ggKbase home page

L3_072_362G1_scaffold_354

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_362G1_scaffold_354_1
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

1..177
DNA (177bp) protein (59aa)
Phage protein n=1 Tax=Lactobacillus paracasei subsp. paracasei Lpp43 RepID=S2S9D9_LACPA
Phage protein {ECO:0000313|EMBL:EPC87002.1}; TaxID=1256212 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei Lpp43.;"
putative phage protein
L3_072_362G1_scaffold_354_2
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

572..904
DNA (333bp) protein (111aa)
Putative phage holin n=1 Tax=Lactobacillus paracasei subsp. paracasei Lpp14 RepID=S2Q069_LACPA
Putative phage holin {ECO:0000313|EMBL:EPC59262.1}; TaxID=1256204 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei Lpp14.;"
putative phage holin
L3_072_362G1_scaffold_354_3
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

949..2061
DNA (1113bp) protein (371aa)
Putative lysin protein {ECO:0000313|EMBL:EKQ10987.1}; EC=3.-.-.- {ECO:0000313|EMBL:EKQ10987.1};; EC=3.2.1.17 {ECO:0000313|EMBL:EKQ10987.1};; TaxID=1051653 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei A2-362.;"
Phage lysin, 1,4-beta-N-acetylmuramidase n=1 Tax=Lactobacillus paracasei subsp. paracasei Lpp120 RepID=S2N8I3_LACPA
putative phage lysin
L3_072_362G1_scaffold_354_4
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

2105..2329
DNA (225bp) protein (75aa)
Uncharacterized protein n=3 Tax=Lactobacillus rhamnosus RepID=G6AN93_LACRH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAN38113.1}; TaxID=1435038 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei NRIC 0644.;"
L3_072_362G1_scaffold_354_5
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(2399..2659)
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Lactobacillus paracasei subsp. paracasei Lpp14 RepID=S2Q3G7_LACPA
Uncharacterized protein {ECO:0000313|EMBL:EPC59260.1}; TaxID=1256204 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei Lpp14.;"
L3_072_362G1_scaffold_354_6
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

3623..3943
DNA (321bp) protein (107aa)
Transcriptional regulator, xre family n=1 Tax=Lactobacillus casei (strain ATCC 334) RepID=Q038U1_LACC3
XRE family transcriptional regulator
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EEN80268.1}; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
L3_072_362G1_scaffold_354_7
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

3986..5155
DNA (1170bp) protein (390aa)
Site-specific recombinase, phage integrase family n=1 Tax=Lactobacillus rhamnosus LMS2-1 RepID=C2JXD4_LACRH
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:EEN80267.1}; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
integrase
L3_072_362G1_scaffold_354_8
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

5547..6443
DNA (897bp) protein (299aa)
glycyl-tRNA synthetase alpha chain (EC:6.1.1.14)
Glycine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00254, ECO:0000256|SAAS:SAAS00104892}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00254, ECO:0000256|SAAS:SAAS00104898};; Glycyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00254}; TaxID=1256230 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. tolerans Lpl7.;"
Glycine--tRNA ligase alpha subunit n=9 Tax=Lactobacillus casei group RepID=C5F5B5_LACPA
L3_072_362G1_scaffold_354_9
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

6445..8514
DNA (2070bp) protein (690aa)
glycyl-tRNA synthetase beta chain (EC:6.1.1.14)
Glycine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00255, ECO:0000256|SAAS:SAAS00039777}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00255, ECO:0000256|SAAS:SAAS00039811};; Glycyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00255}; TaxID=537973 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei 8700:2.;"
Glycine--tRNA ligase beta subunit n=4 Tax=Lactobacillus casei group RepID=C5F5B6_LACPA
L3_072_362G1_scaffold_354_10
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

8707..10494
DNA (1788bp) protein (596aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=537973 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei 8700:2.;"
DNA primase n=4 Tax=Lactobacillus casei group RepID=C5F5B7_LACPA
DNA primase
L3_072_362G1_scaffold_354_11
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

10508..11776
DNA (1269bp) protein (423aa)
RNA polymerase sigma factor SigA n=44 Tax=Lactobacillus RepID=B3WEK4_LACCB
RNA polymerase sigma-70 subunit RpoD
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=537973 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei 8700:2.;"
L3_072_362G1_scaffold_354_12
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

