ggKbase home page

L3_072_123G1_scaffold_367

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_123G1_scaffold_367_1
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(104..664)
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JFH9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76162.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Protein of unknown function (DUF1393).
L3_072_123G1_scaffold_367_2
Ruminococcus sp. CAG:90, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1134..1331
DNA (198bp) protein (66aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R7GU03_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE30218.1}; TaxID=1262968 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:90.;"
L3_072_123G1_scaffold_367_3
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1393..2571
DNA (1179bp) protein (393aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CPZ1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD80040.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L3_072_123G1_scaffold_367_4
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2755..3633)
DNA (879bp) protein (293aa)
Amidohydrolase n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CP58_9FIRM
Amidohydrolase {ECO:0000313|EMBL:CDD80039.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Imidazolonepropionase and related amidohydrolases
L3_072_123G1_scaffold_367_5
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3773..4924)
DNA (1152bp) protein (384aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JFI4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76167.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Alanyl-tRNA synthetase
L3_072_123G1_scaffold_367_6
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5399..5905
DNA (507bp) protein (169aa)
RNA polymerase sigma factor n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CGQ2_9FIRM
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
RNA polymerase sigma factor, sigma-70 family
L3_072_123G1_scaffold_367_7
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5906..6400
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CH67_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD77381.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L3_072_123G1_scaffold_367_8
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6405..7169
DNA (765bp) protein (255aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CJ85_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD77383.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L3_072_123G1_scaffold_367_9
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7233..8201)
DNA (969bp) protein (323aa)
birA, biotin-[acetyl-CoA-carboxylase] ligase region (EC:6.3.4.15)
Biotin-[acetyl-CoA-carboxylase] ligase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JFI8_9FIRM
Bifunctional ligase/repressor BirA {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--[acetyl-CoA-carboxylase] ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--protein ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin-[acetyl-CoA carboxylase] synthetase {ECO:0000256|HAMAP-Rule:MF_00978}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L3_072_123G1_scaffold_367_10
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8379..8597)
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CI22_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD77387.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L3_072_123G1_scaffold_367_11
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8936..9628)
DNA (693bp) protein (231aa)
LrgB family protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CHF4_9FIRM
LrgB family protein {ECO:0000313|EMBL:CDD77390.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
LrgB family protein
L3_072_123G1_scaffold_367_12
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9625..9993)
DNA (369bp) protein (123aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JFJ2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD77392.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Putative effector of murein hydrolase LrgA
L3_072_123G1_scaffold_367_13
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10013..10480)
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JFJ3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76176.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L3_072_123G1_scaffold_367_14
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10690..11121)
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JFJ4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76177.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L3_072_123G1_scaffold_367_15
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11187..11645)
DNA (459bp) protein (153aa)
Phosphoesterase {ECO:0000256|RuleBase:RU362039}; EC=3.1.4.- {ECO:0000256|RuleBase:RU362039};; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
MJ0936 family phosphodiesterase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JFJ5_9FIRM
phosphoesterase, MJ0936 family
L3_072_123G1_scaffold_367_16
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11706..12947)
DNA (1242bp) protein (414aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CGS0_9FIRM
TIGR00375 family protein {ECO:0000313|EMBL:EES76179.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L3_072_123G1_scaffold_367_17
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13018..13605)
DNA (588bp) protein (196aa)
metal-dependent hydrolase n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0002DB55F6
Uncharacterized protein {ECO:0000313|EMBL:CDD77400.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Predicted metal-dependent hydrolase
L3_072_123G1_scaffold_367_18
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13665..14468)
DNA (804bp) protein (268aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JFJ8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD77401.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
uncharacterized domain HDIG
L3_072_123G1_scaffold_367_19
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14508..15491)
DNA (984bp) protein (328aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JFJ9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD77402.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L3_072_123G1_scaffold_367_20
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15819..16205
DNA (387bp) protein (129aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JFK0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76183.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L3_072_123G1_scaffold_367_21
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16202..16498
DNA (297bp) protein (99aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JFK1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD77404.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
plasmid stabilization protein RelE/StbE
L3_072_123G1_scaffold_367_22
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16714..18303
DNA (1590bp) protein (530aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CH92_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD77406.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Protein of unknown function (DUF1703)./Predicted AAA-ATPase.
L3_072_123G1_scaffold_367_23
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18870..19592
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JFK3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76186.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Response regulator of the LytR/AlgR family
L3_072_123G1_scaffold_367_24
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19593..20525
DNA (933bp) protein (311aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CJB2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD77408.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L3_072_123G1_scaffold_367_25
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20509..21339
DNA (831bp) protein (277aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CGS8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD77409.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
L3_072_123G1_scaffold_367_26
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21358..22245
DNA (888bp) protein (296aa)
Transcriptional regulator n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CHG8_9FIRM
Transcriptional regulator {ECO:0000313|EMBL:CDD77410.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
AraC-type DNA-binding domain-containing proteins
L3_072_123G1_scaffold_367_27
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22415..24682
DNA (2268bp) protein (756aa)
Alpha-1,4 glucan phosphorylase {ECO:0000256|RuleBase:RU000587}; EC=2.4.1.1 {ECO:0000256|RuleBase:RU000587};; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
glycogen/starch/alpha-glucan phosphorylases (EC:2.4.1.1)
Phosphorylase n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CH96_9FIRM
L3_072_123G1_scaffold_367_28
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24868..26079)
DNA (1212bp) protein (404aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CI44_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD77412.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L3_072_123G1_scaffold_367_29
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26458..27105
DNA (648bp) protein (216aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Predicted EndoIII-related endonuclease (EC:4.2.99.18)
Endonuclease III n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JFK9_9FIRM
L3_072_123G1_scaffold_367_30
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27384..27674)
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CPD9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD79785.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
Displaying items 1-30 of 36 in total

View Taxonomy