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L3_072_362G1_scaffold_424

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_362G1_scaffold_424_1
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(229..822)
DNA (594bp) protein (198aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=B1S5Q8_9BIFI
PF13828 domain protein {ECO:0000313|EMBL:ETO98279.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
hypothetical protein
L3_072_362G1_scaffold_424_2
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(988..2067)
DNA (1080bp) protein (360aa)
UDP-glucose 4-epimerase n=1 Tax=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC 11814 / E194a) RepID=A1A0D9_BIFAA
UDP-glucose 4-epimerase
UDP-glucose 4-epimerase {ECO:0000313|EMBL:AII75823.1}; TaxID=1680 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis.;"
L3_072_362G1_scaffold_424_3
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2193..3038
DNA (846bp) protein (282aa)
tRNA (guanine-N(7)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; EC=2.1.1.33 {ECO:0000256|HAMAP-Rule:MF_01057};; tRNA (guanine(46)-N(7))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; tRNA(m7G46)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
tRNA (m(7)G46) methyltransferase (EC:2.1.1.33)
tRNA (guanine-N(7)-)-methyltransferase n=2 Tax=Bifidobacterium dentium RepID=D2Q8R8_BIFDB
L3_072_362G1_scaffold_424_4
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3660..6959
DNA (3300bp) protein (1100aa)
Polymorphic outer membrane protein repeat (3 repeats) n=1 Tax=Bifidobacterium dentium ATCC 27679 RepID=E0Q8E1_9BIFI
Cna protein B-type domain protein {ECO:0000313|EMBL:ETO98316.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
hypothetical protein
L3_072_362G1_scaffold_424_5
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7068..8861
DNA (1794bp) protein (598aa)
LPXTG-motif cell wall anchor domain protein n=2 Tax=Bifidobacterium dentium RepID=E0Q8E0_9BIFI
Fimbrial isopeptide formation D2 domain protein {ECO:0000313|EMBL:ETO98128.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
hypothetical protein
L3_072_362G1_scaffold_424_6
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8989..10032
DNA (1044bp) protein (348aa)
Sortase n=2 Tax=Bifidobacterium dentium RepID=D2Q8S1_BIFDB
sortase
Bifidobacterium dentium JCM 1195 = DSM 20436 DNA, complete genome {ECO:0000313|EMBL:BAQ26506.1}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium JCM 1195 = DSM 20436.;"
L3_072_362G1_scaffold_424_7
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10042..10473
DNA (432bp) protein (144aa)
Uncharacterized protein n=4 Tax=Bifidobacterium dentium RepID=B1S5Q0_9BIFI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB09208.1}; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 /; Bd1).;"
L3_072_362G1_scaffold_424_8
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10670..11821
DNA (1152bp) protein (384aa)
fucO; Lactaldehyde reductase (EC:1.2.1.10)
FucO Lactaldehyde reductase {ECO:0000313|EMBL:ADB09209.1}; EC=1.2.1.10 {ECO:0000313|EMBL:ADB09209.1};; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 /; Bd1).;"
FucO Lactaldehyde reductase n=2 Tax=Bifidobacterium dentium RepID=D2Q8S3_BIFDB
L3_072_362G1_scaffold_424_9
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12020..12943)
DNA (924bp) protein (308aa)
glycosyltransferase (EC:2.4.1.212)
Glycosyltransferase, group 2 family protein {ECO:0000313|EMBL:EFM41078.1}; EC=2.4.-.- {ECO:0000313|EMBL:EFM41078.1};; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
Glycosyltransferase, group 2 family protein n=4 Tax=Bifidobacterium dentium RepID=E1ND58_9BIFI
L3_072_362G1_scaffold_424_10
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13000..14499
DNA (1500bp) protein (500aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=B1S5P6_9BIFI
PF01594 domain protein {ECO:0000313|EMBL:ETO98108.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