11992..12702
DNA (711bp) protein (237aa)
SAM-dependent methyltransferase n=20 Tax=Lactobacillus casei group RepID=C5F5B9_LACPA
putative tRNA-m1A22 methylase
SAM-dependent methyltransferase {ECO:0000313|EMBL:EPC86395.1}; TaxID=1256212 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei Lpp43.;"
L3_072_362G1_scaffold_354_13
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

12689..13483
DNA (795bp) protein (265aa)
Putative GTP cyclohydrolase 1 type 2 {ECO:0000256|RuleBase:RU004385}; EC=3.5.4.16 {ECO:0000256|RuleBase:RU004385};; GTP cyclohydrolase I {ECO:0000256|RuleBase:RU004385}; TaxID=1051651 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei 21/1.;"
Putative GTP cyclohydrolase 1 type 2 n=4 Tax=Lactobacillus casei group RepID=C5F5C0_LACPA
hypothetical protein
L3_072_362G1_scaffold_354_14
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

13626..13814
DNA (189bp) protein (63aa)
4-oxalocrotonate tautomerase (EC:5.-.-.- 5.3.2.-)
Tautomerase {ECO:0000256|RuleBase:RU362032}; EC=5.3.2.- {ECO:0000256|RuleBase:RU362032};; TaxID=1378069 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei 5b.;"
4-oxalocrotonate tautomerase n=38 Tax=Lactobacillus casei group RepID=C5F5C1_LACPA
L3_072_362G1_scaffold_354_15
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

13866..14216
DNA (351bp) protein (117aa)
MIP18 family protein yitW n=51 Tax=Lactobacillus casei group RepID=K0N8S7_LACCA
Metal-sulfur cluster biosynthetic enzyme
Putative aromatic ring hydroxylating enzyme {ECO:0000313|EMBL:EKQ02650.1}; TaxID=1051651 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei 21/1.;"
L3_072_362G1_scaffold_354_16
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

14309..15052
DNA (744bp) protein (248aa)
SAM-dependent methyltransferase n=22 Tax=Lactobacillus casei group RepID=C5F5C3_LACPA
Hypothetical protein
SAM-dependent methyltransferase {ECO:0000313|EMBL:EPC59359.1}; TaxID=1256201 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei Lpp123.;"
L3_072_362G1_scaffold_354_17
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

15106..16062
DNA (957bp) protein (319aa)
Uncharacterized conserved membrane protein n=32 Tax=Lactobacillus casei group RepID=B3WEJ7_LACCB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EPC90747.1}; TaxID=1256213 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei Lpp49.;"
L3_072_362G1_scaffold_354_18
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

16049..17380
DNA (1332bp) protein (444aa)
tRNA and rRNA cytosine-C5-methylase n=3 Tax=Lactobacillus casei group RepID=C5F5C5_LACPA
tRNA and rRNA cytosine-C5-methylase
tRNA and rRNA cytosine-C5-methylase {ECO:0000313|EMBL:EEQ64888.1}; TaxID=537973 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei 8700:2.;"
L3_072_362G1_scaffold_354_19
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(17869..18903)
DNA (1035bp) protein (345aa)
FMN-dependent isopentenyl-diphosphate delta-isomerase (EC:1.-.-.- 5.3.3.2)
Isopentenyl-diphosphate delta-isomerase {ECO:0000256|HAMAP-Rule:MF_00354}; Short=IPP isomerase {ECO:0000256|HAMAP-Rule:MF_00354};; EC=5.3.3.2 {ECO:0000256|HAMAP-Rule:MF_00354};; Isopentenyl diphosphate:dimethylallyl diphosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00354}; Isopentenyl pyrophosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00354}; Type 2 isopentenyl diphosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00354}; TaxID=1051651 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei 21/1.;"
Isopentenyl-diphosphate delta-isomerase n=4 Tax=Lactobacillus casei group RepID=C5F5C6_LACPA
L3_072_362G1_scaffold_354_20
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(18869..19873)
DNA (1005bp) protein (335aa)
diphosphomevalonate decarboxylase (EC:4.1.1.33)
Diphosphomevalonate decarboxylase n=4 Tax=Lactobacillus casei group RepID=C5F5C7_LACPA
Diphosphomevalonate decarboxylase {ECO:0000313|EMBL:EEQ64890.1}; TaxID=537973 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei 8700:2.;"
L3_072_362G1_scaffold_354_21
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(19881..20816)
DNA (936bp) protein (312aa)
mevalonate kinase (EC:2.7.1.36)
Mevalonate kinase {ECO:0000313|EMBL:EKQ02644.1}; EC=2.7.1.36 {ECO:0000313|EMBL:EKQ02644.1};; TaxID=1051651 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei 21/1.;"
Mevalonate kinase n=4 Tax=Lactobacillus casei group RepID=C5F5C8_LACPA
L3_072_362G1_scaffold_354_22
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

