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L3_072_123G1_scaffold_378

Search features with annotation key words

Displaying items 1-30 of 69 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_123G1_scaffold_378_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2..427
DNA (426bp) protein (142aa)
ecoRIM; modification methylase (EC:2.1.1.72)
Modification methylase n=6 Tax=Bifidobacterium RepID=I3WHL7_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI83237.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_072_123G1_scaffold_378_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

941..1195
DNA (255bp) protein (85aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=K2M311_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKF16416.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_072_123G1_scaffold_378_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1284..1898)
DNA (615bp) protein (205aa)
pncA; pyrazinamidase/Nicotinamidase (EC:3.5.1.19)
PncA Pyrazinamidase/Nicotinamidase n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P198_BIFBP
Pyrazinamidase/nicotinamidase {ECO:0000313|EMBL:EKF16415.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_072_123G1_scaffold_378_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2006..2287)
DNA (282bp) protein (94aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P199_BIFBP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKE50034.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L3_072_123G1_scaffold_378_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2673..3389
DNA (717bp) protein (239aa)
glmS; glucosamine--fructose-6-phosphate aminotransferase GlmS (EC:2.6.1.16)
Class II glutamine amidotransferase n=2 Tax=Bifidobacterium bifidum RepID=E4V991_BIFBI
Class II glutamine amidotransferase {ECO:0000313|EMBL:EFR50183.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L3_072_123G1_scaffold_378_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3340..3693
DNA (354bp) protein (118aa)
Glucosamine-fructose-6-phosphate aminotransferase n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EM16_BIFBS
glmS; glucosamine-fructose-6-phosphate aminotransferase
Glucosamine-fructose-6-phosphate aminotransferase {ECO:0000313|EMBL:ADO53023.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_072_123G1_scaffold_378_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4043..5398)
DNA (1356bp) protein (452aa)
Xanthine/uracil permease n=3 Tax=Bifidobacterium RepID=I3WHM3_BIFBI
uraA; xanthine/uracil permease
Xanthine/uracil permease {ECO:0000313|EMBL:EKE50570.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L3_072_123G1_scaffold_378_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5449..6030)
DNA (582bp) protein (194aa)
Xanthine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01184, ECO:0000256|SAAS:SAAS00064502}; Short=XPRTase {ECO:0000256|HAMAP-Rule:MF_01184};; EC=2.4.2.22 {ECO:0000256|HAMAP-Rule:MF_01184, ECO:0000256|SAAS:SAAS00064502};; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
Xanthine phosphoribosyltransferase n=2 Tax=Bifidobacterium bifidum RepID=E4V993_BIFBI
xpt; xanthine phosphoribosyl transferase
L3_072_123G1_scaffold_378_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6222..8225
DNA (2004bp) protein (668aa)
Acyltransferase family protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EM20_BIFBS
acyltransferase family protein
Acyltransferase family protein {ECO:0000313|EMBL:ADO53027.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_072_123G1_scaffold_378_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8289..10946
DNA (2658bp) protein (886aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
pcrA; ATP-dependent DNA helicase PcrA (EC:3.1.11.5)
ATP-dependent DNA helicase PcrA n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HT10_BIFBI
L3_072_123G1_scaffold_378_11
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11123..11521
DNA (399bp) protein (133aa)
Uncharacterized protein n=5 Tax=Bifidobacterium RepID=U2DNX3_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDB23855.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_072_123G1_scaffold_378_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11518..12732
DNA (1215bp) protein (405aa)
ABC transporter permease n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2IPA9_BIFBI
ABC transporter permease {ECO:0000313|EMBL:EKE50575.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
ABC transporter permease
L3_072_123G1_scaffold_378_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12739..13554
DNA (816bp) protein (272aa)
ATP-binding protein of ABC transporter system n=2 Tax=Bifidobacterium bifidum RepID=E3EM24_BIFBS
ABC transporter ATP-binding protein
ATP-binding protein of ABC transporter system {ECO:0000313|EMBL:ADO53031.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_072_123G1_scaffold_378_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


