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L3_072_362G1_scaffold_245

Search features with annotation key words

Displaying items 1-30 of 52 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_362G1_scaffold_245_1
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

226..780
DNA (555bp) protein (185aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
Peptide deformylase n=13 Tax=Lactobacillus rhamnosus RepID=B5QMW7_LACRH
peptide deformylase
L3_072_362G1_scaffold_245_2
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(822..1121)
DNA (300bp) protein (100aa)
Uncharacterized protein n=5 Tax=Lactobacillus rhamnosus RepID=C7TIY6_LACRL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP74007.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_362G1_scaffold_245_3
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(1144..1596)
DNA (453bp) protein (151aa)
Conserved protein n=5 Tax=Lactobacillus rhamnosus RepID=C7TIY5_LACRL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP74006.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_362G1_scaffold_245_4
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

2091..2303
DNA (213bp) protein (71aa)
UPF0356 protein LRH_05926 n=11 Tax=Lactobacillus rhamnosus RepID=B5QMW3_LACRH
hypothetical protein
UPF0356 protein HMPREF0539_1360 {ECO:0000256|HAMAP-Rule:MF_01553}; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
L3_072_362G1_scaffold_245_5
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

2308..3990
DNA (1683bp) protein (561aa)
mRNA degradation ribonuclease J1/J2, metallo-beta-lactamase superfamily enzyme n=7 Tax=Lactobacillus rhamnosus RepID=B5QMW2_LACRH
Metallo-beta-lactamase superfamily protein
Zn-dependent hydrolase, RNA-metabolising {ECO:0000313|EMBL:AGP74003.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_362G1_scaffold_245_6
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

4242..5192
DNA (951bp) protein (317aa)
Lipid kinase, YegS/Rv2252/BmrU family {ECO:0000313|EMBL:EEN80507.1}; EC=2.7.1.- {ECO:0000313|EMBL:EEN80507.1};; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
Diacylglycerol kinase family protein n=4 Tax=Lactobacillus rhamnosus RepID=C7TIY2_LACRL
diacylglycerol kinase family protein
L3_072_362G1_scaffold_245_7
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(5322..6539)
DNA (1218bp) protein (406aa)
Acetyltransferase n=9 Tax=Lactobacillus rhamnosus RepID=B5QMV9_LACRH
acetyltransferase
GNAT family acetyltransferase {ECO:0000313|EMBL:KIC97911.1}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
L3_072_362G1_scaffold_245_8
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(6545..9013)
DNA (2469bp) protein (823aa)
ATP-dependent RecD-like DNA helicase {ECO:0000256|HAMAP-Rule:MF_01488}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_01488};; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
Helicase, RecD/TraA family protein n=5 Tax=Lactobacillus rhamnosus RepID=C7TIY0_LACRL
viral (Super1) RNA helicase family protein
L3_072_362G1_scaffold_245_9
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(8997..9668)
DNA (672bp) protein (224aa)
TPR repeats containing protein n=5 Tax=Lactobacillus rhamnosus RepID=C7TIX9_LACRL
anaphase-promoting complex, cyclosome, subunit 3 family protein
Uncharacterized protein {ECO:0000313|EMBL:AGP73999.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_362G1_scaffold_245_10
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(9714..10376)
DNA (663bp) protein (221aa)
Phosphoglycerate mutase family protein n=10 Tax=Lactobacillus rhamnosus RepID=B5QMV6_LACRH
gpm; phosphoglycerate mutase family protein
Phosphoglycerate mutase family 5 {ECO:0000313|EMBL:AGP73998.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_362G1_scaffold_245_11
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(10834..12111)
DNA (1278bp) protein (426aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=525337 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei ATCC 25302.;"
tRNA-specific 2-thiouridylase MnmA n=3 Tax=Lactobacillus casei RepID=B3WE03_LACCB
mnmA; tRNA-specific 2-thiouridylase mnmA
L3_072_362G1_scaffold_245_12
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(12083..14356)
DNA (2274bp) protein (758aa)
Excinuclease ABC, subunit A n=4 Tax=Lactobacillus rhamnosus RepID=C7TIX5_LACRL
Excinuclease ABC subunit A-like protein {ECO:0000313|EMBL:AGP73994.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
ABC transporter family protein
L3_072_362G1_scaffold_245_13
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(14573..15148)
DNA (576bp) protein (192aa)
Uncharacterized protein n=12 Tax=Lactobacillus rhamnosus RepID=S5A4N1_LACRH
Hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EEN80500.1}; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
L3_072_362G1_scaffold_245_14
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(15208..16371)
DNA (1164bp) protein (388aa)
Cysteine desulfurase n=4 Tax=Lactobacillus rhamnosus RepID=C7TIX3_LACRL
iscS; cysteine desulfurase
Cysteine desulfurase {ECO:0000313|EMBL:KIC97917.1}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
L3_072_362G1_scaffold_245_15
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(16383..17093)
DNA (711bp) protein (237aa)
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1 {ECO:0000256|SAAS:SAAS00035231}; EC=3.2.2.9 {ECO:0000256|SAAS:SAAS00035196};; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase {ECO:0000256|SAAS:SAAS00035261}; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2 {ECO:0000256|SAAS:SAAS00035188}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
Nucleoside phosphorylase n=9 Tax=Lactobacillus rhamnosus RepID=B5QMV1_LACRH
mtnN; MTA/SAH nucleosidase
L3_072_362G1_scaffold_245_16
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(17170..17430)
DNA (261bp) protein (87aa)
Small membrane protein n=12 Tax=Lactobacillus rhamnosus RepID=B5QMV0_LACRH
small membrane protein
Small membrane protein {ECO:0000313|EMBL:AGP73990.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_362G1_scaffold_245_17
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(17417..17965)
DNA (549bp) protein (183aa)
NUDIX hydrolase n=4 Tax=Lactobacillus rhamnosus RepID=C7TIX0_LACRL
NUDIX domain-containing protein
ADP-ribose pyrophosphatase {ECO:0000313|EMBL:AGP73989.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_362G1_scaffold_245_18
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

