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L3_072_362G1_scaffold_55

Search features with annotation key words

Displaying items 1-30 of 106 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_362G1_scaffold_55_1
unknown

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1..84
DNA (84bp) protein (28aa)

This feature has no annotations

L3_072_362G1_scaffold_55_2
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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156..1082
DNA (927bp) protein (309aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=N9YYR4_CLOBU
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:ETI90384.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
putative methyl-accepting chemotaxis protein
L3_072_362G1_scaffold_55_3
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1408..3147
DNA (1740bp) protein (580aa)
Potassium-transporting ATPase A chain {ECO:0000256|HAMAP-Rule:MF_00275}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00275};; ATP phosphohydrolase [potassium-transporting] A chain {ECO:0000256|HAMAP-Rule:MF_00275}; Potassium-binding and translocating subunit A {ECO:0000256|HAMAP-Rule:MF_00275}; Potassium-translocating ATPase A chain {ECO:0000256|HAMAP-Rule:MF_00275}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
kdpA; potassium-transporting ATPase subunit A (EC:3.6.3.12)
Potassium-transporting ATPase A chain n=1 Tax=Clostridium butyricum 60E.3 RepID=R0A3C6_CLOBU
L3_072_362G1_scaffold_55_4
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3162..5228
DNA (2067bp) protein (689aa)
Potassium-transporting ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00285, ECO:0000256|SAAS:SAAS00017871};; ATP phosphohydrolase [potassium-transporting] B chain {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-binding and translocating subunit B {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-translocating ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
kdpB; potassium-transporting ATPase subunit B (EC:3.6.3.12)
Potassium-transporting ATPase B chain n=1 Tax=Clostridium botulinum (strain Alaska E43 / Type E3) RepID=ATKB_CLOBA
L3_072_362G1_scaffold_55_5
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5244..5849
DNA (606bp) protein (202aa)
Potassium-transporting ATPase C chain {ECO:0000256|HAMAP-Rule:MF_00276}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00276, ECO:0000256|SAAS:SAAS00173844};; ATP phosphohydrolase [potassium-transporting] C chain {ECO:0000256|HAMAP-Rule:MF_00276}; Potassium-binding and translocating subunit C {ECO:0000256|HAMAP-Rule:MF_00276}; Potassium-translocating ATPase C chain {ECO:0000256|HAMAP-Rule:MF_00276}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
kdpC; potassium-transporting ATPase subunit C (EC:3.6.3.12)
potassium transporter KtrA n=1 Tax=Clostridium botulinum RepID=UPI00036659C9
L3_072_362G1_scaffold_55_6
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5985..8687
DNA (2703bp) protein (901aa)
Osmosensitive K+ channel histidine kinase KdpD {ECO:0000313|EMBL:KJZ83312.1}; EC=2.7.3.- {ECO:0000313|EMBL:KJZ83312.1};; TaxID=1523155 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN22A.;"
sensor protein KdpD (EC:2.7.13.3)
Sensor protein KdpD n=3 Tax=Clostridium butyricum RepID=B1QXG5_CLOBU
L3_072_362G1_scaffold_55_7
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8680..9486
DNA (807bp) protein (269aa)
XRE family transcriptional regulator n=1 Tax=Clostridium botulinum RepID=UPI00031F11F7
Response regulator {ECO:0000313|EMBL:AIY80239.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
KDP operon transcriptional regulatory protein KdpE
L3_072_362G1_scaffold_55_8
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9559..10785
DNA (1227bp) protein (409aa)
Protein PrkA n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MWA7_9CLOT
prkA; protein PrkA
Protein PrkA {ECO:0000313|EMBL:AGF58891.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
L3_072_362G1_scaffold_55_9
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10794..11969
DNA (1176bp) protein (392aa)
UPF0229 protein Cbei_0567 n=2 Tax=Clostridium RepID=Y567_CLOB8
hypothetical protein
UPF0229 protein X276_04775 {ECO:0000256|HAMAP-Rule:MF_01232}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
L3_072_362G1_scaffold_55_10
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11971..13341
DNA (1371bp) protein (457aa)
Stage V sporulation protein R n=3 Tax=Clostridium butyricum RepID=B1R120_CLOBU
Stage V sporulation protein R {ECO:0000313|EMBL:EEP55233.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
spoVR; stage V sporulation protein R
L3_072_362G1_scaffold_55_11
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13663..14340
DNA (678bp) protein (226aa)
Transcriptional regulator n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TYR4_9CLOT
Transcriptional regulator {ECO:0000313|EMBL:EKQ58095.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
hypothetical protein
L3_072_362G1_scaffold_55_12
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15196..16905)
DNA (1710bp) protein (570aa)
Methyl-accepting chemotaxis protein n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6UB04_9CLOT
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:EKQ56214.1}; Flags: Precursor;; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
methyl-accepting chemotaxis sensory transducer
L3_072_362G1_scaffold_55_13
unknown

Not on your lists

17091..17330
DNA (240bp) protein (80aa)

