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L3_072_362G1_scaffold_425

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_362G1_scaffold_425_1
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(142..2241)
DNA (2100bp) protein (700aa)
Beta-galactosidase {ECO:0000256|PIRNR:PIRNR001084}; Short=Beta-gal {ECO:0000256|PIRNR:PIRNR001084};; EC=3.2.1.23 {ECO:0000256|PIRNR:PIRNR001084};; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium; acetobutylicum).;"
Beta-galactosidase n=1 Tax=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) RepID=A6LST4_CLOB8
Beta-galactosidase
L3_072_362G1_scaffold_425_2
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2297..4012)
DNA (1716bp) protein (572aa)
methyl-accepting chemotaxis protein n=1 Tax=Clostridium botulinum RepID=UPI000368214D
methyl-accepting chemotaxis sensory transducer
Methyl-accepting chemotaxis (MCP) signaling domain protein {ECO:0000313|EMBL:AIY79638.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
L3_072_362G1_scaffold_425_3
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4134..4976)
DNA (843bp) protein (281aa)
Binding-protein-dependent transport system inner membrane component n=2 Tax=Clostridium butyricum RepID=M8K838_CLOBU
Lactose ABC transporter permease {ECO:0000313|EMBL:KHD16510.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
binding-protein-dependent transport system inner membrane protein
L3_072_362G1_scaffold_425_4
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4969..5853)
DNA (885bp) protein (295aa)
L-arabinose transport system permease protein AraP n=4 Tax=Clostridium butyricum RepID=B1QWE9_CLOBU
L-arabinose transport system permease protein AraP {ECO:0000313|EMBL:EEP53858.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
lacF; lactose transport system permease protein LacF
L3_072_362G1_scaffold_425_5
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6117..7430)
DNA (1314bp) protein (438aa)
UPI0003D5ACD8 related cluster n=1 Tax=unknown RepID=UPI0003D5ACD8
ABC transporter sugar binding protein {ECO:0000313|EMBL:KJZ83759.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
extracellular solute-binding protein
L3_072_362G1_scaffold_425_6
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7733..8743)
DNA (1011bp) protein (337aa)
LacI family transcriptional regulator n=1 Tax=Clostridium beijerinckii RepID=UPI00035DB0B6
LacI family transcriptional regulator {ECO:0000313|EMBL:ETD71383.1}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
LacI family transcriptional regulator
L3_072_362G1_scaffold_425_7
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8997..9947)
DNA (951bp) protein (317aa)
UPI0003D62CFA related cluster n=1 Tax=unknown RepID=UPI0003D62CFA
ABC transporter {ECO:0000313|EMBL:KHD16177.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
hypothetical protein
L3_072_362G1_scaffold_425_8
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10081..10836)
DNA (756bp) protein (252aa)
Ferrichrome transport ATP-binding protein FhuC n=4 Tax=Clostridium butyricum RepID=B1R1G8_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ36391.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
iron chelate uptake ABC transporter ATP-binding protein
L3_072_362G1_scaffold_425_9
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10838..11839)
DNA (1002bp) protein (334aa)
UPI0003D68B0A related cluster n=1 Tax=unknown RepID=UPI0003D68B0A
Iron ABC transporter permease {ECO:0000313|EMBL:KHD16179.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
fecCD transport family protein
L3_072_362G1_scaffold_425_10
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11829..12782)
DNA (954bp) protein (318aa)
Iron chelate uptake ABC transporter, FeCT family, permease protein n=2 Tax=Clostridium butyricum RepID=C4IIB1_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ36389.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
iron compound ABC uptake transporter, permease protein
L3_072_362G1_scaffold_425_11
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13048..15036)
DNA (1989bp) protein (663aa)
Serine phosphatase n=3 Tax=Clostridium butyricum RepID=B1R1F8_CLOBU
Serine/threonine protein phosphatase {ECO:0000313|EMBL:KHD16169.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
hypothetical protein
L3_072_362G1_scaffold_425_12
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15094..15531)
DNA (438bp) protein (146aa)
Serine-protein kinase RsbW {ECO:0000313|EMBL:KJZ83910.1}; EC=2.7.11.1 {ECO:0000313|EMBL:KJZ83910.1};; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
Anti-sigma regulatory factor n=4 Tax=Clostridium butyricum RepID=B1R1F9_CLOBU
anti-sigma regulatory factor, serine/threonine protein kinase
L3_072_362G1_scaffold_425_13
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15588..17696)
DNA (2109bp) protein (703aa)
Glycogen operon protein GlgX homolog {ECO:0000256|SAAS:SAAS00046872}; EC=3.2.1.- {ECO:0000256|SAAS:SAAS00055489};; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
glycogen debranching protein GlgX (EC:3.2.1.68)
Putative glycogen debranching enzyme GlgX n=1 Tax=Clostridium butyricum DKU-01 RepID=M8K654_CLOBU
L3_072_362G1_scaffold_425_14
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17750..18055)
DNA (306bp) protein (102aa)
UPI0003D634DD related cluster n=1 Tax=unknown RepID=UPI0003D634DD
Anti-sigma factor antagonist {ECO:0000256|RuleBase:RU003749}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
anti-sigma-factor antagonist
L3_072_362G1_scaffold_425_15
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18514..19731)
DNA (1218bp) protein (406aa)
trpB; tryptophan synthase subunit beta (EC:4.2.1.20)
Tryptophan synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00133}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00133, ECO:0000313|EMBL:CDH90883.1};; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
Tryptophan synthase beta chain n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UTR5_CLOBO
L3_072_362G1_scaffold_425_16
unknown

