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L3_072_123G1_scaffold_190

Search features with annotation key words

Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_123G1_scaffold_190_1
Campylobacter jejuni, Campylobacter, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30..827)
DNA (798bp) protein (266aa)
Phosphotransferase enzyme family protein n=1 Tax=Clostridium difficile P42 RepID=T4P8E8_CLODI
Aph2 {ECO:0000313|EMBL:AAW34147.1}; TaxID=197 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter.;" source="Campylobacter jejuni.;"
hypothetical protein
L3_072_123G1_scaffold_190_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(943..1488)
DNA (546bp) protein (182aa)
Uncharacterized protein n=6 Tax=Bacteria RepID=D5Q4H1_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EFH07212.1}; TaxID=525259 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile NAP08.;"
hypothetical protein
L3_072_123G1_scaffold_190_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1673..1978)
DNA (306bp) protein (102aa)
Uncharacterized protein n=5 Tax=Clostridium difficile RepID=D5Q4H2_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EFH07213.1}; TaxID=525259 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile NAP08.;"
hypothetical protein
L3_072_123G1_scaffold_190_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1975..4095)
DNA (2121bp) protein (707aa)
TnpX site-specific recombinase n=4 Tax=Clostridium difficile RepID=D5Q4H3_CLODI
TnpX site-specific recombinase {ECO:0000313|EMBL:EFH07214.1}; TaxID=525259 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile NAP08.;"
Site-specific recombinases, DNA invertase Pin homologs
L3_072_123G1_scaffold_190_5
Enterococcus faecalis, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(4271..10861)
DNA (6591bp) protein (2197aa)
Methyltransferase domain protein n=1 Tax=Clostridium difficile P42 RepID=T4PEC8_CLODI
helicase
Uncharacterized protein {ECO:0000313|EMBL:EOK00151.1}; TaxID=1169307 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecalis EnGen0359.;"
L3_072_123G1_scaffold_190_6
Enterococcus faecalis, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(10944..11747)
DNA (804bp) protein (268aa)
Uncharacterized protein n=16 Tax=Bacteria RepID=C9YMI7_CLODR
putative conjugative transposon proteinTn1549-like, CTn2-Orf17
Uncharacterized protein {ECO:0000313|EMBL:EOK00150.1}; TaxID=1169307 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecalis EnGen0359.;"
L3_072_123G1_scaffold_190_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11832..13538)
DNA (1707bp) protein (569aa)
DNA topoisomerase {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608}; EC=5.99.1.2 {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608};; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
DNA topoisomerase n=2 Tax=Clostridium difficile RepID=T4PE91_CLODI
DNA topoisomerase
L3_072_123G1_scaffold_190_8
Enterococcus faecalis, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(13633..15174)
DNA (1542bp) protein (514aa)
Uncharacterized protein n=12 Tax=Firmicutes RepID=R3H439_ENTFL
cell surface protein
Uncharacterized protein {ECO:0000313|EMBL:EOK00148.1}; TaxID=1169307 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecalis EnGen0359.;"
L3_072_123G1_scaffold_190_9
Enterococcus faecalis, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(15149..15388)
DNA (240bp) protein (80aa)
Uncharacterized protein n=10 Tax=Firmicutes RepID=R3H3N0_ENTFL
Uncharacterized protein {ECO:0000313|EMBL:EOK00147.1}; TaxID=1169307 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecalis EnGen0359.;"
conjugative transposon protein
L3_072_123G1_scaffold_190_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15400..17532)
DNA (2133bp) protein (711aa)
Uncharacterized protein n=11 Tax=Firmicutes RepID=C9YMI4_CLODR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE04613.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L3_072_123G1_scaffold_190_11
Enterococcus faecalis, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(17536..19929)
DNA (2394bp) protein (798aa)
AAA-like domain protein n=2 Tax=Clostridium difficile RepID=T4P8F9_CLODI
conjugal transfer protein
Uncharacterized protein {ECO:0000313|EMBL:EOK00145.1}; TaxID=1169307 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecalis EnGen0359.;"
L3_072_123G1_scaffold_190_12
Enterococcus faecalis, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(19877..20266)
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Enterococcus faecalis EnGen0359 RepID=R3JUD1_ENTFL
Uncharacterized protein {ECO:0000313|EMBL:EOK00144.1}; TaxID=1169307 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecalis EnGen0359.;"
hypothetical protein
L3_072_123G1_scaffold_190_13
Enterococcus faecalis, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(20270..20530)
DNA (261bp) protein (87aa)
Uncharacterized protein n=7 Tax=Firmicutes RepID=R3H434_ENTFL
Uncharacterized protein {ECO:0000313|EMBL:EOK00143.1}; TaxID=1169307 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecalis EnGen0359.;"
hypothetical protein
L3_072_123G1_scaffold_190_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20548..21411)
DNA (864bp) protein (288aa)
Uncharacterized protein n=12 Tax=Firmicutes RepID=R3H3M6_ENTFL
conjugative transposon membrane protein
Putative conjugative transposon membrane protein {ECO:0000313|EMBL:CBE04609.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L3_072_123G1_scaffold_190_15
Streptococcus agalactiae, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(21431..21646)
DNA (216bp) protein (72aa)
Conjugative transposon membrane protein n=20 Tax=Firmicutes RepID=E8QBQ4_STRED
hypothetical protein
Conjugal transfer protein {ECO:0000313|EMBL:AIK71210.1}; TaxID=1311 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.;" source="Streptococcus agalactiae.;"
