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L3_072_362G1_scaffold_411

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_362G1_scaffold_411_1
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(545..3031)
DNA (2487bp) protein (829aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
gyrA1; DNA gyrase subunit A (EC:5.99.1.3)
UPI0003D62B09 related cluster n=1 Tax=unknown RepID=UPI0003D62B09
L3_072_362G1_scaffold_411_2
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3057..4964)
DNA (1908bp) protein (636aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
DNA gyrase subunit B n=1 Tax=Clostridium beijerinckii RepID=UPI0002F0005B
gyrB; DNA gyrase subunit B
L3_072_362G1_scaffold_411_3
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4998..5249)
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MKN4_CLOSA
Uncharacterized protein {ECO:0000313|EMBL:AJH02292.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
hypothetical protein
L3_072_362G1_scaffold_411_4
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5263..6348)
DNA (1086bp) protein (362aa)
DNA replication and repair protein RecF n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MNT2_CLOSA
recF; DNA replication and repair protein RecF
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_072_362G1_scaffold_411_5
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6411..6617)
DNA (207bp) protein (69aa)
S4 domain protein YaaA n=4 Tax=Clostridium butyricum RepID=B1QSM6_CLOBU
RNA-binding protein S4 {ECO:0000313|EMBL:KHD13891.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
yaaA; S4 domain protein YaaA
L3_072_362G1_scaffold_411_6
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6654..7754)
DNA (1101bp) protein (367aa)
dnaN; DNA polymerase III subunit beta DnaN (EC:2.7.7.7)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
DNA polymerase III subunit beta DnaN n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MKF1_CLOSA
L3_072_362G1_scaffold_411_7
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8015..9364)
DNA (1350bp) protein (450aa)
Chromosomal replication initiator protein DnaA n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TY26_9CLOT
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377, ECO:0000256|SAAS:SAAS00009621}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
dnaA; chromosomal replication initiator protein DnaA
L3_072_362G1_scaffold_411_8
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