13758..14384
DNA (627bp) protein (209aa)
30S ribosomal protein S4 n=8 Tax=Bifidobacterium RepID=E3EM25_BIFBS
rpsD; 30S ribosomal protein S4
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_072_123G1_scaffold_378_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14519..16504)
DNA (1986bp) protein (662aa)
Acyltransferase n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HT17_BIFBI
Acyltransferase {ECO:0000313|EMBL:EKE50578.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
acyltransferase
L3_072_123G1_scaffold_378_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16884..17558
DNA (675bp) protein (225aa)
Phosphoglycerate mutase family protein n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V9A1_BIFBI
gpm2; phosphoglycerate mutase
Phosphoglycerate mutase family protein {ECO:0000313|EMBL:EFR50193.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L3_072_123G1_scaffold_378_17
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17679..18089
DNA (411bp) protein (137aa)
Secreted protein n=8 Tax=Bifidobacterium RepID=I3WHN3_BIFBI
hypothetical protein
Conserved hypothetical secreted protein {ECO:0000313|EMBL:CDB23284.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_072_123G1_scaffold_378_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18089..18328
DNA (240bp) protein (80aa)
Uncharacterized protein n=7 Tax=Bifidobacterium RepID=I3WHN4_BIFBI
hypothetical protein
Putative secreted protein {ECO:0000313|EMBL:KFI42864.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_072_123G1_scaffold_378_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


18396..21119
DNA (2724bp) protein (908aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
alaS; alanyl-tRNA synthetase (EC:6.1.1.7)
Alanine--tRNA ligase n=5 Tax=Bifidobacterium RepID=I3WHN5_BIFBI
L3_072_123G1_scaffold_378_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21128..21586
DNA (459bp) protein (153aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
Putative Holliday junction resolvase n=4 Tax=Bifidobacterium bifidum RepID=E4P1B5_BIFBP
endonuclease involved in recombination
L3_072_123G1_scaffold_378_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21598..22785
DNA (1188bp) protein (396aa)
Aminodeoxychorismate lyase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WHN7_BIFBI
aminodeoxychorismate lyase
Uncharacterized protein {ECO:0000313|EMBL:BAQ98014.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_072_123G1_scaffold_378_22
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22782..23252)
DNA (471bp) protein (157aa)
Conserved hypothetical membrane spanning protein n=2 Tax=Bifidobacterium RepID=E3EM33_BIFBS
hypothetical protein
Conserved hypothetical membrane spanning protein {ECO:0000313|EMBL:CDB23289.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_072_123G1_scaffold_378_23
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23299..24492
DNA (1194bp) protein (398aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Chorismate synthase n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GFV6_9BIFI
aroC; chorismate synthase
L3_072_123G1_scaffold_378_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24550..26172
DNA (1623bp) protein (541aa)
3-dehydroquinate synthase {ECO:0000313|EMBL:EFR50201.1}; EC=4.2.3.4 {ECO:0000313|EMBL:EFR50201.1};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
3-dehydroquinate synthase n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V9A9_BIFBI
aroB; shikimate kinase
L3_072_123G1_scaffold_378_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26262..26705
DNA (444bp) protein (148aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752};; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
aroQ; 3-dehydroquinate dehydratase (EC:4.2.1.10)
3-dehydroquinate dehydratase n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V9B0_BIFBI
L3_072_123G1_scaffold_378_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26791..27417
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GCW0_9BIFI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ERI82354.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_072_123G1_scaffold_378_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27492..28271)
DNA (780bp) protein (260aa)
Two component transcriptional regulator, LuxR family protein n=7 Tax=Bifidobacterium RepID=E3EM38_BIFBS
Response regulator receiver domain protein {ECO:0000313|EMBL:ERI82353.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
luxR; regulatory protein
L3_072_123G1_scaffold_378_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28407..29135)
DNA (729bp) protein (243aa)
Uncharacterized protein n=2 Tax=Bifidobacterium RepID=R6GFV8_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:ERI82352.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
putative fimbrial associated sortase
L3_072_123G1_scaffold_378_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29180..30847
DNA (1668bp) protein (556aa)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
CTP synthase n=7 Tax=Bifidobacterium RepID=E3EM40_BIFBS
pyrG; CTP synthase
L3_072_123G1_scaffold_378_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31069..32568
DNA (1500bp) protein (500aa)
FeS assembly protein SufB n=7 Tax=Bifidobacterium RepID=E3EM41_BIFBS
sufB; FeS assembly protein SufB
FeS assembly protein {ECO:0000313|EMBL:AFL04409.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Displaying items 1-30 of 69 in total

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