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L3_072_123G1_scaffold_494

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_123G1_scaffold_494_1
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2..1435)
DNA (1434bp) protein (478aa)
DHH family protein n=2 Tax=Clostridium botulinum E RepID=B2V1T3_CLOBA
DHH family protein {ECO:0000313|EMBL:AIY81665.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
DHH family protein
L3_072_123G1_scaffold_494_2
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1451..1783)
DNA (333bp) protein (111aa)
Putative uncharacterized protein n=2 Tax=Clostridium botulinum E RepID=B2V1T4_CLOBA
hypothetical protein
MazG-like family protein {ECO:0000313|EMBL:KIL08333.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
L3_072_123G1_scaffold_494_3
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1963..2208)
DNA (246bp) protein (82aa)
30S ribosomal protein S18 n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QPJ5_9CLOT
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
rpsR; ribosomal protein S18
L3_072_123G1_scaffold_494_4
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2235..2693)
DNA (459bp) protein (153aa)
Single-stranded DNA-binding protein n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FQ57_9CLOT
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|PIRNR:PIRNR002070}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
ssb; single-stranded DNA-binding family protein
L3_072_123G1_scaffold_494_5
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2708..2995)
DNA (288bp) protein (96aa)
30S ribosomal protein S6 n=4 Tax=Clostridium butyricum RepID=B1QSP7_CLOBU
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
rpsF; 30S ribosomal protein S6
L3_072_123G1_scaffold_494_6
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3094..3288)
DNA (195bp) protein (65aa)
UPI0003D679CE related cluster n=1 Tax=unknown RepID=UPI0003D679CE
Uncharacterized protein {ECO:0000313|EMBL:ETI91985.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
hypothetical protein
L3_072_123G1_scaffold_494_7
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3288..4175)
DNA (888bp) protein (296aa)
Mechanosensitive ion channel family protein n=1 Tax=Clostridium botulinum (strain Alaska E43 / Type E3) RepID=B2V1T9_CLOBA
mechanosensitive ion channel family protein
Mechanosensitive ion channel protein {ECO:0000313|EMBL:KIL08338.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
L3_072_123G1_scaffold_494_8
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4187..4426)
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1M1P5_9CLOT
hypothetical protein DUF3343
Uncharacterized protein {ECO:0000313|EMBL:AGF59545.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
L3_072_123G1_scaffold_494_9
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4577..5722
DNA (1146bp) protein (382aa)
Cysteine desulfurase family protein n=1 Tax=Clostridium botulinum (strain Alaska E43 / Type E3) RepID=B2V1U2_CLOBA
cysteine desulfurase
Cysteine desulfurase {ECO:0000313|EMBL:KIL08341.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
L3_072_123G1_scaffold_494_10
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5777..6367
DNA (591bp) protein (197aa)
Putative sporulation protein YyaC n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MXG5_CLOSA
yyaC3; putative sporulation protein YyaC
Putative sporulation protein YyaC {ECO:0000313|EMBL:AGX45464.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_072_123G1_scaffold_494_11
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6395..6910)
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MY11_CLOSA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGX45465.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_072_123G1_scaffold_494_12
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6950..7792)
DNA (843bp) protein (281aa)
ParB-like partition protein n=1 Tax=Clostridium butyricum 60E.3 RepID=N9YRR6_CLOBU
spo0J; stage 0 sporulation protein J
Stage 0 sporulation protein J {ECO:0000313|EMBL:AIY83400.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_072_123G1_scaffold_494_13
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7806..8570)
DNA (765bp) protein (255aa)
Putative ATPase involved in chromosome partitioning n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FQ66_9CLOT
Putative ATPase involved in chromosome partitioning {ECO:0000313|EMBL:CDG02934.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
soj; sporulation initiation inhibitor protein Soj
L3_072_123G1_scaffold_494_14
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8703..9482)
DNA (780bp) protein (260aa)
Putative ParB-like partition protein n=1 Tax=Clostridium chauvoei JF4335 RepID=S6EUM8_9CLOT
noc; nucleoid occlusion protein
Nucleoid occlusion protein {ECO:0000313|EMBL:AIY82577.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_072_123G1_scaffold_494_15
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9616..10335)
DNA (720bp) protein (240aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00277524};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.;"
rsmG; ribosomal RNA small subunit methyltransferase G (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase G n=1 Tax=Clostridium colicanis 209318 RepID=N9XKJ4_9CLOT
L3_072_123G1_scaffold_494_16
