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L3_072_362G1_scaffold_371

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_362G1_scaffold_371_1
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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3..380
DNA (378bp) protein (126aa)
ispH; ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC:1.17.1.2)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 /; Bd1).;"
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=2 Tax=Bifidobacterium dentium RepID=D2Q599_BIFDB
L3_072_362G1_scaffold_371_2
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(395..901)
DNA (507bp) protein (169aa)
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase {ECO:0000256|PIRNR:PIRNR006181}; EC=4.2.-.- {ECO:0000256|PIRNR:PIRNR006181};; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase n=2 Tax=Bifidobacterium dentium RepID=E0Q5I4_9BIFI
YbaK / prolyl-tRNA synthetases associated domain
L3_072_362G1_scaffold_371_3
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1126..2181)
DNA (1056bp) protein (352aa)
gap; glyceraldehyde 3-phosphate dehydrogenase (EC:1.2.1.12)
Gap Glyceraldehyde 3-phosphate dehydrogenase {ECO:0000313|EMBL:ADB10112.1}; EC=1.2.1.12 {ECO:0000313|EMBL:ADB10112.1};; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 /; Bd1).;"
Gap Glyceraldehyde 3-phosphate dehydrogenase n=4 Tax=Bifidobacterium dentium RepID=D2Q597_BIFDB
L3_072_362G1_scaffold_371_4
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2343..3089)
DNA (747bp) protein (249aa)
Thiamine diphosphokinase {ECO:0000313|EMBL:EFM41910.1}; EC=2.7.6.2 {ECO:0000313|EMBL:EFM41910.1};; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
thiamin pyrophosphokinase (EC:2.7.6.2)
Thiamine diphosphokinase n=2 Tax=Bifidobacterium dentium RepID=E1N9E7_9BIFI
L3_072_362G1_scaffold_371_5
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3248..5134
DNA (1887bp) protein (629aa)
Asparagine synthase (Glutamine-hydrolyzing) {ECO:0000313|EMBL:EFM41911.1}; EC=6.3.5.4 {ECO:0000313|EMBL:EFM41911.1};; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
Asparagine synthetase n=2 Tax=Bifidobacterium dentium RepID=E0Q5I7_9BIFI
asnH; asparagine synthetase
L3_072_362G1_scaffold_371_6
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5390..6088
DNA (699bp) protein (233aa)
Translation initiation factor IF-3 n=1 Tax=Bifidobacterium dentium ATCC 27678 RepID=B1S7M1_9BIFI
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium JCM 1195 = DSM 20436.;"
translation initiation factor IF-3
L3_072_362G1_scaffold_371_7
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


6107..6301
DNA (195bp) protein (65aa)
50S ribosomal protein L35 n=4 Tax=Bifidobacterium dentium RepID=D2Q593_BIFDB
rpmI; 50S ribosomal protein
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
L3_072_362G1_scaffold_371_8
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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6354..6737
DNA (384bp) protein (128aa)
50S ribosomal protein L20 n=4 Tax=Bifidobacterium dentium RepID=D2Q592_BIFDB
rplT; 50S ribosomal protein L20P
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
L3_072_362G1_scaffold_371_9
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6845..7801
DNA (957bp) protein (319aa)
Tyrosine recombinase XerD n=2 Tax=Bifidobacterium dentium RepID=D2Q591_BIFDB
Tyrosine recombinase XerD {ECO:0000256|HAMAP-Rule:MF_01807}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
integrase/recombinase
L3_072_362G1_scaffold_371_10
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7897..8736
DNA (840bp) protein (280aa)
ParA1 Chromosome partitioning protein parA n=4 Tax=Bifidobacterium dentium RepID=D2Q590_BIFDB
parA1; chromosome partitioning protein ParA
Bifidobacterium dentium JCM 1195 = DSM 20436 DNA, complete genome {ECO:0000313|EMBL:BAQ27426.1}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium JCM 1195 = DSM 20436.;"
