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L3_072_123G1_scaffold_220

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_123G1_scaffold_220_1
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2..157)
DNA (156bp) protein (52aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JC05_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77299.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L3_072_123G1_scaffold_220_2
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(207..572)
DNA (366bp) protein (122aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JC06_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77300.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L3_072_123G1_scaffold_220_3
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(628..1008)
DNA (381bp) protein (127aa)
hypothetical protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI000362C516
Uncharacterized protein {ECO:0000313|EMBL:EES77301.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L3_072_123G1_scaffold_220_4
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1116..1376)
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JC08_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77302.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L3_072_123G1_scaffold_220_5
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1761..3491)
DNA (1731bp) protein (577aa)
Uncharacterized protein n=1 Tax=Bacillus cereus Rock1-3 RepID=C2TXK4_BACCE
Uncharacterized protein {ECO:0000313|EMBL:CDA09269.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
hypothetical protein
L3_072_123G1_scaffold_220_6
Coprococcus eutactus, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3516..5516)
DNA (2001bp) protein (667aa)
type II restriction endonuclease n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0002E609C0
AlwI restriction endonuclease {ECO:0000313|EMBL:EDP27724.1}; TaxID=411474 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus eutactus ATCC 27759.;"
AlwI restriction endonuclease-like protein
L3_072_123G1_scaffold_220_7
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5501..7420)
DNA (1920bp) protein (640aa)
Site-specific DNA-methyltransferase (adenine-specific) {ECO:0000256|RuleBase:RU361257}; EC=2.1.1.72 {ECO:0000256|RuleBase:RU361257};; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
dpnM; modification methylase DpnIIA (EC:2.1.1.72)
DNA adenine methylase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JC11_9FIRM
L3_072_123G1_scaffold_220_8
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7420..7638)
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JC12_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77306.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
transcriptional regulator
L3_072_123G1_scaffold_220_9
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7780..8391)
DNA (612bp) protein (204aa)
Methyltransferase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362026};; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 5_1_57FAA RepID=F7KV98_9FIRM
hypothetical protein
L3_072_123G1_scaffold_220_10
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8640..9014)
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2PQ28_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK45864.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
hypothetical protein
L3_072_123G1_scaffold_220_11
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9019..10410)
DNA (1392bp) protein (464aa)
Plasmid recombination enzyme n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2P5T8_9FIRM
Plasmid recombination enzyme {ECO:0000313|EMBL:ERK45865.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
Plasmid recombination enzyme.
L3_072_123G1_scaffold_220_12
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10678..10908)
DNA (231bp) protein (77aa)
Putative uncharacterized protein n=2 Tax=unclassified Lachnospiraceae RepID=E5XIB9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFV18949.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
hypothetical protein
L3_072_123G1_scaffold_220_13
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11023..12360)
DNA (1338bp) protein (446aa)
Virulence-associated protein E n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2QX36_9FIRM
Virulence-associated protein E {ECO:0000313|EMBL:ERK45868.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
Predicted P-loop ATPase and inactivated derivatives
L3_072_123G1_scaffold_220_14
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12305..12979)
DNA (675bp) protein (225aa)
Putative uncharacterized protein n=2 Tax=unclassified Lachnospiraceae RepID=E5XIB7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFV18947.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
DNA primase (bacterial type)
L3_072_123G1_scaffold_220_15
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13167..13337)
DNA (171bp) protein (57aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=F3BBK7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG82318.1}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
L3_072_123G1_scaffold_220_16
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13355..14407)
DNA (1053bp) protein (351aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JC19_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77313.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
phage integrase family protein
L3_072_123G1_scaffold_220_17
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14421..14612)
DNA (192bp) protein (64aa)
Gp27 protein n=1 Tax=Lachnospiraceae bacterium 8_1_57FAA RepID=E5XIB4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY31469.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
hypothetical protein
L3_072_123G1_scaffold_220_18
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14816..15349
DNA (534bp) protein (178aa)
DNA-binding helix-turn-helix protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2PQ37_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:ERK45874.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
Predicted transcriptional regulators
L3_072_123G1_scaffold_220_19
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15616..16809)
DNA (1194bp) protein (398aa)
translation elongation factor 1A (EF-1A/EF-Tu) (EC:3.6.5.3)
Elongation factor Tu n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JC22_9FIRM
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L3_072_123G1_scaffold_220_20
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17145..19265)
DNA (2121bp) protein (707aa)
Elongation factor G n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JC23_9FIRM
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
elongation factor G
L3_072_123G1_scaffold_220_21
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(19283..19753)
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=3 Tax=root RepID=C6JC24_9FIRM
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
30S ribosomal protein S7
L3_072_123G1_scaffold_220_22
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(19978..20394)
DNA (417bp) protein (139aa)
30S ribosomal protein S12 n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JC25_9FIRM
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
SSU ribosomal protein S12P
L3_072_123G1_scaffold_220_23
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21178..22191
DNA (1014bp) protein (338aa)
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CGN7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD77359.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
L3_072_123G1_scaffold_220_24
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22305..23405
DNA (1101bp) protein (367aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JC27_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD77361.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L3_072_123G1_scaffold_220_25
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23658..24887)
DNA (1230bp) protein (410aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JC29_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77323.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L3_072_123G1_scaffold_220_26
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24901..25719)
DNA (819bp) protein (273aa)
Serine/threonine protein phosphatase (EC:3.1.3.16)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JC30_9FIRM
Serine/threonine phosphatase {ECO:0000313|EMBL:CDD77366.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
L3_072_123G1_scaffold_220_27
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25700..27607)
DNA (1908bp) protein (636aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JC31_9FIRM
Mitogen-activated protein kinase kinase 2 {ECO:0000313|EMBL:CDD77368.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Serine/threonine protein kinase
L3_072_123G1_scaffold_220_28
unknown

Not on your lists

comp(27701..27856)
DNA (156bp) protein (52aa)

This feature has no annotations

L3_072_123G1_scaffold_220_29
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27917..31672)
DNA (3756bp) protein (1252aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JC32_9FIRM
L3_072_123G1_scaffold_220_30
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31690..35550)
DNA (3861bp) protein (1287aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=2 Tax=Ruminococcus RepID=C6JC33_9FIRM
Displaying items 1-30 of 49 in total

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