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L3_072_243G1_scaffold_165

Search features with annotation key words

Displaying items 1-30 of 103 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_243G1_scaffold_165_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2..325
DNA (324bp) protein (108aa)
Putative uncharacterized protein ficl n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EMX3_BIFBS
ficl; Fic family protein
Uncharacterized protein {ECO:0000313|EMBL:ADO53407.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_072_243G1_scaffold_165_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(648..1976)
DNA (1329bp) protein (443aa)
Putative tyrosine recombinase n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2M282_BIFBI
Putative tyrosine recombinase {ECO:0000313|EMBL:EKF16091.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
xerC; putative tyrosine recombinase
L3_072_243G1_scaffold_165_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2410..3057
DNA (648bp) protein (216aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EMX5_BIFBS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO53409.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_072_243G1_scaffold_165_4
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3273..5603)
DNA (2331bp) protein (777aa)
RelA n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6H6S9_9BIFI
RelA {ECO:0000313|EMBL:CDB21977.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
relA; GTP pyrophosphokinase
L3_072_243G1_scaffold_165_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5753..6241)
DNA (489bp) protein (163aa)
Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071038}; Short=dUTPase {ECO:0000256|HAMAP-Rule:MF_00116};; EC=3.6.1.23 {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071036};; dUTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00116}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
dut; deoxyuridine 5'-triphosphate nucleotidohydrolase (EC:3.6.1.23)
Deoxyuridine 5'-triphosphate nucleotidohydrolase n=2 Tax=Bifidobacterium bifidum RepID=E4VAL3_BIFBI
L3_072_243G1_scaffold_165_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6229..6522)
DNA (294bp) protein (98aa)
Uncharacterized protein n=8 Tax=Bifidobacterium RepID=I3WIV9_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO53412.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_072_243G1_scaffold_165_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6672..7727
DNA (1056bp) protein (352aa)
Uncharacterized protein n=4 Tax=Bifidobacterium bifidum RepID=E4VAL5_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFI43271.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_072_243G1_scaffold_165_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7844..9076)
DNA (1233bp) protein (411aa)
Type I phosphodiesterase / nucleotide pyrophosphatase n=2 Tax=Bifidobacterium bifidum RepID=U2CHR8_BIFBI
Type I phosphodiesterase / nucleotide pyrophosphatase {ECO:0000313|EMBL:EFR50658.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
type I phosphodiesterase/nucleotide pyrophosphatase
L3_072_243G1_scaffold_165_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9225..11897
DNA (2673bp) protein (891aa)
DNA topoisomerase (ATP-hydrolyzing) {ECO:0000256|SAAS:SAAS00075954}; EC=5.99.1.3 {ECO:0000256|SAAS:SAAS00075954};; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
gyrA; DNA gyrase subunit A (EC:5.99.1.3)
GyrA DNA gyrase subunit A n=6 Tax=Bifidobacterium bifidum RepID=E4NXN2_BIFBP
L3_072_243G1_scaffold_165_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12128..16774)
DNA (4647bp) protein (1549aa)
DEAD/DEAH box helicase n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CGB2_BIFBI
Lhr ATP-dependent helicase {ECO:0000313|EMBL:KFI43274.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
ATP-dependent helicase II
L3_072_243G1_scaffold_165_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16832..17074)
DNA (243bp) protein (81aa)
Transcriptional regulator n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NXN4_BIFBP
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:EKF15169.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_072_243G1_scaffold_165_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17697..19136
DNA (1440bp) protein (480aa)
Aspartate ammonia-lyase {ECO:0000313|EMBL:EFR50663.1}; EC=4.3.1.1 {ECO:0000313|EMBL:EFR50663.1};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
Aspartate ammonia-lyase n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4VAR3_BIFBI
ansB; aspartate ammonia-lyase
L3_072_243G1_scaffold_165_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19217..21529)
DNA (2313bp) protein (771aa)
DNA gyrase subunit B {ECO:0000313|EMBL:AFL04830.1}; EC=5.99.1.3 {ECO:0000313|EMBL:AFL04830.1};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
gyrB; DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WIW7_BIFBI
L3_072_243G1_scaffold_165_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21661..23187)
DNA (1527bp) protein (509aa)
RNA polymerase sigma factor SigA n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CGB9_BIFBI
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
RNA polymerase principal sigma factor HrdB
L3_072_243G1_scaffold_165_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23338..24087)
DNA (750bp) protein (250aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NXN8_BIFBP
Uncharacterized protein {ECO:0000313|EMBL:BAQ98455.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L3_072_243G1_scaffold_165_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24207..25304
DNA (1098bp) protein (366aa)
idsA; bifunctional short chain isoprenyl diphosphate synthase (EC:2.5.1.10)
Bifunctional short chain isoprenyl diphosphatesynthase {ECO:0000313|EMBL:AFL04833.1}; EC=2.5.1.10 {ECO:0000313|EMBL:AFL04833.1};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Bifunctional short chain isoprenyl diphosphatesynthase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WIX0_BIFBI
L3_072_243G1_scaffold_165_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25369..27492
DNA (2124bp) protein (708aa)
pknA; serine/threonine protein kinase (EC:2.7.11.1)
PknA Serine/threonine protein kinase n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NXP0_BIFBP
Kinase domain protein {ECO:0000313|EMBL:EFR50668.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L3_072_243G1_scaffold_165_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27590..28306)
DNA (717bp) protein (239aa)
plsC; 1-acyl-sn-glycerol-3-phosphate acyl transferase (EC:2.3.1.51)
1-acyl-sn-glycerol-3-phosphate acyltransferase n=3 Tax=Bifidobacterium RepID=E3EMZ1_BIFBS
1-acyl-sn-glycerol-3-phosphate acyltransferase {ECO:0000313|EMBL:ADO53425.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_072_243G1_scaffold_165_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28355..28954
DNA (600bp) protein (200aa)
Uncharacterized protein n=4 Tax=Bifidobacterium bifidum RepID=E4VAS0_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ERI83600.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_072_243G1_scaffold_165_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28993..30039)
DNA (1047bp) protein (349aa)
Anthranilate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083107}; EC=2.4.2.18 {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083113};; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
trpD; anthranilate phosphoribosyltransferase (EC:2.4.2.18)
Anthranilate phosphoribosyltransferase n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2M1P1_BIFBI
L3_072_243G1_scaffold_165_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30730..33684)
DNA (2955bp) protein (985aa)
Protein translocase subunit SecA n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4VAS2_BIFBI
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
secA; protein translocase subunit secA
L3_072_243G1_scaffold_165_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33824..34489)
DNA (666bp) protein (222aa)
Ribosome-associated factor Y n=8 Tax=Bifidobacterium RepID=E3EMZ5_BIFBS
ribosome-associated factor Y
Ribosome-associated factor Y {ECO:0000313|EMBL:EKF15874.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_072_243G1_scaffold_165_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