21146..24685
DNA (3540bp) protein (1180aa)
ATP-dependent nuclease, subunit B (EC:3.1.11.5)
ATP-dependent helicase/deoxyribonuclease subunit B {ECO:0000256|HAMAP-Rule:MF_01453, ECO:0000256|SAAS:SAAS00044212}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01453, ECO:0000256|SAAS:SAAS00044217};; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_01453, ECO:0000256|SAAS:SAAS00044220};; ATP-dependent helicase/nuclease RexB {ECO:0000256|HAMAP-Rule:MF_01453}; TaxID=1051651 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei 21/1.;"
ATP-dependent helicase/deoxyribonuclease subunit B n=3 Tax=Lactobacillus casei group RepID=K6QEK7_LACCA
L3_072_362G1_scaffold_354_23
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

24682..28386
DNA (3705bp) protein (1235aa)
ATP-dependent helicase/nuclease subunit A {ECO:0000256|HAMAP-Rule:MF_01451, ECO:0000256|SAAS:SAAS00044589}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01451, ECO:0000256|SAAS:SAAS00274943};; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_01451, ECO:0000256|SAAS:SAAS00145970};; ATP-dependent helicase/nuclease AddA {ECO:0000256|HAMAP-Rule:MF_01451}; TaxID=1051651 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei 21/1.;"
ATP-dependent nuclease, subunit A (EC:3.1.11.5)
ATP-dependent helicase/nuclease subunit A n=3 Tax=Lactobacillus casei group RepID=K6Q5Q6_LACCA
L3_072_362G1_scaffold_354_24
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

28425..31211
DNA (2787bp) protein (929aa)
DinG family ATP-dependent helicase n=3 Tax=Lactobacillus casei group RepID=K6PZG2_LACCA
DinG family ATP-dependent helicase
DinG family ATP-dependent helicase {ECO:0000313|EMBL:EKQ02641.1}; TaxID=1051651 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei 21/1.;"
L3_072_362G1_scaffold_354_25
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

31640..32128
DNA (489bp) protein (163aa)
Uncharacterized protein n=49 Tax=Lactobacillus casei group RepID=C5F5D2_LACPA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKQ12052.1}; TaxID=1051653 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei A2-362.;"
L3_072_362G1_scaffold_354_26
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

32183..33358
DNA (1176bp) protein (392aa)
aspartate aminotransferase (EC:2.6.1.- 2.6.-.- 2.6.1.1)
Aspartate aminotransferase n=21 Tax=Lactobacillus casei group RepID=C5F5D3_LACPA
Aspartate aminotransferase {ECO:0000313|EMBL:ERN49992.1}; TaxID=1378069 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei 5b.;"
L3_072_362G1_scaffold_354_27
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

33389..34687
DNA (1299bp) protein (433aa)
asparaginyl-tRNA synthetase (EC:6.1.1.22)
Asparagine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453}; EC=6.1.1.22 {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453};; Asparaginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00534}; TaxID=1051661 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei UW4.;"
Asparagine--tRNA ligase n=7 Tax=Lactobacillus casei group RepID=C5F5D4_LACPA
L3_072_362G1_scaffold_354_28
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

34742..35365
DNA (624bp) protein (208aa)
DNA replication protein dnaD n=55 Tax=Lactobacillus casei group RepID=K0N5B1_LACCA
Chromosome replication initiation protein dnaD
Chromosome replication initiation protein {ECO:0000313|EMBL:EKQ12049.1}; TaxID=1051653 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei A2-362.;"
L3_072_362G1_scaffold_354_29
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

35401..36090
DNA (690bp) protein (230aa)
nth; endonuclease III (EC:4.2.99.18)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=1256221 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei Lpp22.;"
Endonuclease III n=18 Tax=Lactobacillus casei group RepID=C5F5D6_LACPA
L3_072_362G1_scaffold_354_30
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

36087..36548
DNA (462bp) protein (154aa)
dCMP deaminase (EC:3.-.-.- 3.5.4.12)
Uncharacterized protein n=47 Tax=Lactobacillus casei group RepID=K0N8R0_LACCA
CMP deaminase {ECO:0000313|EMBL:ERN49988.1}; TaxID=1378069 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei 5b.;"
Displaying items 1-30 of 38 in total

View Taxonomy