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L3_072_362G1_scaffold_71

Search features with annotation key words

Displaying items 1-30 of 102 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_362G1_scaffold_71_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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126..1619
DNA (1494bp) protein (498aa)
ATP-dependent RNA helicase {ECO:0000313|EMBL:CEJ98787.1}; EC=3.6.4.13 {ECO:0000313|EMBL:CKH24145.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
ATP-dependent RNA helicase dbpA n=2 Tax=Clostridium difficile RepID=T4PK06_CLODI
csdA; ATP-dependent RNA helicase
L3_072_362G1_scaffold_71_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1639..1926
DNA (288bp) protein (96aa)
Uncharacterized protein n=17 Tax=Clostridium difficile RepID=G6BQ01_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CCL22488.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
hypothetical protein
L3_072_362G1_scaffold_71_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2082..2846
DNA (765bp) protein (255aa)
Alpha/beta hydrolase fold family protein n=43 Tax=Clostridium difficile RepID=T2VMY1_CLODI
Putative alpha/beta hydrolase {ECO:0000313|EMBL:CCL22487.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
aromatic compounds hydrolase
L3_072_362G1_scaffold_71_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2867..3001
DNA (135bp) protein (45aa)
MerR HTH regulatory family protein n=2 Tax=Clostridium difficile RepID=T3UF15_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CDS87452.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_072_362G1_scaffold_71_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3131..6310)
DNA (3180bp) protein (1060aa)
Type III restriction enzyme, res subunit n=2 Tax=Clostridium difficile RepID=T4PJS6_CLODI
Type III restriction enzyme, res subunit {ECO:0000313|EMBL:EQH98988.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
putative DEAD-like helicase
L3_072_362G1_scaffold_71_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6591..8768
DNA (2178bp) protein (726aa)
Putative anaerobic dehydrogenase {ECO:0000313|EMBL:CAJ69063.1}; EC=1.7.99.4 {ECO:0000313|EMBL:CAJ69063.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
putative anaerobic dehydrogenase (EC:1.7.99.4)
Molybdopterin dinucleotide binding domain protein n=37 Tax=Clostridium difficile RepID=T2XH79_CLODI
L3_072_362G1_scaffold_71_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8782..9213
DNA (432bp) protein (144aa)
4Fe-4S binding domain protein n=71 Tax=Clostridium difficile RepID=T3GJZ1_CLODC
putative oxidoreductase, Fe-S subunit
Iron-sulfur subunit of hydrogenase {ECO:0000313|EMBL:CKH23977.1}; Putative oxidoreductase, Fe-S subunit {ECO:0000313|EMBL:CEJ98782.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_072_362G1_scaffold_71_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9378..9953
DNA (576bp) protein (192aa)
NADPH-dependent FMN reductase family protein n=20 Tax=Clostridium difficile RepID=T2ZGM6_CLODI
Flavin reductase {ECO:0000313|EMBL:CCL30398.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
NADPH-dependent FMN reductase
L3_072_362G1_scaffold_71_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10078..10794)
DNA (717bp) protein (239aa)
Putative cNMP-binding regulatory protein n=3 Tax=Clostridium difficile RepID=U3XJ54_CLODI
Putative cNMP-binding regulatory protein {ECO:0000313|EMBL:CCL30397.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
cNMP-binding regulatory protein
L3_072_362G1_scaffold_71_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10959..11684
DNA (726bp) protein (242aa)
4Fe-4S binding domain protein n=125 Tax=Clostridium difficile RepID=T3GHA7_CLODC
putative iron-sulfur binding protein
4Fe-4S binding domain protein {ECO:0000313|EMBL:EQH98976.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
L3_072_362G1_scaffold_71_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11744..13336
DNA (1593bp) protein (531aa)
Hydroxylamine reductase {ECO:0000256|HAMAP-Rule:MF_00069, ECO:0000256|SAAS:SAAS00038686}; EC=1.7.99.1 {ECO:0000256|HAMAP-Rule:MF_00069, ECO:0000256|SAAS:SAAS00150119};; Hybrid-cluster protein {ECO:0000256|HAMAP-Rule:MF_00069}; Prismane protein {ECO:0000256|HAMAP-Rule:MF_00069}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
hcp; Hydroxylamine reductase (EC:1.7.-.-)
Hydroxylamine reductase n=108 Tax=Clostridium difficile RepID=T3GIF6_CLODC
L3_072_362G1_scaffold_71_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13690..14613
DNA (924bp) protein (308aa)
Phospholipase, patatin family n=73 Tax=Clostridium difficile RepID=G6BQ19_CLODI
Acyl transferase/acylhydrolase/lysophospholipase
Patatin-like phospholipase family protein {ECO:0000313|EMBL:EQH98974.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
L3_072_362G1_scaffold_71_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14737..15690
DNA (954bp) protein (318aa)
msrAB; peptide methionine sulfoxide reductase MsrA/MsrB (EC:1.8.4.12 1.8.4.11)
Peptide-methionine (S)-S-oxide reductase {ECO:0000313|EMBL:EQG75738.1}; EC=1.8.4.11 {ECO:0000313|EMBL:EQG75738.1};; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
Peptide methionine sulfoxide reductase MsrA/MsrB n=95 Tax=Clostridium difficile RepID=Q185V3_CLOD6
L3_072_362G1_scaffold_71_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15843..16973
DNA (1131bp) protein (377aa)
Transcriptional regulator, HTH-type n=151 Tax=Clostridium difficile RepID=Q185V4_CLOD6
Transcriptional regulator, HTH-type
Transcriptional regulator, HTH-type {ECO:0000313|EMBL:CCL22464.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_072_362G1_scaffold_71_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17090..18058)