L3_072_123G1_scaffold_190_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21650..21961)
DNA (312bp) protein (104aa)
Single-strand binding family protein n=2 Tax=Clostridium difficile RepID=T4PED8_CLODI
conjugal transfer protein
Putative conjugal transfer protein (Putative single-stranded dna binding protein) {ECO:0000313|EMBL:CBE04587.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L3_072_123G1_scaffold_190_17
Enterococcus faecalis, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(22125..23909)
DNA (1785bp) protein (595aa)
TraG family protein n=8 Tax=Firmicutes RepID=R3JUC7_ENTFL
TraG family protein {ECO:0000313|EMBL:EOK00139.1}; TaxID=1169307 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecalis EnGen0359.;"
putative conjugal transfer protein
L3_072_123G1_scaffold_190_18
Enterococcus faecalis, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(23906..24391)
DNA (486bp) protein (162aa)
Uncharacterized protein n=7 Tax=Firmicutes RepID=R3H428_ENTFL
Uncharacterized protein {ECO:0000313|EMBL:EOK00138.1}; TaxID=1169307 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecalis EnGen0359.;"
putative conjugative transposon proteinTn1549-like, CTn5-Orf4
L3_072_123G1_scaffold_190_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24393..25415)
DNA (1023bp) protein (341aa)
Uncharacterized protein n=8 Tax=Firmicutes RepID=R3H3M2_ENTFL
conjugative transposon protein
Putative conjugative transposon protein {ECO:0000313|EMBL:CBE04528.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L3_072_123G1_scaffold_190_20
Enterococcus faecalis, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(25501..25782)
DNA (282bp) protein (94aa)
Uncharacterized protein n=6 Tax=Firmicutes RepID=R3JFU0_ENTFL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EOK00136.1}; TaxID=1169307 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecalis EnGen0359.;"
L3_072_123G1_scaffold_190_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25801..27435)
DNA (1635bp) protein (545aa)
23S rRNA (Uracil-5-)-methyltransferase RumA n=3 Tax=Clostridium difficile RepID=T4PEE3_CLODI
Fusion of rumA/CD3393 and CD1844A {ECO:0000313|EMBL:CEK00100.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Fusion of rumA/CD3393 and CD1844A
L3_072_123G1_scaffold_190_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27610..29370)
DNA (1761bp) protein (587aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
pyk; Pyruvate kinase (PK) (EC:2.7.1.40)
Pyruvate kinase n=125 Tax=Clostridium difficile RepID=T3G1D8_CLODC
L3_072_123G1_scaffold_190_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29422..30381)
DNA (960bp) protein (320aa)
ATP-dependent 6-phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339}; Short=ATP-PFK {ECO:0000256|HAMAP-Rule:MF_00339};; Short=Phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339};; EC=2.7.1.11 {ECO:0000256|HAMAP-Rule:MF_00339};; Phosphohexokinase {ECO:0000256|HAMAP-Rule:MF_00339}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
6-phosphofructokinase n=204 Tax=Clostridium difficile RepID=K6PF_CLOD6
6-phosphofructokinase
L3_072_123G1_scaffold_190_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30590..34159)
DNA (3570bp) protein (1190aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
DNA polymerase III alpha subunit n=141 Tax=Clostridium difficile RepID=C9XRY5_CLODC
dnaE; DNA polymerase III DnaE
L3_072_123G1_scaffold_190_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34316..35263)
DNA (948bp) protein (316aa)
Putative sporulation transcription regulator WhiA n=198 Tax=Clostridium difficile RepID=WHIA_CLOD6
hypothetical protein
Putative sporulation transcription regulator WhiA {ECO:0000256|HAMAP-Rule:MF_01420, ECO:0000256|SAAS:SAAS00005305}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_072_123G1_scaffold_190_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35280..35705)
DNA (426bp) protein (142aa)
Hydrolase, NUDIX family n=205 Tax=Clostridium difficile RepID=D5Q7B7_CLODI
DNA repair protein
Putative hydrolase, NUDIX family {ECO:0000313|EMBL:CCL23847.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_072_123G1_scaffold_190_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35774..36880)
DNA (1107bp) protein (369aa)
Putative gluconeogenesis factor n=173 Tax=Clostridium difficile RepID=C9XRY8_CLODC
hypothetical protein
Putative gluconeogenesis factor {ECO:0000256|HAMAP-Rule:MF_00973}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_072_123G1_scaffold_190_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36892..37749)
DNA (858bp) protein (286aa)
UPF0042 nucleotide-binding protein QU3_3529 n=2 Tax=Clostridium difficile RepID=T4PEB1_CLODI
glmZ(sRNA)-inactivating NTPase
Nucleotide-binding protein HMPREF0220_2799 {ECO:0000256|HAMAP-Rule:MF_00636}; TaxID=525259 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile NAP08.;"
L3_072_123G1_scaffold_190_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(37780..38493)
DNA (714bp) protein (238aa)
PHP domain protein n=184 Tax=Clostridium difficile RepID=T3G4J2_CLODC
phosphoesterase
Phosphoesterase {ECO:0000313|EMBL:CKG74782.1}; Putative phosphoesterase {ECO:0000313|EMBL:CEK00110.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_072_123G1_scaffold_190_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(38497..39450)
DNA (954bp) protein (318aa)
UDP-N-acetylenolpyruvoylglucosamine reductase {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00041869}; EC=1.3.1.98 {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00057125};; UDP-N-acetylmuramate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00037}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
UDP-N-acetylenolpyruvoylglucosamine reductase n=6 Tax=Clostridium difficile RepID=D5Q7B3_CLODI
murB; UDP-N-acetylenolpyruvoylglucosamine reductase
Displaying items 1-30 of 45 in total

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