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L3_072_362G1_scaffold_4

Search features with annotation key words

Displaying items 1-30 of 240 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_362G1_scaffold_4_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(521..664)
DNA (144bp) protein (48aa)
Uncharacterized protein n=214 Tax=Clostridium difficile RepID=T3G9T2_CLODC
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCA62882.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_072_362G1_scaffold_4_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(730..1092)
DNA (363bp) protein (121aa)
Uncharacterized protein n=115 Tax=Clostridium difficile RepID=T3G8N3_CLODC
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:CCL31097.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_072_362G1_scaffold_4_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1150..1443)
DNA (294bp) protein (98aa)
Preprotein translocase, YajC subunit n=214 Tax=Clostridium difficile RepID=C9XPA6_CLODC
putative protein translocase subunit
Preprotein translocase, YajC subunit {ECO:0000313|EMBL:EHJ33222.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L3_072_362G1_scaffold_4_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1577..2698)
DNA (1122bp) protein (374aa)
tgt; Queuine tRNA-ribosyltransferase (tRNA-guaninetransglycosylase) (Guanine insertion enzyme) (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Queuine tRNA-ribosyltransferase n=186 Tax=Clostridium difficile RepID=T3GDW5_CLODC
L3_072_362G1_scaffold_4_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2777..3262)
DNA (486bp) protein (162aa)
Uncharacterized protein n=214 Tax=Clostridium difficile RepID=G6B4N2_CLODI
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:CCL31100.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_072_362G1_scaffold_4_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3274..4299)
DNA (1026bp) protein (342aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
queA; S-adenosylmethionine--tRNA ribosyltransferase-isomerase (EC:5.-.-.-)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=111 Tax=Clostridium difficile RepID=T2TE61_CLODI
L3_072_362G1_scaffold_4_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4617..5636)
DNA (1020bp) protein (340aa)
ruvB; Holliday junction DNA helicase RuvB (EC:3.6.1.-)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
Holliday junction ATP-dependent DNA helicase RuvB n=203 Tax=Clostridium difficile RepID=RUVB_CLOD6
L3_072_362G1_scaffold_4_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5743..6345)
DNA (603bp) protein (201aa)
ruvA; Holliday junction ATP-dependent DNA helicaseRuvA (EC:3.6.1.-)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Holliday junction ATP-dependent DNA helicase RuvA n=194 Tax=Clostridium difficile RepID=T3GDX6_CLODC
L3_072_362G1_scaffold_4_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6338..6847)
DNA (510bp) protein (170aa)
ruvC; Holliday junction resolvase (EC:3.1.22.4)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Crossover junction endodeoxyribonuclease RuvC n=84 Tax=Clostridium difficile RepID=RUVC_CLOD6
L3_072_362G1_scaffold_4_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7159..7788)
DNA (630bp) protein (210aa)
Uncharacterized protein n=167 Tax=Clostridium difficile RepID=T3GD12_CLODC
conserved hypothetical protein
Uncharacterised protein {ECO:0000313|EMBL:CKH87907.1}; Uncharacterized protein {ECO:0000313|EMBL:CDS88534.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_072_362G1_scaffold_4_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7991..8314
DNA (324bp) protein (108aa)
Uncharacterized protein n=126 Tax=Clostridium difficile RepID=C9XPB4_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCK99303.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
L3_072_362G1_scaffold_4_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8582..9436
DNA (855bp) protein (285aa)
Uncharacterized protein n=138 Tax=Clostridium difficile RepID=G6BTD6_CLODI
hypothetical protein
Predicted membrane protein {ECO:0000313|EMBL:CKH87960.1}; Putative membrane protein {ECO:0000313|EMBL:CDS89157.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_072_362G1_scaffold_4_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9622..11058)
DNA (1437bp) protein (479aa)
Uncharacterized protein n=2 Tax=Clostridium difficile RepID=T4PGJ0_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQE60191.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
conserved hypothetical protein
L3_072_362G1_scaffold_4_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11129..12511)
DNA (1383bp) protein (461aa)
H+ symporter family protein n=130 Tax=Clostridium difficile RepID=T3GBC4_CLODC
Gluconate permease {ECO:0000313|EMBL:CKH88013.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
gluconate permease
L3_072_362G1_scaffold_4_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12647..13537)
DNA (891bp) protein (297aa)
garR; Tartronate semialdehyde reductase (EC:1.1.1.60)
Tartronate semialdehyde reductase {ECO:0000313|EMBL:CAJ69701.1}; EC=1.1.1.60 {ECO:0000313|EMBL:CAJ69701.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
2-hydroxy-3-oxopropionate reductase n=4 Tax=Clostridium difficile RepID=T4PHG8_CLODI
L3_072_362G1_scaffold_4_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13948..14619
DNA (672bp) protein (224aa)
Transcriptional regulator, GntR family n=15 Tax=Clostridium difficile RepID=G6BTD2_CLODI
