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L3_072_362G1_scaffold_351

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_362G1_scaffold_351_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1..909)
DNA (909bp) protein (303aa)
Glucose-6-phosphate isomerase {ECO:0000256|RuleBase:RU000612, ECO:0000256|SAAS:SAAS00031329}; EC=5.3.1.9 {ECO:0000256|RuleBase:RU000612, ECO:0000256|SAAS:SAAS00031329};; Flags: Fragment;; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
Glucose-6-phosphate isomerase n=3 Tax=Bifidobacterium bifidum RepID=E3EPN1_BIFBS
gpi; glucose-6-phosphate isomerase
L3_072_362G1_scaffold_351_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1413..2414
DNA (1002bp) protein (334aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2LBH7_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKF15214.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
hypothetical protein
L3_072_362G1_scaffold_351_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2536..3204)
DNA (669bp) protein (223aa)
xanthosine triphosphate pyrophosphatase (EC:3.6.1.15)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-canonical purine NTP pyrophosphatase; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Non-canonical purine NTP pyrophosphatase n=6 Tax=Bifidobacterium bifidum RepID=E3EPM9_BIFBS
L3_072_362G1_scaffold_351_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3285..4016)
DNA (732bp) protein (244aa)
rph; ribonuclease PH (EC:2.7.7.56)
Ribonuclease PH {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104182}; Short=RNase PH {ECO:0000256|HAMAP-Rule:MF_00564};; EC=2.7.7.56 {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104188};; tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00564}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
Ribonuclease PH n=8 Tax=Bifidobacterium RepID=E4NZH1_BIFBP
L3_072_362G1_scaffold_351_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4219..5541
DNA (1323bp) protein (441aa)
pncB; nicotinate phosphoribosyltransferase (EC:2.4.2.11)
Nicotinate phosphoribosyltransferase {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163}; EC=6.3.4.21 {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163};; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
Nicotinate phosphoribosyltransferase n=3 Tax=Bifidobacterium RepID=K2HXU1_BIFBI
L3_072_362G1_scaffold_351_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5407..6327)
DNA (921bp) protein (307aa)
Nicotinate phosphoribosyltransferase n=2 Tax=Bifidobacterium bifidum RepID=E4NZG9_BIFBP
Nicotinate phosphoribosyltransferase
Uncharacterized protein {ECO:0000313|EMBL:ERI82251.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_072_362G1_scaffold_351_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6597..7151)
DNA (555bp) protein (185aa)
Acetolactate synthase, small subunit {ECO:0000313|EMBL:AFL03923.1}; EC=2.2.1.6 {ECO:0000313|EMBL:AFL03923.1};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Acetolactate synthase small subunit n=9 Tax=Bifidobacterium RepID=E3EPM5_BIFBS
ilvN; acetolactate synthase small subunit
L3_072_362G1_scaffold_351_8
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7187..9079)
DNA (1893bp) protein (631aa)
ilvB; acetolactate synthase large subunit (EC:2.2.1.6)
Acetolactate synthase large subunit n=2 Tax=Bifidobacterium RepID=R6H8G9_9BIFI
Acetolactate synthase large subunit {ECO:0000313|EMBL:CDB22507.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_072_362G1_scaffold_351_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9265..10032)
DNA (768bp) protein (256aa)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease 3; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Ribonuclease 3 n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WGA8_BIFBI
rncS; ribonuclease III
L3_072_362G1_scaffold_351_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(10182..10376)
DNA (195bp) protein (65aa)
50S ribosomal protein L32 n=8 Tax=Bifidobacterium RepID=E3EPM2_BIFBS
rpmF; 50S ribosomal protein L32
50S ribosomal protein L32 {ECO:0000256|HAMAP-Rule:MF_00340}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_072_362G1_scaffold_351_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10505..11119)
DNA (615bp) protein (205aa)
Uncharacterized protein n=5 Tax=Bifidobacterium RepID=R6GDV3_9BIFI
hypothetical protein
Putative ACR, COG1399 {ECO:0000313|EMBL:EFR49705.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L3_072_362G1_scaffold_351_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11184..12089)
DNA (906bp) protein (302aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EPM0_BIFBS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO52557.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_072_362G1_scaffold_351_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12173..12667)
DNA (495bp) protein (165aa)
Phosphopantetheine adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109024}; EC=2.7.7.3 {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109037};; Dephospho-CoA pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00151}; Pantetheine-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Phosphopantetheine adenylyltransferase n=2 Tax=Bifidobacterium bifidum RepID=E3EPL9_BIFBS
coaD; phosphopantetheine adenylyltransferase
L3_072_362G1_scaffold_351_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12837..13178
DNA (342bp) protein (114aa)
Uncharacterized protein n=8 Tax=Bifidobacterium RepID=I3WGA3_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO52555.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_072_362G1_scaffold_351_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13194..15314)
DNA (2121bp) protein (707aa)
ATPase component of ABC transporter n=2 Tax=Bifidobacterium bifidum RepID=I3WGA2_BIFBI
uup; ABC transporter ATP-binding protein
ATPase component of ABC transporter {ECO:0000313|EMBL:AFL03915.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_072_362G1_scaffold_351_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15421..16146)
DNA (726bp) protein (242aa)
Amidotransferase n=7 Tax=Bifidobacterium RepID=E3ENR1_BIFBS
amidotransferase
Class I glutamine amidotransferase {ECO:0000313|EMBL:ERI82240.1}; Putative amidotransferase {ECO:0000313|EMBL:BAQ97538.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_072_362G1_scaffold_351_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16293..17915
DNA (1623bp) protein (541aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Cysteine--tRNA ligase n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2BVN0_BIFBI
cysS; cysteinyl-tRNA synthetase
L3_072_362G1_scaffold_351_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18136..19044)
DNA (909bp) protein (303aa)
Cation efflux protein n=4 Tax=Bifidobacterium bifidum RepID=I3WG99_BIFBI
cation efflux protein
Membrane spanning protein {ECO:0000313|EMBL:KFI42423.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_072_362G1_scaffold_351_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


