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L3_072_243G1_scaffold_352

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_243G1_scaffold_352_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2..82)
DNA (81bp) protein (27aa)
Small GTP-binding domain protein (Fragment) n=1 Tax=Clostridium difficile DA00256 RepID=T3ZC90_CLODI
elongation factor Tu
Elongation factor Tu {ECO:0000255|HAMAP-Rule:MF_00118}; Short=EF-Tu {ECO:0000255|HAMAP-Rule:MF_00118};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_072_243G1_scaffold_352_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(156..803)
DNA (648bp) protein (216aa)
RNA polymerase factor sigma-70 {ECO:0000313|EMBL:CCL32577.1}; EC=2.7.7.6 {ECO:0000313|EMBL:CCL32577.1};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
RNA polymerase sigma-H factor n=219 Tax=Clostridium difficile RepID=C9XIH3_CLODC
sigH; RNA polymerase factor sigma-70
L3_072_243G1_scaffold_352_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(868..1395)
DNA (528bp) protein (176aa)
Uncharacterized protein n=157 Tax=Clostridium difficile RepID=C9XIH2_CLODC
hypothetical protein
YacP-like NYN domain protein {ECO:0000313|EMBL:EQG78957.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_072_243G1_scaffold_352_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1398..2135)
DNA (738bp) protein (246aa)
RNA 2'-O ribose methyltransferase substrate binding family protein n=175 Tax=Clostridium difficile RepID=T3IQG8_CLODC
tRNA/rRNA methyltransferase
RNA 2'-O ribose methyltransferase substrate binding family protein {ECO:0000313|EMBL:EQE70936.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_072_243G1_scaffold_352_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2148..2906)
DNA (759bp) protein (253aa)
thyX; FAD-dependent thymidylate synthase (EC:2.1.1.148)
Thymidylate synthase ThyX {ECO:0000256|HAMAP-Rule:MF_01408}; Short=TS {ECO:0000256|HAMAP-Rule:MF_01408};; Short=TSase {ECO:0000256|HAMAP-Rule:MF_01408};; EC=2.1.1.148 {ECO:0000256|HAMAP-Rule:MF_01408};; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
Thymidylate synthase ThyX n=2 Tax=Clostridium difficile RepID=T4Q3A7_CLODI
L3_072_243G1_scaffold_352_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3012..3407)
DNA (396bp) protein (132aa)
Mini-ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_01468}; Short=Mini-3 {ECO:0000256|HAMAP-Rule:MF_01468};; Short=Mini-RNase 3 {ECO:0000256|HAMAP-Rule:MF_01468};; EC=3.1.26.- {ECO:0000256|HAMAP-Rule:MF_01468};; Mini-RNase III {ECO:0000256|HAMAP-Rule:MF_01468}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
Mini-ribonuclease 3 n=146 Tax=Clostridium difficile RepID=T3IJ58_CLODC
hypothetical protein
L3_072_243G1_scaffold_352_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3410..4807)
DNA (1398bp) protein (466aa)
cysS; Cysteinyl-tRNA synthetase (Cysteine--tRNAligase) (CysRS) (EC:6.1.1.16)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Cysteine--tRNA ligase n=142 Tax=Clostridium difficile RepID=SYC_CLOD6
L3_072_243G1_scaffold_352_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4952..5107)
DNA (156bp) protein (52aa)
Uncharacterized protein n=218 Tax=Clostridium difficile RepID=T3IM22_CLODC
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQG78974.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_072_243G1_scaffold_352_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5328..6809)
DNA (1482bp) protein (494aa)
gltX; Glutamyl-tRNA synthetase (EC:6.1.1.17)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Glutamate--tRNA ligase n=194 Tax=Clostridium difficile RepID=SYE_CLOD6
L3_072_243G1_scaffold_352_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7316..8290
DNA (975bp) protein (325aa)
Helix-turn-helix domain protein n=2 Tax=Clostridium difficile RepID=T4Q3A2_CLODI
Helix-turn-helix domain protein {ECO:0000313|EMBL:EQJ63173.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
putative conjugative transposon proteinTn1549-like, CTn4-Orf1
L3_072_243G1_scaffold_352_11
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8312..8533
DNA (222bp) protein (74aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=B6FLH9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA83104.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L3_072_243G1_scaffold_352_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8627..9109
DNA (483bp) protein (161aa)
Uncharacterized protein n=2 Tax=Clostridium difficile RepID=T4PXG6_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQJ63171.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
putative conjugative transposon proteinTn1549-like, CTn4-Orf3
L3_072_243G1_scaffold_352_13
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9106..10896
DNA (1791bp) protein (597aa)
Type IV secretory system Conjugative DNA transfer family protein n=2 Tax=Clostridium difficile RepID=T4Q3E6_CLODI
TraG/TraD family protein {ECO:0000313|EMBL:EEU96892.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
Type IV secretory pathway, VirD4 components
L3_072_243G1_scaffold_352_14
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10889..11059
DNA (171bp) protein (57aa)
Uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H5B0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU96891.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
hypothetical protein
L3_072_243G1_scaffold_352_15
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11245..11460
DNA (216bp) protein (72aa)
Maff2 family protein n=4 Tax=Clostridiales RepID=T4P0A1_CLODI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL26627.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L3_072_243G1_scaffold_352_16
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11479..12348
DNA (870bp) protein (290aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus torques L2-14 RepID=D4M5W4_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL26626.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L3_072_243G1_scaffold_352_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12391..12795
DNA (405bp) protein (135aa)
PrgI family protein n=2 Tax=Clostridium difficile RepID=T4Q395_CLODI
conjugative transposon protein
Putative conjugative transposon protein Tn1549-like, CTn4-Orf8 {ECO:0000313|EMBL:CAJ67961.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_072_243G1_scaffold_352_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12743..14929
DNA (2187bp) protein (729aa)
conjugal transfer protein TraE n=1 Tax=Clostridium difficile RepID=UPI0003659FA8
AAA-like domain protein {ECO:0000313|EMBL:EQJ63166.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
putative hydrolase Tn1549-like, CTn4-Orf9
L3_072_243G1_scaffold_352_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15525..17468
DNA (1944bp) protein (648aa)
Uncharacterized protein n=2 Tax=Clostridium difficile RepID=T4Q3E1_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQJ63165.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
hypothetical protein
L3_072_243G1_scaffold_352_20
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17501..17773
DNA (273bp) protein (91aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=C7H722_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EEU96272.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
L3_072_243G1_scaffold_352_21
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17763..18491
DNA (729bp) protein (243aa)
Uncharacterized protein n=2 Tax=Clostridium difficile RepID=T4Q4F3_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EEU96273.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
putative cell surface proteinTn1549-like,CTn4-Orf13
L3_072_243G1_scaffold_352_22
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

