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L3_072_362G1_scaffold_378

Search features with annotation key words

Displaying items 1-30 of 110 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_362G1_scaffold_378_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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460..2766
DNA (2307bp) protein (769aa)
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00172, ECO:0000256|SAAS:SAAS00049969}; EC=2.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00172};; Cobalamin-independent methionine synthase {ECO:0000256|HAMAP-Rule:MF_00172}; Methionine synthase, vitamin-B12 independent isozyme {ECO:0000256|HAMAP-Rule:MF_00172}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
metE; 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase (EC:2.1.1.14)
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DN85_BIFBI
L3_072_362G1_scaffold_378_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2909..3757
DNA (849bp) protein (283aa)
metF; methylenetetrahydrofolate reductase (EC:1.5.1.20)
Methylenetetrahydrofolate reductase {ECO:0000256|RuleBase:RU003862}; EC=1.5.1.20 {ECO:0000256|RuleBase:RU003862};; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Methylenetetrahydrofolate reductase n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P1P3_BIFBP
L3_072_362G1_scaffold_378_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3874..4206)
DNA (333bp) protein (111aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EM89_BIFBS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO53096.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_072_362G1_scaffold_378_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4288..7386
DNA (3099bp) protein (1033aa)
Glutamate-ammonia-ligase adenylyltransferase {ECO:0000256|SAAS:SAAS00086160}; EC=2.7.7.42 {ECO:0000256|SAAS:SAAS00086164};; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Glutamate-ammonia-ligase adenylyltransferase n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EM90_BIFBS
glnE; glutamate-ammonia-ligase adenylyltransferase
L3_072_362G1_scaffold_378_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7494..8489
DNA (996bp) protein (332aa)
Aspartate carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000256|HAMAP-Rule:MF_00001};; Aspartate transcarbamylase {ECO:0000256|HAMAP-Rule:MF_00001}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Aspartate carbamoyltransferase n=2 Tax=Bifidobacterium bifidum RepID=U2DTD5_BIFBI
pyrB; aspartate carbamoyltransferase
L3_072_362G1_scaffold_378_6
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8489..8908
DNA (420bp) protein (140aa)
Aspartate carbamoyltransferase regulatory subunit 1 n=8 Tax=Bifidobacterium RepID=E3EM92_BIFBS
pyrI; aspartate carbamoyl transferase regulatory subunit
Aspartate carbamoyltransferase regulatory subunit 1 {ECO:0000313|EMBL:CDB22908.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_072_362G1_scaffold_378_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9017..10441
DNA (1425bp) protein (475aa)
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00220, ECO:0000256|SAAS:SAAS00252556}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00220};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00220};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
Dihydroorotase n=3 Tax=Bifidobacterium bifidum RepID=E4V9N4_BIFBI
pyrC; dihydroorotase
L3_072_362G1_scaffold_378_8
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10512..11477
DNA (966bp) protein (322aa)
Orotidine 5'-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032256}; EC=4.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032220};; OMP decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
Orotidine 5'-phosphate decarboxylase n=5 Tax=Bifidobacterium RepID=E4V9N5_BIFBI
pyrF1; Orotidine 5'-phosphate decarboxylase
L3_072_362G1_scaffold_378_9
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11610..12440
DNA (831bp) protein (277aa)
Dihydroorotate dehydrogenase electron transfer subunit n=7 Tax=Bifidobacterium RepID=I3WHV6_BIFBI
pyrK; dihydroorotate dehydrogenase electron transfer subunit
Dihydroorotate dehydrogenase electron transfer subunit {ECO:0000313|EMBL:CCY94938.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
L3_072_362G1_scaffold_378_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12443..13390
DNA (948bp) protein (316aa)
pyrD; dihydroorotate dehydrogenase, catalytic subunit pyrD (EC:1.3.98.1)
Dihydroorotate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00224}; Short=DHOD {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHODase {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHOdehase {ECO:0000256|HAMAP-Rule:MF_00224};; EC=1.3.-.- {ECO:0000256|HAMAP-Rule:MF_00224};; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
Dihydroorotate dehydrogenase n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NWU4_BIFBP
L3_072_362G1_scaffold_378_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13412..14110
DNA (699bp) protein (233aa)
pyrE; orotate phosphoribosyltransferase PyrE (EC:2.4.2.10)
Orotate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216328}; Short=OPRT {ECO:0000256|HAMAP-Rule:MF_01208};; Short=OPRTase {ECO:0000256|HAMAP-Rule:MF_01208};; EC=2.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216337};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Orotate phosphoribosyltransferase n=2 Tax=Bifidobacterium bifidum RepID=E4NWU5_BIFBP
L3_072_362G1_scaffold_378_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14261..14404
DNA (144bp) protein (48aa)
Transcriptional regulator, MerR family n=4 Tax=Bifidobacterium bifidum RepID=E4NWU6_BIFBP
MerR family transcriptional regulator
Putative transcriptional regulator, MerR family {ECO:0000313|EMBL:ADO53105.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_072_362G1_scaffold_378_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14474..15517
DNA (1044bp) protein (348aa)
Adh Alcohol dehydrogenase {ECO:0000313|EMBL:KFI43000.1}; EC=1.1.1.284 {ECO:0000313|EMBL:KFI43000.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
adh; alcohol dehydrogenase (EC:1.1.1.284)
