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L3_072_362G1_scaffold_96

Search features with annotation key words

Displaying items 1-30 of 105 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_362G1_scaffold_96_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3..104
DNA (102bp) protein (34aa)
ABC-type antimicrobial peptide transport system, ATPase component n=3 Tax=Bifidobacterium bifidum RepID=E4NYQ2_BIFBP
lolD; lipo protein-releasing system ATP-binding protein
ABC transporter ATP-binding component {ECO:0000313|EMBL:BAQ98675.1}; ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ERI83431.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_072_362G1_scaffold_96_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

359..640
DNA (282bp) protein (94aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EQG8_BIFBS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO53624.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_072_362G1_scaffold_96_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(710..1765)
DNA (1056bp) protein (352aa)
NAD-dependent oxidoreductase {ECO:0000313|EMBL:KFI43796.1}; EC=1.1.1.179 {ECO:0000313|EMBL:KFI43796.1};; EC=1.3.1.20 {ECO:0000313|EMBL:KFI43796.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
NAD-dependent oxidoreductase n=2 Tax=Bifidobacterium bifidum RepID=E3EQG9_BIFBS
NAD-dependent oxidoreductase
L3_072_362G1_scaffold_96_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1993..2511)
DNA (519bp) protein (173aa)
Low molecular weight protein-tyrosine-phosphatase n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EQH0_BIFBS
ptpA; low molecular weight protein-tyrosine-phosphatase
Low molecular weight protein-tyrosine-phosphatase {ECO:0000313|EMBL:ADO53626.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_072_362G1_scaffold_96_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2581..3240)
DNA (660bp) protein (220aa)
Dihydrofolate reductase {ECO:0000313|EMBL:AFL05050.1}; EC=1.5.1.3 {ECO:0000313|EMBL:AFL05050.1};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Dihydrofolate reductase n=8 Tax=Bifidobacterium RepID=E3EQH1_BIFBS
dfrA; dihydrofolate reductase
L3_072_362G1_scaffold_96_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3288..4160)
DNA (873bp) protein (291aa)
thyA; thymidylate synthase (EC:2.1.1.45)
Thymidylate synthase {ECO:0000256|HAMAP-Rule:MF_00008, ECO:0000256|SAAS:SAAS00215270}; Short=TS {ECO:0000256|HAMAP-Rule:MF_00008};; Short=TSase {ECO:0000256|HAMAP-Rule:MF_00008};; EC=2.1.1.45 {ECO:0000256|HAMAP-Rule:MF_00008, ECO:0000256|SAAS:SAAS00215290};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Thymidylate synthase n=3 Tax=Bifidobacterium RepID=I3WJI8_BIFBI
L3_072_362G1_scaffold_96_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4614..5027
DNA (414bp) protein (138aa)
OsmC family protein n=4 Tax=Bifidobacterium RepID=E3EQH3_BIFBS
OsmC family protein
OsmC family protein {ECO:0000313|EMBL:EKF16587.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_072_362G1_scaffold_96_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5169..6209)
DNA (1041bp) protein (347aa)
Universal stress protein n=4 Tax=Bifidobacterium bifidum RepID=E3EQH4_BIFBS
universal stress protein family
Universal stress protein {ECO:0000313|EMBL:AFL05053.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_072_362G1_scaffold_96_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6489..7295)
DNA (807bp) protein (269aa)
Cell wall-associated protein (NlpC/P60 family domain) n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GCF3_9BIFI
NlpC/P60 domain
Uncharacterized protein {ECO:0000313|EMBL:ADO53631.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_072_362G1_scaffold_96_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7446..8468)
DNA (1023bp) protein (341aa)
sle; N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28)
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:AFL05055.1}; EC=3.5.1.28 {ECO:0000313|EMBL:AFL05055.1};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WJJ2_BIFBI
L3_072_362G1_scaffold_96_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8633..9775
DNA (1143bp) protein (381aa)
Phosphoserine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; EC=2.6.1.52 {ECO:0000256|HAMAP-Rule:MF_00160};; Phosphohydroxythreonine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
Phosphoserine aminotransferase n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HQR9_BIFBI
serC; phosphoserine aminotransferase
L3_072_362G1_scaffold_96_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9886..10140
DNA (255bp) protein (85aa)
Uncharacterized protein n=4 Tax=Bifidobacterium RepID=I3WJJ5_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO53634.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_072_362G1_scaffold_96_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10147..11415)
DNA (1269bp) protein (423aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
senX3; sensor-like histidine kinase (EC:2.7.13.3)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4VBU9_BIFBI
L3_072_362G1_scaffold_96_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11599..12279
DNA (681bp) protein (227aa)
Phosphate-specific transport system accessory protein PhoU n=5 Tax=Bifidobacterium bifidum RepID=I3WJJ7_BIFBI
phoU; phosphate transport system regulatory protein
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_072_362G1_scaffold_96_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12499..12771)
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4VBU7_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EFR51062.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
hypothetical protein
L3_072_362G1_scaffold_96_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12815..13603)
