ggKbase home page

L3_072_123G1_scaffold_486

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_123G1_scaffold_486_1
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(166..1368)
DNA (1203bp) protein (401aa)
PolyA polymerase n=1 Tax=Clostridium sp. CAG:221 RepID=R6GPI8_9CLOT
poly A polymerase head domain protein
Poly A polymerase head domain protein {ECO:0000313|EMBL:AIY82523.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_072_123G1_scaffold_486_2
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1450..2619)
DNA (1170bp) protein (390aa)
yciB; putative L,D-transpeptidase YciB (EC:2.-.-.-)
Putative L,D-transpeptidase YciB {ECO:0000313|EMBL:AGX41099.1}; EC=2.-.-.- {ECO:0000313|EMBL:AGX41099.1};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Putative L,D-transpeptidase YciB n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MJW5_CLOSA
L3_072_123G1_scaffold_486_3
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2767..3570
DNA (804bp) protein (268aa)
Uncharacterized protein n=2 Tax=Clostridium botulinum B RepID=B2THD0_CLOBB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACD23390.1}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
L3_072_123G1_scaffold_486_4
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3637..4842
DNA (1206bp) protein (402aa)
Exonuclease SbcCD, D subunit n=1 Tax=Clostridium sordellii VPI 9048 RepID=T0CNF3_CLOSO
DNA repair exonuclease {ECO:0000313|EMBL:KJU71848.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
sbcD; exonuclease SbcCD, D subunit
L3_072_123G1_scaffold_486_5
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4843..7965
DNA (3123bp) protein (1041aa)
AAA domain protein n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4W0T4_CLOBI
AAA domain protein {ECO:0000313|EMBL:EQK46572.1}; TaxID=1233170 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 19299.;"
AAA domain protein
L3_072_123G1_scaffold_486_6
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8125..8964
DNA (840bp) protein (280aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
resE1; sensor histidine kinase ResE (EC:2.7.13.3)
Histidine kinase n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TL63_9CLOT
L3_072_123G1_scaffold_486_7
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9273..10415
DNA (1143bp) protein (381aa)
Uncharacterized protein n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FPP8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDG02724.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
hypothetical protein
L3_072_123G1_scaffold_486_8
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10412..11308)
DNA (897bp) protein (299aa)
Phosphatidylserine decarboxylase proenzyme {ECO:0000256|HAMAP-Rule:MF_00663, ECO:0000256|SAAS:SAAS00154492}; EC=4.1.1.65 {ECO:0000256|HAMAP-Rule:MF_00663, ECO:0000256|SAAS:SAAS00093350};; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
psd; phosphatidylserine decarboxylase proenzyme Psd (EC:4.1.1.65)
Phosphatidylserine decarboxylase proenzyme n=1 Tax=Clostridium sp. 7_2_43FAA RepID=U6Q377_9CLOT
L3_072_123G1_scaffold_486_9
Clostridium paraputrificum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11640..13388
DNA (1749bp) protein (583aa)
iron hydrogenase 1 (EC:1.12.7.2)
Hydrogenase n=1 Tax=Clostridium paraputrificum RepID=Q6F4C7_9CLOT
Hydrogenase {ECO:0000313|EMBL:BAD29951.1}; TaxID=29363 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium paraputrificum.;"
L3_072_123G1_scaffold_486_10
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13448..13651
DNA (204bp) protein (68aa)
Heavy metal-associated domain protein n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QKB1_9CLOT
heavy-metal-associated domain protein
Heavy-metal-associated domain protein {ECO:0000313|EMBL:AIY83644.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_072_123G1_scaffold_486_11
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13838..15433)
DNA (1596bp) protein (532aa)
Heme ABC transporter ATP-binding protein n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8FUL3_CLOPA
ABC transporter related {ECO:0000313|EMBL:AJG96716.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
ABC transporter related protein
L3_072_123G1_scaffold_486_12
Clostridium sp. NCR, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15626..16096
DNA (471bp) protein (157aa)
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase {ECO:0000256|PIRNR:PIRNR006181}; EC=4.2.-.- {ECO:0000256|PIRNR:PIRNR006181};; TaxID=1538552 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. NCR.;"
hypothetical protein n=1 Tax=[Clostridium] glycolicum RepID=UPI000361B108
aminoacyl-tRNA editing domain protein
L3_072_123G1_scaffold_486_13
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16193..16840)
DNA (648bp) protein (216aa)
Hemolysin-3 n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UVA8_CLOBO
Hemolysin-3 {ECO:0000313|EMBL:EES48376.1}; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. 'BoNT E Beluga'.;"
hemolysin-3
L3_072_123G1_scaffold_486_14
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17055..17639
DNA (585bp) protein (195aa)
Putative uncharacterized protein n=2 Tax=Clostridium botulinum E RepID=B2UX72_CLOBA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EES49926.1}; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. 'BoNT E Beluga'.;"
L3_072_123G1_scaffold_486_15
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17640..19340
DNA (1701bp) protein (567aa)
isopentenyl-diphosphate delta-isomerase n=1 Tax=Clostridium botulinum RepID=UPI00031A321A
Isopentenyl-diphosphate delta-isomerase {ECO:0000313|EMBL:KIL08381.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
isopentenyl-diphosphate delta-isomerase
L3_072_123G1_scaffold_486_16
unknown

Not on your lists

19359..19844
DNA (486bp) protein (162aa)

This feature has no annotations

L3_072_123G1_scaffold_486_17
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19877..21220)
DNA (1344bp) protein (448aa)
Membrane protein n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UVA3_CLOBO
Membrane protein {ECO:0000313|EMBL:EES48456.1}; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. 'BoNT E Beluga'.;"
membrane protein
L3_072_123G1_scaffold_486_18
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21422..22303
DNA (882bp) protein (294aa)
Hydrolase, Cof family n=2 Tax=Clostridium botulinum E RepID=B2UYQ1_CLOBA
hydrolase, Cof family
Hydrolase, Cof family {ECO:0000313|EMBL:EES50988.1}; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. 'BoNT E Beluga'.;"
L3_072_123G1_scaffold_486_19
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22413..23255
DNA (843bp) protein (281aa)
Uncharacterized protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MNV9_CLOSA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGX42208.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_072_123G1_scaffold_486_20
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23391..24803
DNA (1413bp) protein (471aa)
6-phospho-beta-glucosidase n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8FRP3_CLOPA
6-phospho-beta-glucosidase {ECO:0000313|EMBL:KJU71588.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
glycoside hydrolase family protein
L3_072_123G1_scaffold_486_21
unknown

Not on your lists

comp(25359..25454)
DNA (96bp) protein (32aa)

This feature has no annotations

L3_072_123G1_scaffold_486_22
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25525..26469
DNA (945bp) protein (315aa)
Uncharacterized protein n=1 Tax=Clostridium chauvoei JF4335 RepID=S6EU14_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY84586.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
Displaying 22 items

View Taxonomy