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L3_072_362G1_scaffold_489

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_362G1_scaffold_489_1
unknown

Not on your lists

comp(3..107)
DNA (105bp) protein (35aa)

This feature has no annotations

L3_072_362G1_scaffold_489_2
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(146..1309)
DNA (1164bp) protein (388aa)
Iron-containing alcohol dehydrogenase n=2 Tax=Clostridium beijerinckii RepID=A6LVG8_CLOB8
iron-containing alcohol dehydrogenase
Iron-containing alcohol dehydrogenase {ECO:0000313|EMBL:ABR34348.1}; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium; acetobutylicum).;"
L3_072_362G1_scaffold_489_3
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1477..2325)
DNA (849bp) protein (283aa)
hbd1; 3-hydroxybutyryl-CoA dehydrogenase Hbd (EC:1.1.1.157)
Beta-hydroxybutyryl-CoA-dehydrogenase n=4 Tax=Clostridium RepID=B3VSA2_CLOBU
3-hydroxybutyryl-CoA dehydrogenase {ECO:0000313|EMBL:ENZ30398.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
L3_072_362G1_scaffold_489_4
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2548..3555)
DNA (1008bp) protein (336aa)
Electron transfer flavoprotein alpha-subunit n=1 Tax=Clostridium saccharobutylicum RepID=B2RGG6_CLOSA
Electron transfer flavoprotein alpha-subunit {ECO:0000313|EMBL:CAQ53137.1}; TaxID=169679 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum.;"
fixB2; protein FixB
L3_072_362G1_scaffold_489_5
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3578..4357)
DNA (780bp) protein (260aa)
Electron transfer flavoprotein, beta subunit n=2 Tax=Clostridium butyricum RepID=M8J6F6_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ30396.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
electron transfer flavoprotein, alpha/beta-subunit-like protein
L3_072_362G1_scaffold_489_6
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4371..5510)
DNA (1140bp) protein (380aa)
bcd1; acyl-CoA dehydrogenase, short-chain specific (EC:1.3.8.1)
Butyryl-CoA dehydrogenase {ECO:0000313|EMBL:EEP55355.1}; EC=1.3.8.1 {ECO:0000313|EMBL:EEP55355.1};; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
Acyl-coa dehydrogenase, short-chain specific n=3 Tax=Clostridium butyricum RepID=B1R079_CLOBU
L3_072_362G1_scaffold_489_7
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5591..6376)
DNA (786bp) protein (262aa)
3-hydroxybutyryl-CoA dehydratase {ECO:0000313|EMBL:EEP55173.1}; EC=4.2.1.55 {ECO:0000313|EMBL:EEP55173.1};; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
crt; 3-hydroxybutyryl-CoA dehydratase (EC:4.2.1.55)
3-hydroxybutyryl-CoA dehydratase n=4 Tax=Clostridium butyricum RepID=B1R078_CLOBU
L3_072_362G1_scaffold_489_8
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6685..7311)
DNA (627bp) protein (209aa)
Redox-sensing transcriptional repressor Rex n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MLF7_CLOSA
rex; redox-sensing transcriptional repressor Rex
Redox-sensing transcriptional repressor Rex {ECO:0000256|HAMAP-Rule:MF_01131}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_072_362G1_scaffold_489_9
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7810..9330)
DNA (1521bp) protein (507aa)
bglH5; 6-phospho-beta-glucosidase (EC:3.2.1.21)
Glycosyl hydrolase, family 1 n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CWF9_9CLOT
Glycosyl hydrolase, family 1 {ECO:0000313|EMBL:EEG56586.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
L3_072_362G1_scaffold_489_10
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9335..9670)
DNA (336bp) protein (112aa)
PTS system, Lactose/Cellobiose specific IIA subunit n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CWF8_9CLOT
PTS system, Lactose/Cellobiose specific IIA subunit {ECO:0000313|EMBL:EEG56585.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
ptcA; putative PTS system, cellobiose-specific IIA component
L3_072_362G1_scaffold_489_11
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9683..10957)
DNA (1275bp) protein (425aa)
PTS system, lactose/cellobiose family IIC component n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CWF7_9CLOT
Permease IIC component {ECO:0000256|PIRNR:PIRNR006351}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
celB.3; PTS system cellobiose-specific transporter subunit IIC
L3_072_362G1_scaffold_489_12
Lactobacillus kullabergensis, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(10972..11283)
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CWF6_9CLOT
PTS Lac IIB {ECO:0000313|EMBL:KJY58216.1}; TaxID=1218493 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus kullabergensis.;"
PTS system lactose/cellobiose-specific transporter subunit IIB
L3_072_362G1_scaffold_489_13
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11526..13424
DNA (1899bp) protein (633aa)
HTH domain protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CWF4_9CLOT
HTH domain protein {ECO:0000313|EMBL:EEG56581.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
PTS operon transcription antiterminator
L3_072_362G1_scaffold_489_14
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13552..13794)
DNA (243bp) protein (81aa)
hypothetical protein n=1 Tax=Clostridium beijerinckii RepID=UPI00031F9878
Uncharacterized protein {ECO:0000313|EMBL:EKQ57738.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
hypothetical protein
L3_072_362G1_scaffold_489_15
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13950..14357)
DNA (408bp) protein (136aa)
Glyoxalase family protein n=1 Tax=Clostridium sp. D5 RepID=F0Z0H8_9CLOT
Glyoxalase family protein {ECO:0000313|EMBL:EGB92599.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
glyoxalase family protein
L3_072_362G1_scaffold_489_16
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14406..15239)
DNA (834bp) protein (278aa)