18488..18676
DNA (189bp) protein (63aa)
Uncharacterized protein n=3 Tax=Firmicutes RepID=A7VXX5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY84343.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
putative conjugative transposon proteinTn1549-like, CTn4-Orf14
L3_072_243G1_scaffold_352_23
Erysipelotrichaceae bacterium 2_2_44A, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

18693..20783
DNA (2091bp) protein (697aa)
DNA topoisomerase {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608}; EC=5.99.1.2 {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608};; TaxID=457422 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 2_2_44A.;"
topB; DNA topoisomerase III; Tn1549-like, CTn4-Orf15 (EC:5.99.1.2)
DNA topoisomerase n=2 Tax=Clostridium difficile RepID=T4Q3F8_CLODI
L3_072_243G1_scaffold_352_24
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21002..24508
DNA (3507bp) protein (1169aa)
Uncharacterized protein n=1 Tax=Clostridium difficile P42 RepID=T4Q390_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CBL26620.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
Domain of unknown function (DUF955)./Antirestriction protein (ArdA).
L3_072_243G1_scaffold_352_25
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24511..24717
DNA (207bp) protein (69aa)
Uncharacterized protein n=3 Tax=root RepID=C7H731_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EEU96281.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
L3_072_243G1_scaffold_352_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24714..25079
DNA (366bp) protein (122aa)
Cysteine-rich VLP family protein n=1 Tax=Clostridium difficile P28 RepID=T4P093_CLODI
Cysteine-rich VLP family protein {ECO:0000313|EMBL:EQJ63158.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
conjugative transposon protein
L3_072_243G1_scaffold_352_27
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25224..25613)
DNA (390bp) protein (130aa)
Uncharacterized protein n=2 Tax=Clostridium difficile RepID=T3NBT9_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EEU96283.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
hypothetical protein
L3_072_243G1_scaffold_352_28
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25564..25833)
DNA (270bp) protein (90aa)
Helix-turn-helix domain protein n=5 Tax=Clostridium difficile RepID=T3NHR6_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EEU96284.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
hypothetical protein
L3_072_243G1_scaffold_352_29
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25894..27243)
DNA (1350bp) protein (450aa)
Relaxase/mobilization nuclease domain protein n=2 Tax=Clostridium difficile RepID=T4Q3D6_CLODI
Relaxase/Mobilisation nuclease domain.
Relaxase/Mobilisation nuclease domain {ECO:0000313|EMBL:CBL26616.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L3_072_243G1_scaffold_352_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27204..27533)
DNA (330bp) protein (110aa)
Bacterial mobilization family protein n=6 Tax=Clostridium difficile RepID=T2U1J3_CLODI
putative mobilization proteinTn1549-like,CTn4-Orf23
Bacterial mobilisation protein (MobC) {ECO:0000313|EMBL:CKG93649.1}; Putative mobilization proteinTn1549-like,CTn4-Orf23 {ECO:0000313|EMBL:CEJ97664.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Displaying items 1-30 of 35 in total

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