9869..10003
DNA (135bp) protein (45aa)
50S ribosomal protein L34 n=4 Tax=Clostridium botulinum RepID=RL34_CLOBA
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
rpmH; 50S ribosomal protein L34
L3_072_362G1_scaffold_411_9
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10065..10451
DNA (387bp) protein (129aa)
rnpA; ribonuclease P protein component RnpA (EC:3.1.26.5)
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rule:MF_00227};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143815};; Protein C5 {ECO:0000256|HAMAP-Rule:MF_00227}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Ribonuclease P protein component RnpA n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MY17_CLOSA
L3_072_362G1_scaffold_411_10
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10414..10623
DNA (210bp) protein (70aa)
Putative membrane protein insertion efficiency factor n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6U827_9CLOT
Putative membrane protein insertion efficiency factor {ECO:0000256|HAMAP-Rule:MF_00386, ECO:0000256|SAAS:SAAS00100919}; Flags: Precursor;; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
hypothetical protein
L3_072_362G1_scaffold_411_11
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10646..11422
DNA (777bp) protein (259aa)
Membrane protein insertase, YidC/Oxa1 family n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6U721_9CLOT
Membrane protein insertase, YidC/Oxa1 family {ECO:0000313|EMBL:EKQ57781.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
membrane protein insertase, YidC/Oxa1 family
L3_072_362G1_scaffold_411_12
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11462..12085
DNA (624bp) protein (208aa)
Putative RNA-binding protein n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TY23_9CLOT
jag; protein Jag
Putative RNA-binding protein {ECO:0000313|EMBL:EKQ57780.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
L3_072_362G1_scaffold_411_13
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12234..13616
DNA (1383bp) protein (461aa)
mnmE; tRNA modification GTPase MnmE (EC:3.6.-.-)
tRNA modification GTPase MnmE {ECO:0000256|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000256|HAMAP-Rule:MF_00379};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
tRNA modification GTPase MnmE n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5N0N0_CLOSA
L3_072_362G1_scaffold_411_14
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13629..15515
DNA (1887bp) protein (629aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=3 Tax=Clostridium butyricum RepID=B1QSN5_CLOBU
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000256|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000256|HAMAP-Rule:MF_00129}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
L3_072_362G1_scaffold_411_15
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15537..16256
DNA (720bp) protein (240aa)
rsmG; ribosomal RNA small subunit methyltransferase G (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00277524};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Ribosomal RNA small subunit methyltransferase G n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MXH0_CLOSA
L3_072_362G1_scaffold_411_16
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16361..17143
DNA (783bp) protein (261aa)
ParB-like partition protein n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1N870_9CLOT
ParB-like partition protein
ParB-like partition protein {ECO:0000313|EMBL:AGF59552.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
L3_072_362G1_scaffold_411_17
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17284..18045
DNA (762bp) protein (254aa)
ATPase involved in chromosome partitioning n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TY20_9CLOT
ATPase involved in chromosome partitioning {ECO:0000313|EMBL:EKQ57775.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
cobyrinic acid a,c-diamide synthase
L3_072_362G1_scaffold_411_18
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18059..18961
DNA (903bp) protein (301aa)
Stage 0 sporulation protein J n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5N0M7_CLOSA
spo0J; stage 0 sporulation protein J
Stage 0 sporulation protein J {ECO:0000313|EMBL:AGX45466.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_072_362G1_scaffold_411_19
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18949..19464
DNA (516bp) protein (172aa)
Uncharacterized protein n=4 Tax=Clostridium butyricum RepID=B1QSP0_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ30287.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
hypothetical protein
L3_072_362G1_scaffold_411_20
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19551..20129)
DNA (579bp) protein (193aa)
Putative sporulation protein YyaC n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MXG5_CLOSA
yyaC3; putative sporulation protein YyaC
Putative sporulation protein YyaC {ECO:0000313|EMBL:AGX45464.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_072_362G1_scaffold_411_21
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20181..21341)
DNA (1161bp) protein (387aa)
Cysteine desulfurase family protein n=1 Tax=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) RepID=A6M3L7_CLOB8
cysteine desulfurase family protein
Cysteine desulfurase family protein {ECO:0000313|EMBL:ABR37197.1}; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium; acetobutylicum).;"
L3_072_362G1_scaffold_411_22
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21706..21945
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5N0M4_CLOSA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGX45461.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_072_362G1_scaffold_411_23
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21962..22843
DNA (882bp) protein (294aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0A1E5_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ30293.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
mechanosensitive ion channel family protein
L3_072_362G1_scaffold_411_24
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22868..23062
DNA (195bp) protein (65aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=A6M3L3_CLOB8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABR37193.1}; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium; acetobutylicum).;"
L3_072_362G1_scaffold_411_25
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


23161..23451
DNA (291bp) protein (97aa)
30S ribosomal protein S6 n=4 Tax=Clostridium butyricum RepID=B1QSP7_CLOBU
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
rpsF; 30S ribosomal protein S6
L3_072_362G1_scaffold_411_26
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23466..23918
DNA (453bp) protein (151aa)
Single-stranded DNA-binding protein n=4 Tax=Clostridium butyricum RepID=B1QSP8_CLOBU
single-strand binding protein
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|PIRNR:PIRNR002070}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
L3_072_362G1_scaffold_411_27
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


23944..24201
DNA (258bp) protein (86aa)
30S ribosomal protein S18 n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5N0M0_CLOSA
rpsR; 30S ribosomal protein S18
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
L3_072_362G1_scaffold_411_28
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24357..24677
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TCV2_9CLOT
MazG-like family
Uncharacterized protein {ECO:0000313|EMBL:EKQ57763.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
L3_072_362G1_scaffold_411_29
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24704..26641
DNA (1938bp) protein (646aa)
Putative phosphoesterase n=1 Tax=Clostridium sp. DL-VIII RepID=G7MBI9_9CLOT
yybT; protein YybT
Protein YybT {ECO:0000313|EMBL:AGX45454.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_072_362G1_scaffold_411_30
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


26644..27090
DNA (447bp) protein (149aa)
50S ribosomal protein L9 n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6U711_9CLOT
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
rplI; 50S ribosomal protein L9
Displaying items 1-30 of 40 in total

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