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10351..12234)
DNA (1884bp) protein (628aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=1 Tax=Clostridium sp. DL-VIII RepID=G7MBK5_9CLOT
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000256|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000256|HAMAP-Rule:MF_00129}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
mnmG; tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
L3_072_123G1_scaffold_494_17
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12247..13626)
DNA (1380bp) protein (460aa)
tRNA modification GTPase MnmE {ECO:0000256|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000256|HAMAP-Rule:MF_00379};; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
tRNA modification GTPase mnmE n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H4T9_9CLOT
trmE; tRNA modification GTPase TrmE
L3_072_123G1_scaffold_494_18
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13938..14567)
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H5A0_9CLOT
putative RNA-binding protein
DNA-binding protein {ECO:0000313|EMBL:KJU71789.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
L3_072_123G1_scaffold_494_19
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14599..15387)
DNA (789bp) protein (263aa)
YidC/Oxa1 family membrane protein insertase n=2 Tax=Clostridium butyricum RepID=R0ABZ1_CLOBU
Putative sporulation protein/membrane protein insertase, OxaA family {ECO:0000313|EMBL:EEP52410.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
inner membrane protein translocase component YidC
L3_072_123G1_scaffold_494_20
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15417..15626)
DNA (210bp) protein (70aa)
membrane protein insertion efficiency factor n=1 Tax=Lachnospiraceae bacterium 10-1 RepID=UPI0003B78AB1
putative membrane protein insertion efficiency factor
Putative membrane protein insertion efficiency factor {ECO:0000256|HAMAP-Rule:MF_00386, ECO:0000256|SAAS:SAAS00100919}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_072_123G1_scaffold_494_21
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15589..15975)
DNA (387bp) protein (129aa)
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rule:MF_00227};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143815};; Protein C5 {ECO:0000256|HAMAP-Rule:MF_00227}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
rnpA; ribonuclease P protein component RnpA (EC:3.1.26.5)
UPI0003D6928C related cluster n=1 Tax=unknown RepID=UPI0003D6928C
L3_072_123G1_scaffold_494_22
Clostridium sp. CAG:221, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(16036..16170)
DNA (135bp) protein (45aa)
50S ribosomal protein L34 n=1 Tax=Clostridium pasteurianum DSM 525 RepID=L7EI53_CLOPA
ribosomal protein L34
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391, ECO:0000256|SAAS:SAAS00020245}; TaxID=1262780 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:221.;"
L3_072_123G1_scaffold_494_23
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16704..18059
DNA (1356bp) protein (452aa)
Chromosomal replication initiator protein DnaA n=1 Tax=Clostridium sp. DL-VIII RepID=G7MBL2_9CLOT
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377, ECO:0000256|SAAS:SAAS00009621}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
dnaA; chromosomal replication initiator protein DnaA
L3_072_123G1_scaffold_494_24
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18318..19418
DNA (1101bp) protein (367aa)
dnaN; DNA polymerase III, beta subunit (EC:2.7.7.7)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
DNA polymerase III subunit beta n=1 Tax=Clostridium colicanis 209318 RepID=N9XW95_9CLOT
L3_072_123G1_scaffold_494_25
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19449..19661
DNA (213bp) protein (71aa)
S4 domain protein YaaA n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UW13_CLOBO
S4 domain protein YaaA {ECO:0000313|EMBL:EES50591.1}; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. 'BoNT E Beluga'.;"
yaaA; S4 domain-containing protein YaaA
L3_072_123G1_scaffold_494_26
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19720..20820
DNA (1101bp) protein (367aa)
DNA replication and repair protein recF n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H926_9CLOT
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
recF; DNA replication and repair RecF family protein
L3_072_123G1_scaffold_494_27
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20835..21095
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9WB14_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ00176.1}; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.;"
hypothetical protein
L3_072_123G1_scaffold_494_28
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21149..23056
DNA (1908bp) protein (636aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
gyrB; DNA gyrase, B subunit (EC:5.99.1.3)
DNA gyrase subunit B n=1 Tax=Clostridium colicanis 209318 RepID=N9WBE3_9CLOT
L3_072_123G1_scaffold_494_29
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


23078..25603
DNA (2526bp) protein (842aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
DNA gyrase subunit A n=1 Tax=Clostridium chauvoei JF4335 RepID=S6EUP4_9CLOT
DNA gyrase subunit A
Displaying 29 items

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