cyclohydrolase
L3_072_057G1_scaffold_260_11
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12534..13820)
DNA (1287bp) protein (429aa)
Putative uncharacterized protein n=1 Tax=Clostridium perfringens WAL-14572 RepID=H1CSK4_CLOPF
Uncharacterized protein {ECO:0000313|EMBL:EIA16719.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
hypothetical protein
L3_072_057G1_scaffold_260_12
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13820..14536)
DNA (717bp) protein (239aa)
Glycosyl transferase, WecB/TagA/CpsF family {ECO:0000313|EMBL:EDT22543.1}; EC=2.4.1.- {ECO:0000313|EMBL:EDT22543.1};; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
WecB/TagA/CpsF family glycosyl transferase (EC:2.4.1.-)
Glycosyl transferase, WecB/TagA/CpsF family n=2 Tax=Clostridium perfringens RepID=B1RB58_CLOPF
L3_072_057G1_scaffold_260_13
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14552..15649)
DNA (1098bp) protein (366aa)
TPR domain protein n=1 Tax=Clostridium perfringens NCTC 8239 RepID=B1RL14_CLOPF
TPR domain protein {ECO:0000313|EMBL:EDS80290.1}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
hypothetical protein
L3_072_057G1_scaffold_260_14
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15941..17668)
DNA (1728bp) protein (576aa)
phosphomannomutase (EC:5.4.2.8)
Phosphoglucomutase/phosphomannomutase family protein n=1 Tax=Clostridium perfringens NCTC 8239 RepID=B1RL15_CLOPF
Phosphoglucomutase/phosphomannomutase family protein {ECO:0000313|EMBL:EDT22551.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
L3_072_057G1_scaffold_260_15
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(17824..18432)
DNA (609bp) protein (203aa)
50S ribosomal protein L25 n=6 Tax=Clostridium perfringens RepID=RL25_CLOPE
50S ribosomal protein L25
50S ribosomal protein L25 {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023358}; General stress protein CTC {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023360}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
L3_072_057G1_scaffold_260_16
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18563..20560)
DNA (1998bp) protein (666aa)
Fibronectin type III domain protein n=1 Tax=Clostridium perfringens B str. ATCC 3626 RepID=B1RB54_CLOPF
Fibronectin type III domain protein {ECO:0000313|EMBL:EDT22546.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
fibronectin type III
Displaying 16 items

View Taxonomy