L3_072_362G1_scaffold_371_11
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8866..9663
DNA (798bp) protein (266aa)
phosphohydrolase (EC:3.6.1.13)
Hydrolase, NUDIX family n=2 Tax=Bifidobacterium dentium RepID=E0Q5J3_9BIFI
NUDIX domain protein {ECO:0000313|EMBL:ETO96867.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
L3_072_362G1_scaffold_371_12
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9707..11062
DNA (1356bp) protein (452aa)
Transporter, MFS superfamily n=4 Tax=Bifidobacterium dentium RepID=D2Q588_BIFDB
MFS superfamily transporter
Bifidobacterium dentium JCM 1195 = DSM 20436 DNA, complete genome {ECO:0000313|EMBL:BAQ27424.1}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium JCM 1195 = DSM 20436.;"
L3_072_362G1_scaffold_371_13
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11242..13170
DNA (1929bp) protein (643aa)
GTP-binding protein TypA n=3 Tax=Bifidobacterium dentium RepID=B1S7N0_9BIFI
Bifidobacterium dentium JCM 1195 = DSM 20436 DNA, complete genome {ECO:0000313|EMBL:BAQ27421.1}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium JCM 1195 = DSM 20436.;"
GTP-binding protein TypA
L3_072_362G1_scaffold_371_14
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13283..13756
DNA (474bp) protein (158aa)
Alcohol dehydrogenase, class IV n=4 Tax=Bifidobacterium dentium RepID=D2Q584_BIFDB
alcohol dehydrogenase, class IV
Alcohol dehydrogenase, class IV {ECO:0000313|EMBL:ADB10099.1}; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 /; Bd1).;"
L3_072_362G1_scaffold_371_15
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13821..14801
DNA (981bp) protein (327aa)
pheA; pheA Prephenate dehydratase (EC:5.4.99.5)
PheA Prephenate dehydratase n=2 Tax=Bifidobacterium dentium RepID=D2Q583_BIFDB
Bifidobacterium dentium JCM 1195 = DSM 20436 DNA, complete genome {ECO:0000313|EMBL:BAQ27419.1}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium JCM 1195 = DSM 20436.;"
L3_072_362G1_scaffold_371_16
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14795..15853
DNA (1059bp) protein (353aa)
tyrA2; prephenate dehydrogenase (EC:1.3.1.43)
TyrA2 Prephenate dehydrogenase {ECO:0000313|EMBL:ADB10097.1}; EC=1.3.1.43 {ECO:0000313|EMBL:ADB10097.1};; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 /; Bd1).;"
TyrA2 Prephenate dehydrogenase n=2 Tax=Bifidobacterium dentium RepID=D2Q582_BIFDB
L3_072_362G1_scaffold_371_17
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15884..16141)
DNA (258bp) protein (86aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=B1S7N4_9BIFI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB10096.1}; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 /; Bd1).;"
L3_072_362G1_scaffold_371_18
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16181..19027)
DNA (2847bp) protein (949aa)
Permease protein of ABC transporter system n=1 Tax=Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 / Bd1) RepID=D2Q580_BIFDB
MacB-like periplasmic core domain protein {ECO:0000313|EMBL:ETO96211.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
ABC transporter permease
L3_072_362G1_scaffold_371_19
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19024..19842)
DNA (819bp) protein (273aa)
ABC transporter ATP-binding protein (EC:3.6.3.30)
ABC transporter, ATP-binding protein n=2 Tax=Bifidobacterium dentium RepID=E0Q5K1_9BIFI
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ETO96270.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
L3_072_362G1_scaffold_371_20
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19946..20866
DNA (921bp) protein (307aa)
Tyrosine recombinase XerC n=4 Tax=Bifidobacterium dentium RepID=D2Q578_BIFDB
integrase/recombinase
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 /; Bd1).;"
L3_072_362G1_scaffold_371_21
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20989..22623
DNA (1635bp) protein (545aa)