Putative transcriptional regulator, AraC family n=1 Tax=Clostridium sp. D5 RepID=F0Z0H9_9CLOT
Putative transcriptional regulator, AraC family {ECO:0000313|EMBL:EGB92600.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
AraC family transcriptional regulator
L3_072_362G1_scaffold_489_17
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15710..16234
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) RepID=A6LVS9_CLOB8
Uncharacterized protein {ECO:0000313|EMBL:KJZ82851.1}; TaxID=1523155 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN22A.;"
hypothetical protein
L3_072_362G1_scaffold_489_18
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16391..16606
DNA (216bp) protein (72aa)
YvrJ protein family n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MHL1_9CLOT
YvrJ protein family
YvrJ protein family {ECO:0000313|EMBL:AGF57409.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
L3_072_362G1_scaffold_489_19
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16754..17335)
DNA (582bp) protein (194aa)
Zinc dependent phospholipase C n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MLN0_CLOSA
zinc dependent phospholipase C
Zinc dependent phospholipase C {ECO:0000313|EMBL:AGX41403.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_072_362G1_scaffold_489_20
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17496..18221)
DNA (726bp) protein (242aa)
Glucosamine-6-phosphate deaminase {ECO:0000256|HAMAP-Rule:MF_01241, ECO:0000256|SAAS:SAAS00029492}; EC=3.5.99.6 {ECO:0000256|HAMAP-Rule:MF_01241, ECO:0000256|SAAS:SAAS00029496};; GlcN6P deaminase {ECO:0000256|HAMAP-Rule:MF_01241}; Glucosamine-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01241}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
glucosamine-6-phosphate deaminase n=1 Tax=Clostridium beijerinckii RepID=UPI000303FBA9
glucosamine-6-phosphate isomerase
L3_072_362G1_scaffold_489_21
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18327..19619)
DNA (1293bp) protein (431aa)
Lichenan permease iic component n=1 Tax=Clostridium butyricum DKU-01 RepID=M8JFC2_CLOBU
Permease IIC component {ECO:0000256|PIRNR:PIRNR006351}; TaxID=1523155 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN22A.;"
PTS system lactose/cellobiose family transporter subunit IIC
L3_072_362G1_scaffold_489_22
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19644..20735)
DNA (1092bp) protein (364aa)
Outer surface protein n=1 Tax=Clostridium butyricum DKU-01 RepID=M8JGN8_CLOBU
Outer surface protein {ECO:0000313|EMBL:KHD14278.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
outer surface protein
L3_072_362G1_scaffold_489_23
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20748..21641)
DNA (894bp) protein (298aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=N9YRZ9_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ30386.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
ATPase family protein
L3_072_362G1_scaffold_489_24
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21680..21985)
DNA (306bp) protein (102aa)
Lichenan-specific phosphotransferase enzyme iia component n=1 Tax=Clostridium butyricum DKU-01 RepID=M8KA89_CLOBU
PTS cellobiose transporter subunit IIA {ECO:0000313|EMBL:KHD14280.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
PTS system lactose/cellobiose-specific transporter subunit IIA
L3_072_362G1_scaffold_489_25
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22032..22337)
DNA (306bp) protein (102aa)
PTS system, Lactose/Cellobiose specific IIB subunit n=2 Tax=Clostridium butyricum RepID=M8K221_CLOBU
PTS sugar transporter {ECO:0000313|EMBL:KHD14281.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
PTS system, lactose/cellobiose-specific family, IIB component
L3_072_362G1_scaffold_489_26
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22544..25309)
DNA (2766bp) protein (922aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0A1L3_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ30383.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
NtrC family Transcriptional regulator, ATPase domain
L3_072_362G1_scaffold_489_27
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25464..26630)
DNA (1167bp) protein (389aa)
N-acetylglucosamine-6-phosphate deacetylase {ECO:0000256|PIRNR:PIRNR038994}; EC=3.5.1.25 {ECO:0000256|PIRNR:PIRNR038994};; GlcNAc 6-P deacetylase {ECO:0000256|PIRNR:PIRNR038994}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
N-acetylglucosamine-6-phosphate deacetylase n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TV10_9CLOT
N-acetylglucosamine-6-phosphate deacetylase
L3_072_362G1_scaffold_489_28
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26827..28860)
DNA (2034bp) protein (678aa)
Methyl-accepting chemotaxis protein n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CAA9_9CLOT
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:EOC99269.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
methyl-accepting chemotaxis sensory transducer with Cache sensor
L3_072_362G1_scaffold_489_29
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29256..30572
DNA (1317bp) protein (439aa)
UPI0003D63EB7 related cluster n=1 Tax=unknown RepID=UPI0003D63EB7
6-phospho-beta-glucosidase {ECO:0000313|EMBL:ETI90795.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
6-phospho-beta-glucosidase
L3_072_362G1_scaffold_489_30
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30627..31973)
DNA (1347bp) protein (449aa)
Transcriptional regulator, GntR family/aminotransferase, classes I and II n=1 Tax=Clostridium butyricum DKU-01 RepID=M8JNW9_CLOBU
Transcriptional regulator, GntR family/aminotransferase, classes I and II {ECO:0000313|EMBL:EEP52812.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
GntR family transcriptional regulator
Displaying items 1-30 of 31 in total

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