ggKbase home page

L3_072_123G1_scaffold_403

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_123G1_scaffold_403_1
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3..1127)
DNA (1125bp) protein (375aa)
Cell division protein FtsZ n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MP87_CLOSA
ftsZ; cell division protein FtsZ
Cell division protein FtsZ {ECO:0000256|HAMAP-Rule:MF_00909, ECO:0000256|RuleBase:RU000631}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_072_123G1_scaffold_403_2
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1114..2331)
DNA (1218bp) protein (406aa)
Cell division protein FtsA n=1 Tax=Clostridium sp. DL-VIII RepID=G7MCN2_9CLOT
Cell division protein FtsA {ECO:0000313|EMBL:EHI98375.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
ftsA; cell division protein FtsA
L3_072_123G1_scaffold_403_3
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2625..3680)
DNA (1056bp) protein (352aa)
Twitching motility protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HGP7_9CLOT
Twitching motility protein {ECO:0000313|EMBL:EEH98219.2}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
twitching motility family protein
L3_072_123G1_scaffold_403_4
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3788..4486)
DNA (699bp) protein (233aa)
RNA polymerase sigma factor n=2 Tax=Clostridium RepID=A6LSG7_CLOB8
sporulation sigma factor SigK
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium; acetobutylicum).;"
L3_072_123G1_scaffold_403_5
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4758..6359)
DNA (1602bp) protein (534aa)
Penicillin-binding protein 2 n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UXY9_CLOBO
penicillin binding transpeptidase domain protein
Penicillin binding transpeptidase domain protein {ECO:0000313|EMBL:AIY85062.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_072_123G1_scaffold_403_6
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6420..7037)
DNA (618bp) protein (206aa)
udk; uridine kinase (EC:2.7.1.48)
Uridine kinase {ECO:0000256|HAMAP-Rule:MF_00551, ECO:0000256|RuleBase:RU003825}; EC=2.7.1.48 {ECO:0000256|HAMAP-Rule:MF_00551, ECO:0000256|RuleBase:RU003825};; Cytidine monophosphokinase {ECO:0000256|HAMAP-Rule:MF_00551}; Uridine monophosphokinase {ECO:0000256|HAMAP-Rule:MF_00551}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
Uridine kinase n=1 Tax=Clostridium sp. CAG:265 RepID=R6KGG6_9CLOT
L3_072_123G1_scaffold_403_7
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7060..8295)
DNA (1236bp) protein (412aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H7Q8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH98223.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
peptidase U32
L3_072_123G1_scaffold_403_8
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8301..8945)
DNA (645bp) protein (215aa)
O-methyltransferase, family 3 n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MAP4_9CLOT
O-methyltransferase family protein {ECO:0000313|EMBL:AJG97849.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
O-methyltransferase, family 3
L3_072_123G1_scaffold_403_9
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8960..10012)
DNA (1053bp) protein (351aa)
Uncharacterized protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MSB1_CLOSA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGX42337.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_072_123G1_scaffold_403_10
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10095..11921)
DNA (1827bp) protein (609aa)
UPI0003D5C205 related cluster n=1 Tax=unknown RepID=UPI0003D5C205
GTP-binding protein TypA {ECO:0000313|EMBL:KHD15574.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
typA; GTP-binding protein TypA/BipA
L3_072_123G1_scaffold_403_11
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12058..13725)
DNA (1668bp) protein (556aa)
rnjA1; ribonuclease J 1 (EC:3.1.-.-)
Ribonuclease J 1 {ECO:0000313|EMBL:AGX42335.1}; EC=3.1.-.- {ECO:0000313|EMBL:AGX42335.1};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Ribonuclease J 1 n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MP12_CLOSA
L3_072_123G1_scaffold_403_12
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13766..14227)
DNA (462bp) protein (154aa)
Ferric uptake regulator, Fur family n=2 Tax=Clostridium RepID=A6LSG0_CLOB8
ferric uptake regulator family protein
Ferric uptake regulator family protein {ECO:0000313|EMBL:AJG97845.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
L3_072_123G1_scaffold_403_13
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14254..14523)
DNA (270bp) protein (90aa)
UPF0473 protein CLH_1128 n=1 Tax=Clostridium botulinum (strain Alaska E43 / Type E3) RepID=Y1128_CLOBA
hypothetical protein
UPF0473 protein UC77_14035 {ECO:0000256|HAMAP-Rule:MF_01448}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
L3_072_123G1_scaffold_403_14
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14599..15018)
DNA (420bp) protein (140aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
Putative Holliday junction resolvase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HEU1_9CLOT
hypothetical protein
L3_072_123G1_scaffold_403_15
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15071..15328)
DNA (258bp) protein (86aa)
UPF0297 protein CLH_1126 n=4 Tax=Clostridium botulinum RepID=Y1126_CLOBA
hypothetical protein
UPF0297 protein CLO_2635 {ECO:0000256|HAMAP-Rule:MF_01507}; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. 'BoNT E Beluga'.;"
