ggKbase home page

L3_072_123G1_scaffold_9

Search features with annotation key words

Displaying items 1-30 of 303 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_123G1_scaffold_9_1
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

613..1443
DNA (831bp) protein (277aa)
Lipoprotein n=4 Tax=Lactobacillus rhamnosus RepID=C7TIM0_LACRL
metQ; ABC transporter substrate-binding protein, NLPA lipoprotein
Lipoprotein {ECO:0000256|PIRNR:PIRNR002854}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_123G1_scaffold_9_2
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

1462..2514
DNA (1053bp) protein (351aa)
Methionine import ATP-binding protein MetN {ECO:0000256|HAMAP-Rule:MF_01719}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01719};; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
ABC transporter family protein n=5 Tax=Lactobacillus rhamnosus RepID=G7UYY2_LACRH
ABC transporter family protein
L3_072_123G1_scaffold_9_3
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

2519..3208
DNA (690bp) protein (230aa)
ABC-type metal ion transport system, permease component n=10 Tax=Lactobacillus rhamnosus RepID=B5QL64_LACRH
metal ion ABC transporter permease
Methionine ABC transporter permease {ECO:0000313|EMBL:KIC97356.1}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
L3_072_123G1_scaffold_9_4
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

3389..4156
DNA (768bp) protein (256aa)
Fe-S cluster assembly ABC-type transport system, ATPase component n=11 Tax=Lactobacillus rhamnosus RepID=B5QL63_LACRH
sufC; feS assembly ATPase SufC
Iron-sulfur cluster assembly ATPase protein SufC {ECO:0000313|EMBL:EKS51304.1}; TaxID=1203258 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LRHMDP2.;"
L3_072_123G1_scaffold_9_5
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

4149..5180
DNA (1032bp) protein (344aa)
ABC transporter, Fe-S cluster assembly transporter permease component n=5 Tax=Lactobacillus rhamnosus RepID=C7TIM4_LACRL
sufD; Fe-S cluster assembly ABC transporter permease
ABC transporter permease {ECO:0000313|EMBL:KIC97354.1}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
L3_072_123G1_scaffold_9_6
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

5173..6369
DNA (1197bp) protein (399aa)
Cysteine desulfurase {ECO:0000256|SAAS:SAAS00062216}; EC=2.8.1.7 {ECO:0000256|SAAS:SAAS00062216};; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
Cysteine desulfurase n=4 Tax=Lactobacillus rhamnosus RepID=C7TIM5_LACRL
sufS; cysteine desulfurase
L3_072_123G1_scaffold_9_7
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

6356..6802
DNA (447bp) protein (149aa)
Fe-S cluster formation protein, NifU-like protein n=8 Tax=Lactobacillus rhamnosus RepID=B5QL60_LACRH
sufA_nifU; Fe-S assembly protein SufA
Putative iron-sulfur cluster assembly scaffold protein for SUF system SufE2 {ECO:0000313|EMBL:EKS51307.1}; TaxID=1203258 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LRHMDP2.;"
L3_072_123G1_scaffold_9_8
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

6795..8231
DNA (1437bp) protein (479aa)
Fe-S assembly protein SufB, SUF system n=9 Tax=Lactobacillus rhamnosus RepID=C7TIM7_LACRL
sufB; feS assembly protein SufB
Fe-S assembly protein SufB {ECO:0000313|EMBL:EGF35128.1}; TaxID=947828 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus MTCC 5462.;"
L3_072_123G1_scaffold_9_9
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

8473..8655
DNA (183bp) protein (61aa)
Conserved protein n=12 Tax=Lactobacillus rhamnosus RepID=C7TBV6_LACRG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKS51309.1}; TaxID=1203258 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LRHMDP2.;"
L3_072_123G1_scaffold_9_10
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

8990..9370
DNA (381bp) protein (127aa)
Conserved protein n=5 Tax=Lactobacillus rhamnosus RepID=C7TIM9_LACRL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KIC97349.1}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
L3_072_123G1_scaffold_9_11
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

9431..10399
DNA (969bp) protein (323aa)
Conserved protein n=4 Tax=Lactobacillus rhamnosus RepID=C7TIN0_LACRL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP73896.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_123G1_scaffold_9_12
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

11063..11950
DNA (888bp) protein (296aa)
Transcriptional regulator n=6 Tax=Lactobacillus rhamnosus RepID=C7TBV9_LACRG
helix-turn-helix family protein
Transcriptional regulator, xre family {ECO:0000313|EMBL:EKS51312.1}; TaxID=1203258 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LRHMDP2.;"
L3_072_123G1_scaffold_9_13
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(12142..12642)
DNA (501bp) protein (167aa)
Universal stress protein n=12 Tax=Lactobacillus rhamnosus RepID=B5QL53_LACRH
universal stress family protein
Universal stress protein {ECO:0000256|PIRNR:PIRNR006276}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_123G1_scaffold_9_14
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(12703..12981)
DNA (279bp) protein (93aa)
Conserved protein n=8 Tax=Lactobacillus rhamnosus RepID=C7TBW1_LACRG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKS51314.1}; TaxID=1203258 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LRHMDP2.;"
L3_072_123G1_scaffold_9_15
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(13725..15113)
DNA (1389bp) protein (463aa)
ATPase n=3 Tax=Lactobacillus RepID=S5A468_LACRH
ATPase
Recombination factor protein RarA {ECO:0000313|EMBL:EEN80556.1}; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
L3_072_123G1_scaffold_9_16
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