ABC transporter, substrate-binding protein, family 5 n=1 Tax=Bifidobacterium dentium ATCC 27678 RepID=B1S7Z5_9BIFI
ABC transporter, substrate-binding protein, family 5 {ECO:0000313|EMBL:ETO96343.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
oppA2; oligopeptide-binding protein OppA
L3_072_362G1_scaffold_371_22
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22858..24501
DNA (1644bp) protein (548aa)
OppA2 Oligopeptide-binding protein oppA n=4 Tax=Bifidobacterium dentium RepID=D2Q576_BIFDB
oppA2; oligopeptide-binding protein OppA
Bifidobacterium dentium JCM 1195 = DSM 20436 DNA, complete genome {ECO:0000313|EMBL:BAQ27412.1}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium JCM 1195 = DSM 20436.;"
L3_072_362G1_scaffold_371_23
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24825..25751
DNA (927bp) protein (309aa)
OppB2 Oligopeptide transport system permease protein oppB n=4 Tax=Bifidobacterium dentium RepID=D2Q575_BIFDB
oppB2; peptide ABC transporter permease
ABC transporter, permease protein {ECO:0000313|EMBL:EFM41929.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
L3_072_362G1_scaffold_371_24
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25769..26737
DNA (969bp) protein (323aa)
OppC1 Oligopeptide transport system permease protein oppC n=2 Tax=Bifidobacterium dentium RepID=D2Q574_BIFDB
oppC1; peptide ABC transporter permease
ABC transporter, permease protein {ECO:0000313|EMBL:ETO96202.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
L3_072_362G1_scaffold_371_25
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26758..28767
DNA (2010bp) protein (670aa)
oppD2; peptide ABC transporter ATP-binding protein (EC:3.6.3.30)
OppD2 Oligopeptide transport ATP-binding protein oppD n=4 Tax=Bifidobacterium dentium RepID=D2Q573_BIFDB
Putative phosphonate C-P lyase system protein PhnK {ECO:0000313|EMBL:EFM41931.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
L3_072_362G1_scaffold_371_26
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28996..29856
DNA (861bp) protein (287aa)
xth; exodeoxyribonuclease III (EC:4.2.99.18)
Putative exodeoxyribonuclease III n=3 Tax=Bifidobacterium dentium RepID=B1S800_9BIFI
Putative exodeoxyribonuclease III {ECO:0000313|EMBL:ETO96185.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
L3_072_362G1_scaffold_371_27
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29953..30774
DNA (822bp) protein (274aa)
Uncharacterized protein n=4 Tax=Bifidobacterium dentium RepID=B1S801_9BIFI
hypothetical protein
PF12502 family protein {ECO:0000313|EMBL:ETO96224.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
L3_072_362G1_scaffold_371_28
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30797..31525
DNA (729bp) protein (243aa)
ABC-type Mn2+/Zn2+ transport systems, permease components n=2 Tax=Bifidobacterium dentium RepID=D2Q570_BIFDB
Mn2+/Zn2+ ABC transporter permease
ABC-type Mn2+/Zn2+ transport systems, permease components {ECO:0000313|EMBL:ADB10085.1}; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 /; Bd1).;"
L3_072_362G1_scaffold_371_29
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31525..32790
DNA (1266bp) protein (422aa)
tRNA (uracil-5-) -methyltransferase (EC:2.1.1.35)
tRNA (Uracil-5-)-methyltransferase n=2 Tax=Bifidobacterium dentium RepID=D2Q569_BIFDB
Bifidobacterium dentium JCM 1195 = DSM 20436 DNA, complete genome {ECO:0000313|EMBL:BAQ27405.1}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium JCM 1195 = DSM 20436.;"
L3_072_362G1_scaffold_371_30
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32817..33362
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Bifidobacterium dentium ATCC 27679 RepID=E0Q5L2_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:EFM41936.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
sugar ABC transporter substrate-binding protein
Displaying items 1-30 of 35 in total

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