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comp(19761..20276)
DNA (516bp) protein (172aa)

This feature has no annotations

L3_072_362G1_scaffold_425_17
unknown

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comp(20290..20541)
DNA (252bp) protein (84aa)

This feature has no annotations

L3_072_362G1_scaffold_425_18
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20724..23261)
DNA (2538bp) protein (846aa)
Pyruvate phosphate dikinase, PEP/pyruvate binding domain protein n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LHR3_9FIRM
Pyruvate phosphate dikinase, PEP/pyruvate binding domain protein {ECO:0000313|EMBL:EET59803.1}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
phosphoenolpyruvate synthase/pyruvate phosphate dikinase
L3_072_362G1_scaffold_425_19
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(23505..24443)
DNA (939bp) protein (313aa)
Nucleotide-binding domain-containing protein CobW/HypB/UreG family n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MN87_9CLOT
nucleotide-binding domain-containing protein CobW/HypB/UreG family
Nucleotide-binding domain-containing protein CobW/HypB/UreG family {ECO:0000313|EMBL:AGF56186.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
L3_072_362G1_scaffold_425_20
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24468..25679)
DNA (1212bp) protein (404aa)
Cobalamin synthesis protein CobW n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1LT39_9CLOT
cobW; cobalamin synthesis protein CobW
Cobalamin synthesis protein CobW {ECO:0000313|EMBL:AGF56185.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
L3_072_362G1_scaffold_425_21
Clostridium acetobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26002..26202)
DNA (201bp) protein (67aa)
Putative stress-responsive transcriptional regulator PspC n=3 Tax=Clostridium acetobutylicum RepID=F0KE55_CLOAE
Putative stress-responsive transcriptional regulator PspC
Putative stress-responsive transcriptional regulator PspC {ECO:0000313|EMBL:AAK80606.1}; TaxID=272562 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG; 5710 / VKM B-1787).;"
L3_072_362G1_scaffold_425_22
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26361..27290)
DNA (930bp) protein (310aa)
Transporter n=2 Tax=Clostridium butyricum RepID=B1QUX1_CLOBU
Transporter {ECO:0000313|EMBL:EEP54503.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
putative membrane protein
L3_072_362G1_scaffold_425_23
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27577..28236)
DNA (660bp) protein (220aa)
7-cyano-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633, ECO:0000256|SAAS:SAAS00195886}; EC=6.3.4.20 {ECO:0000256|HAMAP-Rule:MF_01633, ECO:0000256|SAAS:SAAS00029421};; 7-cyano-7-carbaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633}; PreQ(0) synthase {ECO:0000256|HAMAP-Rule:MF_01633}; Queuosine biosynthesis protein QueC {ECO:0000256|HAMAP-Rule:MF_01633}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
queC; 7-cyano-7-deazaguanine synthase (EC:6.3.4.20)
7-cyano-7-deazaguanine synthase n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6U9Z8_9CLOT
L3_072_362G1_scaffold_425_24
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28485..28694)
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JNN2_CELLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADZ85921.1}; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
L3_072_362G1_scaffold_425_25
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28728..30266)
DNA (1539bp) protein (513aa)
Uncharacterized protein n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TWP7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EKQ57185.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
hypothetical protein
L3_072_362G1_scaffold_425_26
unknown

Not on your lists

comp(30312..30803)
DNA (492bp) protein (164aa)

This feature has no annotations

L3_072_362G1_scaffold_425_27
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30852..31577)
DNA (726bp) protein (242aa)
hypothetical protein n=1 Tax=Clostridium botulinum RepID=UPI0002DCD2DE
Tetratricopeptide repeat family protein {ECO:0000313|EMBL:AIY82170.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
putative TPR repeat-containing protein
L3_072_362G1_scaffold_425_28
Clostridium cellulovorans, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31812..32351
DNA (540bp) protein (180aa)
Putative uncharacterized protein n=1 Tax=Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 / 743B) RepID=D9SUQ6_CLOC7
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADL50961.1}; TaxID=573061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 /; 743B).;"
L3_072_362G1_scaffold_425_29
Clostridium cellulovorans, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32428..32910
DNA (483bp) protein (161aa)
7-cyano-7-deazaguanine reductase (EC:1.7.1.13)
NADPH-dependent 7-cyano-7-deazaguanine reductase {ECO:0000256|HAMAP-Rule:MF_00818, ECO:0000256|SAAS:SAAS00184002}; EC=1.7.1.13 {ECO:0000256|HAMAP-Rule:MF_00818, ECO:0000256|SAAS:SAAS00001352};; 7-cyano-7-carbaguanine reductase {ECO:0000256|HAMAP-Rule:MF_00818}; NADPH-dependent nitrile oxidoreductase {ECO:0000256|HAMAP-Rule:MF_00818}; PreQ(0) reductase {ECO:0000256|HAMAP-Rule:MF_00818}; TaxID=573061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 /; 743B).;"
NADPH-dependent 7-cyano-7-deazaguanine reductase n=1 Tax=Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 / 743B) RepID=D9SUQ7_CLOC7
L3_072_362G1_scaffold_425_30
Bacillus mycoides, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(33220..34044)
DNA (825bp) protein (275aa)
membrane protein n=1 Tax=Bacillus sp. FJAT-13831 RepID=UPI000361848F
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIK39981.1}; TaxID=1405 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group.;" source="Bacillus mycoides.;"
Displaying items 1-30 of 33 in total

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