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L3_072_243G1_scaffold_137

Search features with annotation key words

Displaying items 1-30 of 65 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_243G1_scaffold_137_1
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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493..912
DNA (420bp) protein (140aa)
Retron-type reverse transcriptase n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6UA88_9CLOT
Retron-type reverse transcriptase {ECO:0000313|EMBL:EKQ54884.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
retron-type reverse transcriptase
L3_072_243G1_scaffold_137_2
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(867..1010)
DNA (144bp) protein (48aa)
UPI0003D5D52F related cluster n=1 Tax=unknown RepID=UPI0003D5D52F
Uncharacterized protein {ECO:0000313|EMBL:ETI92104.1}; Flags: Fragment;; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
L3_072_243G1_scaffold_137_3
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1679..2008
DNA (330bp) protein (110aa)
Transcriptional regulator n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1N3V7_9CLOT
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AGF58142.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
L3_072_243G1_scaffold_137_4
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1969..2559
DNA (591bp) protein (197aa)
Transcriptional regulator n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1N3V7_9CLOT
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AGF58142.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
L3_072_243G1_scaffold_137_5
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2632..3018
DNA (387bp) protein (129aa)
NADH-flavin oxidoreductase, Old yellow enzyme family n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MPJ5_9CLOT
NADH-flavin oxidoreductase, Old yellow enzyme family
NADH-flavin oxidoreductase, Old yellow enzyme family {ECO:0000313|EMBL:AGF58143.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
L3_072_243G1_scaffold_137_6
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3437..4873)
DNA (1437bp) protein (479aa)
Sugar (And other) transporter family protein n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4W9J0_CLOBI
Sugar (And other) transporter family protein {ECO:0000313|EMBL:EQK49542.1}; TaxID=1233170 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 19299.;"
MFS family transporter protein
L3_072_243G1_scaffold_137_7
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5210..6361
DNA (1152bp) protein (384aa)
sugar ABC transporter ATP-binding protein n=1 Tax=Clostridium beijerinckii RepID=UPI00030C8AD7
ATPase component of ABC-type sugar transporter {ECO:0000313|EMBL:AJG99311.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
carbohydrate ABC transporter ATP-binding protein, CUT1 family (TC 3.A.1.1.-)
L3_072_243G1_scaffold_137_8
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6354..7217
DNA (864bp) protein (288aa)
glycerol-3-phosphate ABC transporter permease n=1 Tax=Clostridium beijerinckii RepID=UPI0002F50704
Permease component of ABC-type sugar transporter {ECO:0000313|EMBL:AJG99312.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-)
L3_072_243G1_scaffold_137_9
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7217..8116
DNA (900bp) protein (300aa)
ABC transporter permease n=1 Tax=Clostridium beijerinckii RepID=UPI0002EDC5AC
Sugar permease {ECO:0000313|EMBL:AJG99313.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-)
L3_072_243G1_scaffold_137_10
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8257..9609
DNA (1353bp) protein (451aa)
ABC transporter substrate-binding protein n=1 Tax=Clostridium beijerinckii RepID=UPI0003140CAD
ABC-type sugar transport system, periplasmic component {ECO:0000313|EMBL:AJG99314.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-)
L3_072_243G1_scaffold_137_11
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9719..10447
DNA (729bp) protein (243aa)
hypothetical protein n=1 Tax=Clostridium beijerinckii RepID=UPI0002DA9C09
Glycerophosphoryl diester phosphodiesterase family protein {ECO:0000313|EMBL:AJG99315.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
glycerophosphoryl diester phosphodiesterase
L3_072_243G1_scaffold_137_12
BJP_08E140C01_Spirochaeta_53_29, Spirochaeta, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(10744..11430)
DNA (687bp) protein (229aa)
Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Sphaerochaeta globosa (strain ATCC BAA-1886 / DSM 22777 / Buddy) RepID=F0RUV8_SPHGB
periplasmic binding protein/LacI transcriptional regulator
Tax=BJP_08E140C01_Spirochaeta_53_29
L3_072_243G1_scaffold_137_13
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12140..12550
DNA (411bp) protein (137aa)
Peptide deformylase n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NQA5_9FIRM
Peptide deformylase {ECO:0000256|RuleBase:RU003335, ECO:0000256|SAAS:SAAS00013131}; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
N-formylmethionyl-tRNA deformylase
L3_072_243G1_scaffold_137_14
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12739..13056
DNA (318bp) protein (106aa)
MazG nucleotide pyrophosphohydrolase n=1 Tax=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) RepID=A6LX62_CLOB8
MazG nucleotide pyrophosphohydrolase
MazG nucleotide pyrophosphohydrolase {ECO:0000313|EMBL:ABR34942.1}; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium; acetobutylicum).;"
L3_072_243G1_scaffold_137_15
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13254..14996
DNA (1743bp) protein (581aa)
Methyl-accepting chemotaxis protein n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6UBY1_9CLOT
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:EKQ57849.1}; Flags: Precursor;; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
methyl-accepting chemotaxis sensory transducer
L3_072_243G1_scaffold_137_16
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15545..16933
DNA (1389bp) protein (463aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AE78_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ31094.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
Cell division protein FtsI/penicillin-binding protein 2
L3_072_243G1_scaffold_137_17
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16973..17647
DNA (675bp) protein (225aa)
peptidoglycan glycosyltransferase (EC:2.4.1.129)
Penicillin-binding protein, transpeptidase domain protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0BYG4_9CLOT
Penicillin-binding protein, transpeptidase domain protein {ECO:0000313|EMBL:EEG74892.1}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
L3_072_243G1_scaffold_137_18
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17790..19193
DNA (1404bp) protein (468aa)
ytjP; putative dipeptidase YtjP (EC:3.4.13.-)
Dipeptidase n=1 Tax=Clostridium butyricum DKU-01 RepID=M8K6T3_CLOBU
Peptidase M20 {ECO:0000313|EMBL:KHD17068.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
L3_072_243G1_scaffold_137_19
unknown