18174..18836
DNA (663bp) protein (221aa)
5-bromo-4-chloroindolyl phosphate hydrolysis protein n=3 Tax=Lactobacillus rhamnosus RepID=C7TIW9_LACRL
5-bromo-4-chloroindolyl phosphate hydrolysis protein
5-bromo-4-chloroindolyl phosphate hydrolysis protein {ECO:0000313|EMBL:AGP73988.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_362G1_scaffold_245_19
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

18842..20029
DNA (1188bp) protein (396aa)
Tellurite resistance protein n=2 Tax=Lactobacillus rhamnosus RepID=S5AAE9_LACRH
Tellurite resistance protein
Tellurite resistance protein {ECO:0000313|EMBL:AGP73987.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_362G1_scaffold_245_20
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(20158..21630)
DNA (1473bp) protein (491aa)
MFS family major facilitator transporter n=2 Tax=Lactobacillus rhamnosus RepID=S5A1R7_LACRH
MFS family major facilitator transporter
MFS family major facilitator transporter {ECO:0000313|EMBL:AGP73986.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_362G1_scaffold_245_21
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

21770..22675
DNA (906bp) protein (302aa)
ABC-type phosphate transport system, periplasmic component n=13 Tax=Lactobacillus rhamnosus RepID=B5QMU5_LACRH
pstS; phosphate ABC transporter substrate-binding protein
Phosphate ABC transporter, periplasmic phosphate-binding protein PstS {ECO:0000313|EMBL:AGP73985.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_362G1_scaffold_245_22
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(22897..23121)
DNA (225bp) protein (75aa)
Cold shock protein n=11 Tax=Lactobacillus rhamnosus RepID=B5QMU4_LACRH
cspB; cold shock protein CspB
Cold shock protein CspG {ECO:0000313|EMBL:AGP73984.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_362G1_scaffold_245_23
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(23134..25920)
DNA (2787bp) protein (929aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02002}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
Isoleucine--tRNA ligase n=5 Tax=Lactobacillus rhamnosus RepID=C7TIW4_LACRL
ileS; isoleucine--tRNA ligase
L3_072_362G1_scaffold_245_24
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(26163..26951)
DNA (789bp) protein (263aa)
DivIVA domain protein n=4 Tax=Lactobacillus rhamnosus RepID=G7UZE1_LACRH
Cell division initiation protein DivIVA
DivIVA domain protein {ECO:0000313|EMBL:EEN80489.1}; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
L3_072_362G1_scaffold_245_25
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(27122..27901)
DNA (780bp) protein (260aa)
Cell division protein, S4-like domain n=9 Tax=Lactobacillus rhamnosus RepID=B5QMU1_LACRH
S4 domain-containing protein
RNA-binding S4 domain-containing protein {ECO:0000313|EMBL:EKS52593.1}; TaxID=1203258 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LRHMDP2.;"
L3_072_362G1_scaffold_245_26
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(27907..28194)
DNA (288bp) protein (96aa)
Cell division membrane protein n=11 Tax=Lactobacillus rhamnosus RepID=B5QMU0_LACRH
hypothetical protein
Cell division protein {ECO:0000313|EMBL:KIC97928.1}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
L3_072_362G1_scaffold_245_27
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(28207..28662)
DNA (456bp) protein (152aa)
Cell division protein SepF n=9 Tax=Lactobacillus rhamnosus RepID=B5QMT9_LACRH
sepF; cell division protein sepF
Cell division protein SepF {ECO:0000256|HAMAP-Rule:MF_01197}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_362G1_scaffold_245_28
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(28680..29945)
DNA (1266bp) protein (422aa)
Cell division protein FtsZ n=5 Tax=Lactobacillus rhamnosus RepID=C7TIV9_LACRL
ftsZ; cell division protein FtsZ
Cell division protein FtsZ {ECO:0000256|HAMAP-Rule:MF_00909, ECO:0000256|RuleBase:RU000631}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_362G1_scaffold_245_29
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(29970..31307)
DNA (1338bp) protein (446aa)
Cell division protein ftsA n=6 Tax=Lactobacillus rhamnosus RepID=C7TIV8_LACRL
ftsA; cell division protein FtsA
Cell division protein ftsA {ECO:0000256|PIRNR:PIRNR003101}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_362G1_scaffold_245_30
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(31420..32280)
DNA (861bp) protein (287aa)
Cell division protein DivIB n=10 Tax=Lactobacillus rhamnosus RepID=B5QMT6_LACRH
Cell division protein FtsQ
Cell division protein DivIB {ECO:0000256|HAMAP-Rule:MF_00912}; TaxID=1203258 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LRHMDP2.;"
Displaying items 1-30 of 52 in total

View Taxonomy