19405..21051
DNA (1647bp) protein (549aa)
Signal recognition particle protein n=5 Tax=Bifidobacterium RepID=E4NZF6_BIFBP
ffh; signal recognition particle protein
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_072_362G1_scaffold_351_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21226..22398
DNA (1173bp) protein (391aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ENQ7_BIFBS
endonuclease/exonuclease/phosphatase domain
Uncharacterized protein {ECO:0000313|EMBL:ADO52549.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_072_362G1_scaffold_351_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22665..23357)
DNA (693bp) protein (231aa)
Lysine exporter protein n=3 Tax=Bifidobacterium RepID=E3ENQ6_BIFBS
lysine exporter
Arginine exporter {ECO:0000313|EMBL:EKE51283.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L3_072_362G1_scaffold_351_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23560..25089
DNA (1530bp) protein (510aa)
multiple substrate aminotransferase (EC:2.6.1.39)
Multiple substrate aminotransferase (MsaT) containing domain of GntR family n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NZF3_BIFBP
HTH-type transcriptional regulator {ECO:0000313|EMBL:AFL03908.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_072_362G1_scaffold_351_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


25666..26109
DNA (444bp) protein (148aa)
30S ribosomal protein S16 n=5 Tax=Bifidobacterium RepID=E3ENQ4_BIFBS
30S ribosomal protein S16
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_072_362G1_scaffold_351_24
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26112..26345
DNA (234bp) protein (78aa)
UPF0109 protein BBIF_0340 n=8 Tax=Bifidobacterium RepID=E3ENQ3_BIFBS
RNA-binding protein
UPF0109 protein BBCT_0186 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
L3_072_362G1_scaffold_351_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26342..26956
DNA (615bp) protein (205aa)
Ribosome maturation factor RimM n=3 Tax=Bifidobacterium RepID=E3ENQ2_BIFBS
rimM; 16S rRNA processing protein rimM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00055369}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_072_362G1_scaffold_351_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27218..28216
DNA (999bp) protein (333aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|SAAS:SAAS00014918}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|SAAS:SAAS00014917};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
tRNA (guanine-N(1)-)-methyltransferase n=2 Tax=Bifidobacterium bifidum RepID=E4V7U5_BIFBI
tRNA (guanine-N1)-methyltransferase
L3_072_362G1_scaffold_351_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28463..28915
DNA (453bp) protein (151aa)
Hsp20-family heat shock chaperone n=3 Tax=Bifidobacterium bifidum RepID=E3ENQ0_BIFBS
Hsp20-family heat shock chaperone
Hsp20-family heat shock chaperone {ECO:0000313|EMBL:ADO52542.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_072_362G1_scaffold_351_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29065..29667)
DNA (603bp) protein (201aa)
Nitroreductase family protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DL36_BIFBI
Oxidoreductase/nitroreductase {ECO:0000313|EMBL:KFI42413.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
nitroreductase domain
L3_072_362G1_scaffold_351_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29882..30544)
DNA (663bp) protein (221aa)
RNA methyltransferase, RsmD family n=3 Tax=Bifidobacterium bifidum RepID=E4V7U2_BIFBI
Methyltransferase {ECO:0000313|EMBL:KFI42412.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
putative methyl transferase
L3_072_362G1_scaffold_351_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30853..32490)
DNA (1638bp) protein (546aa)
Transporter, dicarboxylate/amino acid:cation Na+/H+ symporter family protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CCH6_BIFBI
Sodium/dicarboxylate symporter family protein {ECO:0000313|EMBL:KFI42411.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
sodium-dicarboxylate symporter
Displaying items 1-30 of 39 in total

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