L3_072_123G1_scaffold_403_16
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(15463..18102)
DNA (2640bp) protein (880aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
alaS; alanine--tRNA ligase (EC:6.1.1.7)
Alanyl-tRNA synthetase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H378_9CLOT
L3_072_123G1_scaffold_403_17
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18407..19438)
DNA (1032bp) protein (344aa)
Permease n=2 Tax=Clostridium botulinum B RepID=B2THM9_CLOBB
permease
Permease {ECO:0000313|EMBL:ACD24042.1}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
L3_072_123G1_scaffold_403_18
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19416..19916)
DNA (501bp) protein (167aa)
PRC-barrel domain protein n=2 Tax=Clostridium RepID=A6LSF4_CLOB8
PRC-barrel domain-containing protein
Photosystem reaction center subunit H {ECO:0000313|EMBL:ETD71506.1}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
L3_072_123G1_scaffold_403_19
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20031..21107)
DNA (1077bp) protein (359aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sartagoforme AAU1.;"
trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61)
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QIL9_9CLOT
L3_072_123G1_scaffold_403_20
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21117..21554)
DNA (438bp) protein (146aa)
FeS cluster assembly scaffold protein NifU n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H439_9CLOT
FeS cluster assembly scaffold protein NifU {ECO:0000313|EMBL:EEH98236.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
nifU; FeS cluster assembly scaffold protein NifU
L3_072_123G1_scaffold_403_21
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21557..22738)
DNA (1182bp) protein (394aa)
nifS; cysteine desulfurase NifS (EC:2.8.1.7)
Cysteine desulfurase IscS {ECO:0000256|HAMAP-Rule:MF_00331, ECO:0000256|SAAS:SAAS00038344}; EC=2.8.1.7 {ECO:0000256|HAMAP-Rule:MF_00331};; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
Cysteine desulfurase n=1 Tax=Clostridium colicanis 209318 RepID=N9Y1B4_9CLOT
L3_072_123G1_scaffold_403_22
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22751..23194)
DNA (444bp) protein (148aa)
Putative HTH-type transcriptional regulator IscR n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QJW7_9CLOT
Putative HTH-type transcriptional regulator IscR {ECO:0000313|EMBL:EKY27857.1}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
cymR; HTH-type transcriptional regulator CymR
L3_072_123G1_scaffold_403_23
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23349..25094
DNA (1746bp) protein (582aa)
Glycoside hydrolase n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8FUU5_CLOPA
Glycoside hydrolase {ECO:0000313|EMBL:ETD67197.1}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
glycoside hydrolase
L3_072_123G1_scaffold_403_24
Clostridium sp. CAG:265, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25143..26414)
DNA (1272bp) protein (424aa)
Predicted ATPase related to the helicase subunit of the Holliday junction resolvase n=1 Tax=Clostridium sp. CAG:265 RepID=R6KFV2_9CLOT
Predicted ATPase related to the helicase subunit of the Holliday junction resolvase {ECO:0000313|EMBL:CDB74018.1}; TaxID=1262787 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:265.;"
sigma-54 interaction domain protein
L3_072_123G1_scaffold_403_25
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26524..27321)
DNA (798bp) protein (266aa)
phosphonates import ATP-binding protein PhnC 2 (EC:3.6.3.28)
Phosphonates import ATP-binding protein PhnC 2 {ECO:0000313|EMBL:EES50679.1}; EC=3.6.3.28 {ECO:0000313|EMBL:EES50679.1};; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. 'BoNT E Beluga'.;"
Phosphonates import ATP-binding protein PhnC 2 n=2 Tax=Clostridium botulinum E RepID=B2V3T3_CLOBA
L3_072_123G1_scaffold_403_26
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27281..28207)
DNA (927bp) protein (309aa)
Branched-chain amino acid ABC transporter, permease protein n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QEJ4_9CLOT
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:EKY26346.1}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
ABC transporter
L3_072_123G1_scaffold_403_27
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28207..29208)
DNA (1002bp) protein (334aa)
ABC transporter substrate-binding protein n=1 Tax=Clostridium beijerinckii RepID=UPI0002DF0865
ABC transporter substrate binding protein {ECO:0000313|EMBL:EHI98348.1}; Flags: Precursor;; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
hypothetical protein
L3_072_123G1_scaffold_403_28
Clostridium bornimense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29490..30296
DNA (807bp) protein (269aa)
Mechanosensitive ion channel family protein n=1 Tax=Clostridium perfringens (strain SM101 / Type A) RepID=Q0SWG3_CLOPS
mechanosensitive ion channel family protein
Mechanosensitive ion channel family protein {ECO:0000313|EMBL:CDM68250.1}; TaxID=1216932 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium bornimense.;"
L3_072_123G1_scaffold_403_29
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30335..31006)
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FMB5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDG01769.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
hypothetical protein
Displaying 29 items

View Taxonomy