DNA (969bp) protein (323aa)
L-lactate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00488}; Short=L-LDH {ECO:0000256|HAMAP-Rule:MF_00488};; EC=1.1.1.27 {ECO:0000256|HAMAP-Rule:MF_00488};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
ldh; L-lactate dehydrogenase (L-LDH) (EC:1.1.1.27)
L-lactate dehydrogenase n=163 Tax=Clostridium difficile RepID=G6BQ22_CLODI
L3_072_362G1_scaffold_71_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18393..18581
DNA (189bp) protein (63aa)
Uncharacterized protein n=99 Tax=Clostridium difficile RepID=G6BQ23_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CCL30390.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
conserved hypothetical protein
L3_072_362G1_scaffold_71_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18841..20040
DNA (1200bp) protein (400aa)
Threonyl and Alanyl tRNA synthetase second additional domain protein n=2 Tax=Clostridium difficile RepID=T4PJY9_CLODI
RNA-binding protein
Putative RNA-binding protein {ECO:0000313|EMBL:CBE05105.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L3_072_362G1_scaffold_71_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20092..20595
DNA (504bp) protein (168aa)
Acetyltransferase, GNAT family n=91 Tax=Clostridium difficile RepID=G6BQ25_CLODI
acetyltransferase
Putative GCN5-related N-acetyltransferase-like protein {ECO:0000313|EMBL:EQH98968.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
L3_072_362G1_scaffold_71_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20702..21019
DNA (318bp) protein (106aa)
Uncharacterized protein n=203 Tax=Clostridium difficile RepID=G6BC70_CLODI
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:EQE62657.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_072_362G1_scaffold_71_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21177..22136
DNA (960bp) protein (320aa)
VanZ like family protein n=107 Tax=Clostridium difficile RepID=T2TKI7_CLODI
Putative membrane protein {ECO:0000313|EMBL:CCL22458.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
putative membrane protein
L3_072_362G1_scaffold_71_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22251..23036
DNA (786bp) protein (262aa)
Uncharacterized protein n=101 Tax=Clostridium difficile RepID=G6BQ28_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQI82484.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
putative membrane protein, DUF1114 family
L3_072_362G1_scaffold_71_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23328..24647
DNA (1320bp) protein (440aa)
gabT; 4-aminobutyrate aminotransferase (EC:2.6.1.-)
4-aminobutyrate aminotransferase {ECO:0000313|EMBL:CCK94616.1}; EC=2.6.1.- {ECO:0000313|EMBL:CCK94616.1};; TaxID=1225722 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E1.;"
Aminotransferase class-III family protein n=2 Tax=Clostridium difficile RepID=T4PJY3_CLODI
L3_072_362G1_scaffold_71_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24722..25150)
DNA (429bp) protein (143aa)
Uncharacterized protein n=150 Tax=Clostridium difficile RepID=C9XK21_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQH98963.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
L3_072_362G1_scaffold_71_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25241..26617)
DNA (1377bp) protein (459aa)
Radical SAM-superfamily protein n=165 Tax=Clostridium difficile RepID=C9XK20_CLODC
thiH; thiamine biosynthesis protein ThiH
Thiamine biosynthesis protein ThiH {ECO:0000313|EMBL:CCL22454.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_072_362G1_scaffold_71_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26618..27703)
DNA (1086bp) protein (362aa)
bioB1; Biotin synthase (EC:2.8.1.6)
Biotin synthase {ECO:0000313|EMBL:CCL22453.1}; EC=2.8.1.6 {ECO:0000313|EMBL:CCL22453.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Biotin synthase n=158 Tax=Clostridium difficile RepID=Q185U5_CLOD6
L3_072_362G1_scaffold_71_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27739..28947)
DNA (1209bp) protein (403aa)
[FeFe] hydrogenase H-cluster maturation GTPase HydF n=2 Tax=Clostridium difficile RepID=T4PDT2_CLODI
[FeFe] hydrogenase H-cluster maturation GTPase HydF {ECO:0000313|EMBL:EQH98960.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
putative ATP/GTP-binding protein
L3_072_362G1_scaffold_71_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28962..29213)
DNA (252bp) protein (84aa)
Uncharacterized protein n=205 Tax=Clostridium difficile RepID=C9XK17_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL22451.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_072_362G1_scaffold_71_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29594..30634)
DNA (1041bp) protein (347aa)
M42 glutamyl aminopeptidase family protein n=162 Tax=Clostridium difficile RepID=C9XK16_CLODC
glutamyl-aminopeptidase
M42 glutamyl aminopeptidase family protein {ECO:0000313|EMBL:EQE62647.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_072_362G1_scaffold_71_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31095..32264
DNA (1170bp) protein (390aa)
Uncharacterized protein n=84 Tax=Clostridium difficile RepID=G6BC80_CLODI
Putative membrane protein, DUF819 family {ECO:0000313|EMBL:CCL22449.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
hypothetical protein
L3_072_362G1_scaffold_71_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32607..32768
DNA (162bp) protein (54aa)
Uncharacterized protein n=221 Tax=Clostridium difficile RepID=T3GIR6_CLODC
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL30376.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
Displaying items 1-30 of 102 in total

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