GroES-like protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2BXU3_BIFBI
L3_072_362G1_scaffold_378_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15707..16921)
DNA (1215bp) protein (405aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WHW1_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL04474.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_072_362G1_scaffold_378_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17453..17785
DNA (333bp) protein (111aa)
Serine/threonine protein kinase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WHW3_BIFBI
serine/threonine protein kinase
Serine/threonine protein kinase {ECO:0000313|EMBL:AFL04476.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_072_362G1_scaffold_378_16
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18067..20574
DNA (2508bp) protein (836aa)
uvrA; excinuclease ABC subunit A (EC:3.6.3.28)
UvrA Excinuclease ABC subunit A n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GLJ0_9BIFI
UvrA Excinuclease ABC subunit A {ECO:0000313|EMBL:CDB22116.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_072_362G1_scaffold_378_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20648..22006
DNA (1359bp) protein (453aa)
Na+ driven multidrug efflux pump n=2 Tax=Bifidobacterium RepID=R6GCN9_9BIFI
Na+ driven multidrug efflux pump {ECO:0000313|EMBL:KFI43005.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Na+ driven multidrug efflux pump
L3_072_362G1_scaffold_378_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22159..22869
DNA (711bp) protein (237aa)
fabG; 3-oxoacyl-[acyl-carrier-protein] reductase (EC:1.1.1.100)
3-oxoacyl-[acyl-carrier-protein] reductase n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2MSY0_BIFBI
3-oxoacyl-[acyl-carrier-protein] reductase {ECO:0000313|EMBL:EKF15203.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_072_362G1_scaffold_378_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22872..23588
DNA (717bp) protein (239aa)
Endonuclease III {ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|PIRNR:PIRNR001435};; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
DNA-(apurinic or apyrimidinic site) lyase (EC:4.2.99.18)
Endonuclease III n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2MD10_BIFBI
L3_072_362G1_scaffold_378_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23635..24159
DNA (525bp) protein (175aa)
PadR family transcriptional regulator n=2 Tax=Bifidobacterium bifidum RepID=K2IPM7_BIFBI
PadR family transcriptional regulator {ECO:0000313|EMBL:EKE50685.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
PadR family transcriptional regulator
L3_072_362G1_scaffold_378_21
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24184..25161
DNA (978bp) protein (326aa)
Putative integral membrane permease protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GLI7_9BIFI
Putative integral membrane permease protein {ECO:0000313|EMBL:CDB22111.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
putative integral membrane permease protein
L3_072_362G1_scaffold_378_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25187..25507)
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HTE9_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKE50683.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
hypothetical protein
L3_072_362G1_scaffold_378_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25660..26805)
DNA (1146bp) protein (382aa)
HipA domain protein n=5 Tax=Bifidobacterium bifidum RepID=E3EP10_BIFBS
HipA domain-containing protein
HipA domain protein {ECO:0000313|EMBL:ERI82950.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ98163.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_072_362G1_scaffold_378_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26802..27101)
DNA (300bp) protein (100aa)
Transcriptional regulator n=4 Tax=Bifidobacterium RepID=I3WHX3_BIFBI
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EFR50344.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
transcriptional regulator
L3_072_362G1_scaffold_378_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27123..27401
DNA (279bp) protein (93aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EP12_BIFBS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO53119.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_072_362G1_scaffold_378_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27398..27604
DNA (207bp) protein (69aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EP13_BIFBS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO53120.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_072_362G1_scaffold_378_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27714..28280
DNA (567bp) protein (189aa)
TetR family transcriptional regulator n=5 Tax=Bifidobacterium RepID=E3EP14_BIFBS
ybjK; putative HTH-type transcriptional regulator
Putative HTH-type transcriptional regulator {ECO:0000313|EMBL:EKE50678.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L3_072_362G1_scaffold_378_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28417..28917
DNA (501bp) protein (167aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EP15_BIFBS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO53122.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_072_362G1_scaffold_378_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28971..29903)
DNA (933bp) protein (311aa)
Transcriptional regulator, LysR family n=8 Tax=Bifidobacterium RepID=E3EP16_BIFBS
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:KFI43017.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_072_362G1_scaffold_378_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30111..30740)
DNA (630bp) protein (210aa)
HAD-superfamily hydrolase, subfamily IA, variant 3 n=3 Tax=Bifidobacterium bifidum RepID=E3EP17_BIFBS
haloacid dehalogenase
HAD hydrolase, family IA, variant 3 {ECO:0000313|EMBL:ERI82957.1}; Putative hydrolase {ECO:0000313|EMBL:BAQ98170.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
Displaying items 1-30 of 110 in total

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