hypothetical protein
L3_072_362G1_scaffold_424_11
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14500..15723
DNA (1224bp) protein (408aa)
Glycosyltransferase, group 2 family protein {ECO:0000313|EMBL:EFM41076.1}; EC=2.4.-.- {ECO:0000313|EMBL:EFM41076.1};; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
N-acetylglucosaminyltransferase n=4 Tax=Bifidobacterium dentium RepID=D2Q8S6_BIFDB
N-acetylglucosaminyltransferase
L3_072_362G1_scaffold_424_12
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15871..16689
DNA (819bp) protein (273aa)
ABC transporter ATP-binding protein (EC:3.6.3.20)
ATP-binding protein of ABC transporter system {ECO:0000313|EMBL:ADB09213.1}; EC=3.6.3.20 {ECO:0000313|EMBL:ADB09213.1};; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 /; Bd1).;"
ATP-binding protein of ABC transporter system n=3 Tax=Bifidobacterium dentium RepID=D2Q8S7_BIFDB
L3_072_362G1_scaffold_424_13
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16686..18314
DNA (1629bp) protein (543aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=E0Q8D2_9BIFI
Putative membrane protein {ECO:0000313|EMBL:ETO98297.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
hypothetical protein
L3_072_362G1_scaffold_424_14
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18350..19795
DNA (1446bp) protein (482aa)
Conserved hypothetical secreted protein with D-Ala-D-Ala carboxypeptidase 3 (S13) domain n=1 Tax=Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 / Bd1) RepID=D2Q8S9_BIFDB
D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase-like protein {ECO:0000313|EMBL:ETO98058.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
hypothetical protein
L3_072_362G1_scaffold_424_15
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19802..20902
DNA (1101bp) protein (367aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
lysidine synthetase (EC:2.4.2.8)
tRNA(Ile)-lysidine synthase n=1 Tax=Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 / Bd1) RepID=D2Q8T0_BIFDB
L3_072_362G1_scaffold_424_16
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20880..21452
DNA (573bp) protein (191aa)
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:EFM41071.1}; EC=2.4.2.8 {ECO:0000313|EMBL:EFM41071.1};; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
hprT; hypoxanthine-guanine phosphoribosyltransferase (EC:2.4.2.8)
Hypoxanthine phosphoribosyltransferase n=3 Tax=Bifidobacterium dentium RepID=B1S5P0_9BIFI
L3_072_362G1_scaffold_424_17
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21449..23515
DNA (2067bp) protein (689aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
ftsH; cell division protein (EC:3.6.4.6)
ATP-dependent zinc metalloprotease FtsH n=4 Tax=Bifidobacterium dentium RepID=D2Q8T2_BIFDB
L3_072_362G1_scaffold_424_18
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23515..24153
DNA (639bp) protein (213aa)
GTP cyclohydrolase 1 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021192}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021179};; GTP cyclohydrolase I {ECO:0000256|HAMAP-Rule:MF_00223}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
GTP cyclohydrolase I (EC:3.5.4.16)
GTP cyclohydrolase 1 n=2 Tax=Bifidobacterium dentium RepID=E0Q8C7_9BIFI
L3_072_362G1_scaffold_424_19
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24188..25066
DNA (879bp) protein (293aa)
folP; dihydropteroate synthase (EC:4.1.2.25)
Dihydropteroate synthase {ECO:0000256|RuleBase:RU361205}; Short=DHPS {ECO:0000256|RuleBase:RU361205};; EC=2.5.1.15 {ECO:0000256|RuleBase:RU361205};; Dihydropteroate pyrophosphorylase {ECO:0000256|RuleBase:RU361205}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium JCM 1195 = DSM 20436.;"
FolP Dihydropteroate synthase n=2 Tax=Bifidobacterium dentium RepID=D2Q8T4_BIFDB
L3_072_362G1_scaffold_424_20
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25090..26571
DNA (1482bp) protein (494aa)