Transcriptional regulator, GntR family {ECO:0000313|EMBL:CCL23186.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Transcriptional regulator, GntR family
L3_072_362G1_scaffold_4_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14731..15270
DNA (540bp) protein (180aa)
L-2-amino-thiazoline-4-carboxylic acid hydrolase family protein n=171 Tax=Clostridium difficile RepID=T3G8J4_CLODC
L-2-amino-thiazoline-4-carboxylic acid hydrolase family protein {ECO:0000313|EMBL:EQE60172.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
hypothetical protein
L3_072_362G1_scaffold_4_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15532..15840
DNA (309bp) protein (103aa)
Uncharacterized protein n=202 Tax=Clostridium difficile RepID=C9XPC1_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EHJ33238.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L3_072_362G1_scaffold_4_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16003..17793)
DNA (1791bp) protein (597aa)
ABC transporter ATP-binding protein/permease {ECO:0000313|EMBL:CKH88142.1}; EC=3.6.3.- {ECO:0000313|EMBL:CKH88142.1};; ABC-type transport system, multidrug-family ATP-binding/permease protein {ECO:0000313|EMBL:CDS95358.1}; EC=3.6.3.- {ECO:0000313|EMBL:CDS95358.1};; ABC-type transport system, multidrug-familyATP-binding/permease protein {ECO:0000313|EMBL:CEJ99446.1}; EC=3.6.3.- {ECO:0000313|EMBL:CEJ99446.1};; Uncharacterized protein {ECO:0000313|EMBL:CDS89166.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
ABC transporter family protein n=198 Tax=Clostridium difficile RepID=C9XPC2_CLODC
ABC transporter ATP-binding protein/permease
L3_072_362G1_scaffold_4_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17793..19520)
DNA (1728bp) protein (576aa)
multidrug family ABC transporter ATP-binding/permease (EC:3.6.3.-)
ABC transporter family protein n=164 Tax=Clostridium difficile RepID=T3G8G8_CLODC
ABC transporter family protein {ECO:0000313|EMBL:EQE60196.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_072_362G1_scaffold_4_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19765..19932)
DNA (168bp) protein (56aa)
RibD C-terminal domain protein n=24 Tax=Clostridium difficile RepID=T2TFA8_CLODI
conserved hypothetical protein
Dihydrofolate reductase family protein {ECO:0000313|EMBL:CCK88219.1}; TaxID=1215059 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T5.;"
L3_072_362G1_scaffold_4_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20329..21441
DNA (1113bp) protein (371aa)
Putative serine dehydratase domain protein n=2 Tax=Clostridium difficile RepID=T4PAN9_CLODI
Putative amino acid racemase {ECO:0000313|EMBL:CCL23192.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
amino acid racemase
L3_072_362G1_scaffold_4_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21806..22315)
DNA (510bp) protein (170aa)
Transporter gate domain protein n=124 Tax=Clostridium difficile RepID=G6B4Q1_CLODI
hypothetical protein
Transporter gate domain protein {ECO:0000313|EMBL:EHJ33243.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L3_072_362G1_scaffold_4_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22317..22964)
DNA (648bp) protein (216aa)
Nucleoside recognition family protein n=212 Tax=Clostridium difficile RepID=C9XPC7_CLODC
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:CCL31121.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_072_362G1_scaffold_4_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22978..24150)
DNA (1173bp) protein (391aa)
putative glutamate carboxypeptidase, M20 family (EC:3.4.17.11)
Peptidase dimerization domain protein n=11 Tax=Clostridium difficile RepID=G6BF03_CLODI
Peptidase dimerization domain protein {ECO:0000313|EMBL:EHJ33245.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L3_072_362G1_scaffold_4_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24418..25794
DNA (1377bp) protein (459aa)
Uncharacterized protein n=83 Tax=Clostridium difficile RepID=T3GB80_CLODC
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ69711.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_072_362G1_scaffold_4_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26044..26379)
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=Clostridium difficile RepID=UPI000369114E
Putative membrane protein {ECO:0000313|EMBL:CCL23197.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
hypothetical protein
L3_072_362G1_scaffold_4_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26730..27260)
DNA (531bp) protein (177aa)
Flavodoxin domain protein n=11 Tax=Clostridium difficile RepID=T2TBF3_CLODI
Flavodoxin domain protein {ECO:0000313|EMBL:EQG74424.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
putative flavodoxin
L3_072_362G1_scaffold_4_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27348..28442)
DNA (1095bp) protein (365aa)
Flavin oxidoreductase / NADH oxidase family protein n=54 Tax=Clostridium difficile RepID=T2TF75_CLODI
Flavin oxidoreductase / NADH oxidase family protein {ECO:0000313|EMBL:EQE60198.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
putative oxidoreductase (fad-binding domain)
L3_072_362G1_scaffold_4_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28444..28890)
DNA (447bp) protein (149aa)
Transcriptional regulator, MarR family n=99 Tax=Clostridium difficile RepID=Q183R5_CLOD6
Transcriptional regulator, MarR family
MarR family protein {ECO:0000313|EMBL:EQE60180.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
Displaying items 1-30 of 240 in total

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