This feature has no annotations

L3_072_362G1_scaffold_55_14
Eubacterium limosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17353..18075
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Eubacterium limosum (strain KIST612) RepID=E3GDR7_EUBLK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO36997.1}; TaxID=903814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium limosum (strain KIST612).;"
L3_072_362G1_scaffold_55_15
Eubacterium limosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18093..19403
DNA (1311bp) protein (437aa)
Uncharacterized protein n=1 Tax=Eubacterium limosum (strain KIST612) RepID=E3GDS3_EUBLK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO37003.1}; TaxID=903814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium limosum (strain KIST612).;"
L3_072_362G1_scaffold_55_16
[Clostridium] papyrosolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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19547..24736
DNA (5190bp) protein (1730aa)
LPXTG-motif cell wall anchor domain protein n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=F1T817_9CLOT
LPXTG-motif cell wall anchor domain protein {ECO:0000313|EMBL:EGD49615.1}; TaxID=588581 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] papyrosolvens DSM 2782.;"
Cna B domain-containing protein
L3_072_362G1_scaffold_55_17
Clostridiales bacterium oral taxon 876, Clostridiales, Clostridia, Firmicutes, Bacteria

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24823..25422
DNA (600bp) protein (200aa)
Sortase family protein n=1 Tax=Clostridiales bacterium oral taxon 876 str. F0540 RepID=U2EJ03_9FIRM
Sortase family protein {ECO:0000313|EMBL:ERI94607.1}; TaxID=1321778 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium oral taxon 876 str. F0540.;"
srta; sortase
L3_072_362G1_scaffold_55_18
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25520..26062
DNA (543bp) protein (181aa)
UPI0003D63629 related cluster n=1 Tax=unknown RepID=UPI0003D63629
Rubrerythrin {ECO:0000313|EMBL:ETI89242.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
rubrerythrin
L3_072_362G1_scaffold_55_19
unknown

Not on your lists

26075..26335
DNA (261bp) protein (87aa)

This feature has no annotations

L3_072_362G1_scaffold_55_20
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26593..27069
DNA (477bp) protein (159aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=A6LQX8_CLOB8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ETD71053.1}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
L3_072_362G1_scaffold_55_21
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27005..27526)
DNA (522bp) protein (174aa)
CDP-diacylglycerol--serine O-phosphatidyltransferase (EC:2.7.8.8)
CDP-diacylglycerol--serine O-phosphatidyltransferase {ECO:0000313|EMBL:AGF58887.1}; EC=2.7.8.8 {ECO:0000313|EMBL:AGF58887.1};; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
CDP-diacylglycerol--serine O-phosphatidyltransferase n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1N653_9CLOT
L3_072_362G1_scaffold_55_22
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27766..28644
DNA (879bp) protein (293aa)
Diacylglycerol kinase, catalytic region n=1 Tax=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) RepID=A6LQY0_CLOB8
putative lipid kinase
Putative lipid kinase {ECO:0000313|EMBL:AJG97269.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
L3_072_362G1_scaffold_55_23
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28696..29346
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MW69_CLOSA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGX45019.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_072_362G1_scaffold_55_24
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29395..29943)
DNA (549bp) protein (183aa)
UPI0003D5921C related cluster n=1 Tax=unknown RepID=UPI0003D5921C
Uncharacterized protein {ECO:0000313|EMBL:KJZ87538.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
hypothetical protein
L3_072_362G1_scaffold_55_25
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30050..32014)
DNA (1965bp) protein (655aa)
Uncharacterized protein n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8G3E4_CLOPA
UPF0313 protein X276_04730 {ECO:0000256|HAMAP-Rule:MF_01251}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
hypothetical protein
L3_072_362G1_scaffold_55_26
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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32708..33955
DNA (1248bp) protein (416aa)
MgtE intracellular region n=1 Tax=Clostridium sp. DL-VIII RepID=G7M747_9CLOT
MgtE intracellular region {ECO:0000313|EMBL:EHJ01878.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
MgtE integral membrane protein
L3_072_362G1_scaffold_55_27
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34458..35369
DNA (912bp) protein (304aa)
Cysteine synthase {ECO:0000256|RuleBase:RU003985}; EC=2.5.1.47 {ECO:0000256|RuleBase:RU003985};; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
cysK2; cysteine synthase CysK (EC:2.5.1.47)
Cysteine synthase n=1 Tax=Clostridium sp. DL-VIII RepID=G7M746_9CLOT
L3_072_362G1_scaffold_55_28
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35413..36003
DNA (591bp) protein (197aa)
Serine acetyltransferase {ECO:0000256|PIRNR:PIRNR000441}; EC=2.3.1.30 {ECO:0000256|PIRNR:PIRNR000441};; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
Serine acetyltransferase n=4 Tax=Clostridium butyricum RepID=B1R132_CLOBU
serine O-acetyltransferase
L3_072_362G1_scaffold_55_29
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

36014..37012
DNA (999bp) protein (333aa)
Iron-sulfur cluster-binding protein n=4 Tax=Clostridium butyricum RepID=B1R133_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ31051.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
iron-sulfur cluster-binding protein
L3_072_362G1_scaffold_55_30
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

37188..37892
DNA (705bp) protein (235aa)
plsD; glycerol-3-phosphate O-acyltransferase PlsD (EC:2.3.1.15)
Glycerol-3-phosphate O-acyltransferase n=2 Tax=Clostridium butyricum RepID=M8KB41_CLOBU
1-acylglycerol-3-phosphate O-acyltransferase {ECO:0000313|EMBL:ENZ31050.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
Displaying items 1-30 of 106 in total

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