Dihydroneopterin aldolase / 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase / 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase multi-domain protein {ECO:0000313|EMBL:ETO98199.1}; EC=2.7.6.3 {ECO:0000313|EMBL:ETO98199.1};; EC=4.1.2.25 {ECO:0000313|EMBL:ETO98199.1};; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
dihydroneopterin aldolase (EC:2.5.1.15)
Dihydroneopterin aldolase n=2 Tax=Bifidobacterium dentium RepID=D2Q8T5_BIFDB
L3_072_362G1_scaffold_424_21
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26568..27122
DNA (555bp) protein (185aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=B1S5N5_9BIFI
PF11377 family protein {ECO:0000313|EMBL:ETO98107.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
hypothetical protein
L3_072_362G1_scaffold_424_22
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27159..28070)
DNA (912bp) protein (304aa)
tesB; tesB Acyl-CoA thioesterase (EC:3.1.2.27)
TesB Acyl-CoA thioesterase {ECO:0000313|EMBL:ADB09223.1}; EC=3.1.2.27 {ECO:0000313|EMBL:ADB09223.1};; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 /; Bd1).;"
TesB Acyl-CoA thioesterase n=4 Tax=Bifidobacterium dentium RepID=D2Q8T7_BIFDB
L3_072_362G1_scaffold_424_23
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28299..29954)
DNA (1656bp) protein (552aa)
ATP-binding cassette protein, ChvD family {ECO:0000313|EMBL:EFM41064.1}; EC=3.6.3.- {ECO:0000313|EMBL:EFM41064.1};; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
ABC transporter ATP-binding protein (EC:3.6.3.41)
ATP-binding cassette protein, ChvD family n=2 Tax=Bifidobacterium dentium RepID=E0Q8C2_9BIFI
L3_072_362G1_scaffold_424_24
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30150..31073)
DNA (924bp) protein (308aa)
Beta-lactamase n=2 Tax=Bifidobacterium dentium RepID=B1S5N2_9BIFI
Beta-lactamase {ECO:0000313|EMBL:ETO98368.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
hypothetical protein
L3_072_362G1_scaffold_424_25
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31265..31690)
DNA (426bp) protein (142aa)
fms; peptide deformylase (EC:3.5.1.88)
Peptide deformylase n=4 Tax=Bifidobacterium dentium RepID=D2Q8U0_BIFDB
Peptide deformylase {ECO:0000256|RuleBase:RU003335, ECO:0000256|SAAS:SAAS00013131}; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 /; Bd1).;"
L3_072_362G1_scaffold_424_26
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31862..33343)
DNA (1482bp) protein (494aa)
Conserved hypothetical amidohydrolase n=1 Tax=Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 / Bd1) RepID=D2Q8U1_BIFDB
Amidohydrolase family protein {ECO:0000313|EMBL:ETO98311.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
hypothetical protein
L3_072_362G1_scaffold_424_27
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

33518..34402
DNA (885bp) protein (295aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=E0Q8B7_9BIFI
PF04480 domain protein {ECO:0000313|EMBL:ETO98293.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
hypothetical protein
L3_072_362G1_scaffold_424_28
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(34536..35816)
DNA (1281bp) protein (427aa)
metY; O-acetylhomoserine aminocarboxypropyltransferase (EC:2.5.1.48)
MetY O-acetylhomoserine aminocarboxypropyltransferase n=2 Tax=Bifidobacterium dentium RepID=D2Q8U3_BIFDB
O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase {ECO:0000313|EMBL:ETO98277.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
L3_072_362G1_scaffold_424_29
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

36040..37386
DNA (1347bp) protein (449aa)
Xylose isomerase {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609}; EC=5.3.1.5 {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609};; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
xylose isomerase (EC:5.3.1.5)
Xylose isomerase n=3 Tax=Bifidobacterium dentium RepID=D2Q8U4_BIFDB
Displaying 29 items

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