15361..17322
DNA (1962bp) protein (654aa)
Glutathione biosynthesis bifunctional protein n=4 Tax=Lactobacillus rhamnosus RepID=C7TIN6_LACRL
gshAB; amino acid ligase
Putative glutamate--cysteine ligase/gamma-glutamylcysteine synthetase {ECO:0000313|EMBL:EEN80557.1}; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
L3_072_123G1_scaffold_9_17
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(17504..17926)
DNA (423bp) protein (141aa)
Conserved protein n=4 Tax=Lactobacillus rhamnosus RepID=C7TIN7_LACRL
Hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP73905.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_123G1_scaffold_9_18
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

18091..18699
DNA (609bp) protein (203aa)
UPF0637 protein LC705_01233 n=4 Tax=Lactobacillus rhamnosus RepID=C7TIN8_LACRL
hypothetical protein
UPF0637 protein LOCK908_1267 {ECO:0000256|HAMAP-Rule:MF_01851}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_123G1_scaffold_9_19
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

18865..19530
DNA (666bp) protein (222aa)
L-serine dehydratase, iron-sulfur-dependent, beta subunit n=8 Tax=Lactobacillus rhamnosus RepID=C7TIN9_LACRL
L-serine dehydratase, beta subunit
L-serine dehydratase, beta subunit {ECO:0000313|EMBL:AGP73907.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_123G1_scaffold_9_20
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

19578..20447
DNA (870bp) protein (290aa)
L-serine dehydratase, iron-sulfur-dependent, alpha subunit {ECO:0000313|EMBL:EEN80561.1}; EC=4.3.1.17 {ECO:0000313|EMBL:EEN80561.1};; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
L-serine deaminase n=5 Tax=Lactobacillus rhamnosus RepID=B5QL45_LACRH
sdhA; L-serine dehydratase, iron-sulfur-dependent, subunit alpha
L3_072_123G1_scaffold_9_21
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

20541..21233
DNA (693bp) protein (231aa)
Phosphoglycerate mutase family protein {ECO:0000313|EMBL:EEN80562.1}; EC=5.4.2.- {ECO:0000313|EMBL:EEN80562.1};; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
Phosphoglycerate mutase family protein n=6 Tax=Lactobacillus rhamnosus RepID=C7TIP1_LACRL
histidine phosphatase super family protein
L3_072_123G1_scaffold_9_22
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

21417..22253
DNA (837bp) protein (279aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
Peptide methionine sulfoxide reductase MsrA n=5 Tax=Lactobacillus rhamnosus RepID=S5A4H1_LACRH
msrA; peptide-methionine (S)-S-oxide reductase
L3_072_123G1_scaffold_9_23
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

22275..23210
DNA (936bp) protein (312aa)
Short-chain alcohol dehydrogenase n=1 Tax=Lactobacillus rhamnosus (strain ATCC 53103 / GG) RepID=C7TBX2_LACRG
Oxidoreductase, short chain dehydrogenase/reductase family protein {ECO:0000313|EMBL:EEN80564.1}; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
short-chain alcohol dehydrogenase
L3_072_123G1_scaffold_9_24
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

23437..24168
DNA (732bp) protein (244aa)
Nicotinamide mononucleotide transporter n=5 Tax=Lactobacillus rhamnosus RepID=C7TBX3_LACRG
nicotinamide mononucleotide transporter
Membrane protein {ECO:0000313|EMBL:KIC97336.1}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
L3_072_123G1_scaffold_9_25
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

24244..24972
DNA (729bp) protein (243aa)
Deoxyadenosine kinase / Deoxyguanosine kinase {ECO:0000313|EMBL:EKS51326.1}; EC=2.7.1.113 {ECO:0000313|EMBL:EKS51326.1};; EC=2.7.1.76 {ECO:0000313|EMBL:EKS51326.1};; TaxID=1203258 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LRHMDP2.;"
Deoxynucleoside kinase n=8 Tax=Lactobacillus rhamnosus RepID=C7TIP5_LACRL
deoxynucleoside kinase family protein
L3_072_123G1_scaffold_9_26
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

25234..26046
DNA (813bp) protein (271aa)
Histidinol phosphatase related hydrolase of the PHP family n=5 Tax=Lactobacillus rhamnosus RepID=C7TIP6_LACRL
PHP domain-containing protein
Histidinol phosphatase {ECO:0000313|EMBL:KIC97334.1}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
L3_072_123G1_scaffold_9_27
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(26102..27742)
DNA (1641bp) protein (547aa)
ABC transporter, oligopeptide-binding protein n=3 Tax=Lactobacillus rhamnosus RepID=C7TIP7_LACRL
oppA; oligopeptide ABC transporter substrate-binding protein
ABC transporter, substrate-binding protein, family 5 {ECO:0000313|EMBL:EEN80568.1}; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
L3_072_123G1_scaffold_9_28
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(27873..28778)
DNA (906bp) protein (302aa)
Two component sensor transduction histidine kinase n=5 Tax=Lactobacillus rhamnosus RepID=C7TIP8_LACRL
histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein
Signal transduction histidine kinase {ECO:0000313|EMBL:AGP73916.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_123G1_scaffold_9_29
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(28794..29468)
DNA (675bp) protein (225aa)
Two-component response regulator n=5 Tax=Lactobacillus rhamnosus RepID=C7TIP9_LACRL
transcriptional regulatory, C terminal family protein
Putative response regulator {ECO:0000313|EMBL:AGP73917.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_123G1_scaffold_9_30
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

29614..30543
DNA (930bp) protein (310aa)
ABC transporter, ATPase component n=5 Tax=Lactobacillus rhamnosus RepID=C7TIQ0_LACRL
ABC transporter family protein
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EEN80571.1}; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
Displaying items 1-30 of 303 in total

View Taxonomy