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comp(19162..19398)
DNA (237bp) protein (79aa)

This feature has no annotations

L3_072_243G1_scaffold_137_20
[Clostridium] cellulolyticum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19607..21103)
DNA (1497bp) protein (499aa)
Two component transcriptional regulator, AraC family n=1 Tax=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) RepID=B8I3I7_CLOCE
AraC family transcriptional regulator
Two component transcriptional regulator, AraC family {ECO:0000313|EMBL:ACL76330.1}; TaxID=394503 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 /; H10).;"
L3_072_243G1_scaffold_137_21
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21084..22835)
DNA (1752bp) protein (584aa)
Integral membrane sensor signal transduction histidine kinase {ECO:0000313|EMBL:EMS71645.1}; EC=2.7.13.3 {ECO:0000313|EMBL:EMS71645.1};; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Clostridium termitidis CT1112 RepID=S0FI93_9CLOT
sensor with HAMP domain
L3_072_243G1_scaffold_137_22
Paenibacillus sp. MSt1, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

22956..24263
DNA (1308bp) protein (436aa)
family 1 extracellular solute-binding protein n=1 Tax=Paenibacillus elgii RepID=UPI000248E0E2
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KEQ24608.1}; TaxID=1501230 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. MSt1.;"
extracellular solute-binding protein
L3_072_243G1_scaffold_137_23
Paenibacillus sp. MSt1, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

24344..25312
DNA (969bp) protein (323aa)
binding-protein-dependent transport system inner membrane component n=1 Tax=Paenibacillus elgii RepID=UPI000248E0E3
ABC transporter permease {ECO:0000313|EMBL:KEQ24607.1}; TaxID=1501230 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. MSt1.;"
ABC transporter
L3_072_243G1_scaffold_137_24
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25324..26160
DNA (837bp) protein (279aa)
ABC-type sugar transport system, permease component n=1 Tax=Clostridium termitidis CT1112 RepID=S0FIT5_9CLOT
ABC-type sugar transport system, permease component {ECO:0000313|EMBL:EMS71612.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
ABC transporter permease
L3_072_243G1_scaffold_137_25
Mahella australiensis, Mahella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

26195..28198
DNA (2004bp) protein (668aa)
Beta-galactosidase trimerisation domain protein n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F3ZVQ2_MAHA5
beta-galactosidase trimerisation domain-containing protein
Beta-galactosidase trimerisation domain protein {ECO:0000313|EMBL:AEE97446.1}; TaxID=697281 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family IV. Incertae Sedis; Mahella.;" source="Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON).;"
L3_072_243G1_scaffold_137_26
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28215..29093
DNA (879bp) protein (293aa)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9WCQ7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ00660.1}; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.;"
NagC/XylR family transcriptional regulator
L3_072_243G1_scaffold_137_27
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29162..29404
DNA (243bp) protein (81aa)
UPI0003D5CE06 related cluster n=1 Tax=unknown RepID=UPI0003D5CE06
Cytosine deaminase {ECO:0000313|EMBL:ETI88087.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
putative cytosine deaminase
L3_072_243G1_scaffold_137_28
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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29618..30940
DNA (1323bp) protein (441aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=N9Z9E7_CLOBU
Putative integral membrane transport protein {ECO:0000313|EMBL:CDH90878.1}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
xanthine/uracil permease family protein
L3_072_243G1_scaffold_137_29
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31495..33402
DNA (1908bp) protein (636aa)
Acyl-coA dehydrogenase n=1 Tax=Clostridium botulinum (strain Alaska E43 / Type E3) RepID=B2V550_CLOBA
acyl-coA dehydrogenase
Rubredoxin family protein {ECO:0000313|EMBL:AIY80760.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
L3_072_243G1_scaffold_137_30
Clostridium sulfidigenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33454..34653
DNA (1200bp) protein (400aa)
beta-lactamase n=1 Tax=Clostridium botulinum RepID=UPI0002D835BA
Beta-lactamase {ECO:0000313|EMBL:KEZ86854.1}; TaxID=318464 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sulfidigenes.;"
fprA; flavodoxin
Displaying items 1-30 of 65 in total

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