DNA (789bp) protein (263aa)
gpm2; phosphoglycerate mutase (EC:5.4.2.1)
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01039, ECO:0000256|RuleBase:RU004512}; Short=BPG-dependent PGAM {ECO:0000256|HAMAP-Rule:MF_01039};; Short=PGAM {ECO:0000256|HAMAP-Rule:MF_01039};; Short=Phosphoglyceromutase {ECO:0000256|HAMAP-Rule:MF_01039};; Short=dPGM {ECO:0000256|HAMAP-Rule:MF_01039};; EC=5.4.2.11 {ECO:0000256|HAMAP-Rule:MF_01039, ECO:0000256|RuleBase:RU004512};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase n=7 Tax=Bifidobacterium bifidum RepID=E4NYR6_BIFBP
L3_072_362G1_scaffold_96_17
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13633..14598)
DNA (966bp) protein (322aa)
1,4-dihydroxy-2-naphthoate octaprenyltransferase {ECO:0000256|HAMAP-Rule:MF_01937}; Short=DHNA-octaprenyltransferase {ECO:0000256|HAMAP-Rule:MF_01937};; EC=2.5.1.74 {ECO:0000256|HAMAP-Rule:MF_01937};; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
1,4-dihydroxy-2-naphthoateoctaprenyl transferase n=2 Tax=Bifidobacterium RepID=I3WJK0_BIFBI
menA; 1,4-dihydroxy-2-naphthoateoctaprenyl transferase
L3_072_362G1_scaffold_96_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14814..16505)
DNA (1692bp) protein (564aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
Lysine--tRNA ligase n=4 Tax=Bifidobacterium bifidum RepID=E3ER65_BIFBS
lysS; Lysyl-tRNA synthetase
L3_072_362G1_scaffold_96_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16872..18059
DNA (1188bp) protein (396aa)
Transporter, major facilitator family protein n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4VBU3_BIFBI
araJ; arabinose polymer MFS transporter
Arabinose polymer MFS transporter {ECO:0000313|EMBL:EKE50158.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L3_072_362G1_scaffold_96_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18236..20299
DNA (2064bp) protein (688aa)
Tetratricopeptide repeat protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 PF8_BIFBI">RepID=U2DPF8_BIFBI
Tetratricopeptide TPR_2 repeat protein {ECO:0000313|EMBL:KFI43812.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
hypothetical protein
L3_072_362G1_scaffold_96_21
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20368..20979
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GPC9_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDB23116.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
hypothetical protein
L3_072_362G1_scaffold_96_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21034..22011)
DNA (978bp) protein (326aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WJK5_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL05068.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_072_362G1_scaffold_96_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22044..23759)
DNA (1716bp) protein (572aa)
PspC domain protein n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4VBT9_BIFBI
PspC domain protein {ECO:0000313|EMBL:EFR51054.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
PspC domain
L3_072_362G1_scaffold_96_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23840..25318
DNA (1479bp) protein (493aa)
Histidine kinase sensor of two component system n=4 Tax=Bifidobacterium bifidum RepID=E4NYS4_BIFBP
histidine kinase sensor
Histidine kinase sensor of two component system {ECO:0000313|EMBL:KFI43816.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_072_362G1_scaffold_96_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25315..26148
DNA (834bp) protein (278aa)
Response regulator of two-component system n=3 Tax=Bifidobacterium bifidum RepID=K2I5Y4_BIFBI
Two-component system response regulator {ECO:0000313|EMBL:KFI43817.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
response regulator of two-component system
L3_072_362G1_scaffold_96_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26270..27718
DNA (1449bp) protein (483aa)
6-phosphogluconate dehydrogenase, decarboxylating {ECO:0000256|PIRNR:PIRNR000109}; EC=1.1.1.44 {ECO:0000256|PIRNR:PIRNR000109};; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
6-phosphogluconate dehydrogenase, decarboxylating n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ER73_BIFBS
gnt; 6-phosphogluconate dehydrogenase
L3_072_362G1_scaffold_96_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27796..28398)
DNA (603bp) protein (201aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ER74_BIFBS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO53649.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_072_362G1_scaffold_96_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28587..29375)
DNA (789bp) protein (263aa)
6-phosphogluconolactonase n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ER75_BIFBS
pgl; 6-phosphogluconolactonase
6-phosphogluconolactonase {ECO:0000313|EMBL:ADO53650.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_072_362G1_scaffold_96_29
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29544..30512)
DNA (969bp) protein (323aa)
Oxppcycle protein OpcA n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GCE2_9BIFI
Oxppcycle protein OpcA {ECO:0000313|EMBL:CDB23108.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Oxppcycle protein OpcA
L3_072_362G1_scaffold_96_30
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30509..32095)
DNA (1587bp) protein (529aa)
Glucose-6-phosphate 1-dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497}; Short=G6PD {ECO:0000256|HAMAP-Rule:MF_00966};; EC=1.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497};; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
zwf; glucose-6-phosphate 1-dehydrogenase (EC:1.1.1.49)
Glucose-6-phosphate 1-dehydrogenase n=4 Tax=Bifidobacterium RepID=R6HA80_9BIFI
Displaying items 1-30 of 105 in total

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