34650..34874
DNA (225bp) protein (75aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=K2HV73_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI83604.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L3_072_243G1_scaffold_165_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(34761..35399)
DNA (639bp) protein (213aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EMZ6_BIFBS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO53430.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_072_243G1_scaffold_165_25
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(35846..36271)
DNA (426bp) protein (142aa)
RecX-like protein n=4 Tax=Bifidobacterium RepID=E3EMZ7_BIFBS
recX; RecX-like protein
RecX-like protein {ECO:0000313|EMBL:CDB24342.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_072_243G1_scaffold_165_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(36463..37653)
DNA (1191bp) protein (397aa)
Protein RecA n=6 Tax=Bifidobacterium RepID=E3EMZ8_BIFBS
recA; recombinase A
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_072_243G1_scaffold_165_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(37923..38156)
DNA (234bp) protein (78aa)
Uncharacterized protein n=6 Tax=Bifidobacterium bifidum RepID=I3WIY0_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ERI83608.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_072_243G1_scaffold_165_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(38328..38840)
DNA (513bp) protein (171aa)
Transcriptional regulator n=4 Tax=Bifidobacterium bifidum RepID=E3EN00_BIFBS
Transcriptional regulator {ECO:0000313|EMBL:EKF15869.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
transcriptional regulator
L3_072_243G1_scaffold_165_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(38901..39446)
DNA (546bp) protein (182aa)
Competence-damage protein cinA n=5 Tax=Bifidobacterium RepID=E3EN01_BIFBS
cinA; putative nucleotide-utilizing enzyme
Competence-damage protein cinA {ECO:0000313|EMBL:ADO53435.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_072_243G1_scaffold_165_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(39518..40189)
DNA (672bp) protein (224aa)
pgsA; CDP-diacylglycerol--glycerol-3-phosphate3-phosphatidyl transferase (EC:2.7.8.5)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:EFR50681.1}; EC=2.7.8.5 {ECO:0000313|EMBL:EFR50681.1};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
CDP-diacylglycerol--glycerol-3-phosphate3-phosphatidyl transferase n=4 Tax=Bifidobacterium RepID=I3WIY3_BIFBI
Displaying items 1-30 of 103 in total

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