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L3_072_362G1_scaffold_582

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_362G1_scaffold_582_1
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(1..126)
DNA (126bp) protein (42aa)
Phage protein n=1 Tax=Lactobacillus paracasei subsp. paracasei Lpp43 RepID=S2S9D9_LACPA
Uncharacterized protein {ECO:0000313|EMBL:GAN35852.1}; TaxID=1435038 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei NRIC 0644.;"
L3_072_362G1_scaffold_582_2
Lactobacillus phage Lc-Nu, Caudovirales, Viruses

Not on your lists

comp(138..3272)
DNA (3135bp) protein (1045aa)
Putative host specificity protein n=1 Tax=Lactobacillus phage Lc-Nu RepID=A8YQK1_9CAUD
Putative host specificity protein {ECO:0000313|EMBL:AAR04639.1}; TaxID=146269 species="Viruses; dsDNA viruses, no RNA stage; Caudovirales; Siphoviridae.;" source="Lactobacillus phage Lc-Nu.;"
Hypothetical protein
L3_072_362G1_scaffold_582_3
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(3272..4804)
DNA (1533bp) protein (511aa)
Putative phage tail protein n=1 Tax=Lactobacillus paracasei subsp. paracasei Lpp70 RepID=S2U6I0_LACPA
Putative phage tail protein {ECO:0000313|EMBL:EPD09340.1}; TaxID=1256198 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei Lpp70.;"
phage tail fiber protein
L3_072_362G1_scaffold_582_4
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(4805..9067)
DNA (4263bp) protein (1421aa)
Tape measure domain protein n=1 Tax=Lactobacillus rhamnosus LMS2-1 RepID=C2JXE5_LACRH
Tape measure domain protein {ECO:0000313|EMBL:EEN80278.1}; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
hypothetical protein
L3_072_362G1_scaffold_582_5
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(9074..9304)
DNA (231bp) protein (77aa)
Orf76 n=4 Tax=root RepID=Q3L0S5_9CAUD
Phage protein {ECO:0000313|EMBL:KIC96971.1}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
phage protein
L3_072_362G1_scaffold_582_6
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(9282..9752)
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Lactobacillus rhamnosus LMS2-1 RepID=C2JXE7_LACRH
Uncharacterized protein {ECO:0000313|EMBL:EEN80280.1}; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
putative phage tail protein
L3_072_362G1_scaffold_582_7
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(9799..10431)
DNA (633bp) protein (211aa)
Phage major tail protein n=1 Tax=Lactobacillus casei A2-362 RepID=K6R5U0_LACCA
Phage major tail protein {ECO:0000313|EMBL:EKQ10998.1}; TaxID=1051653 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei A2-362.;"
phage-related major tail protein
L3_072_362G1_scaffold_582_8
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(10432..10812)
DNA (381bp) protein (127aa)
Putative tail component n=1 Tax=Lactobacillus casei A2-362 RepID=K6RDJ5_LACCA
Putative tail component {ECO:0000313|EMBL:EKQ10999.1}; TaxID=1051653 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei A2-362.;"
hypothetical protein
L3_072_362G1_scaffold_582_9
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(10809..11228)
DNA (420bp) protein (140aa)
Phage tail assembly n=1 Tax=Lactobacillus casei A2-362 RepID=K6RE37_LACCA
Phage tail assembly {ECO:0000313|EMBL:EKQ11000.1}; TaxID=1051653 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei A2-362.;"
putative phage head-tail joining protein
L3_072_362G1_scaffold_582_10
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11231..11494)
DNA (264bp) protein (88aa)
Phage head-tail joining protein n=1 Tax=Lactobacillus paracasei subsp. paracasei Lpp120 RepID=S2NHC2_LACPA
head-tail joining protein
Head-tail joining protein {ECO:0000313|EMBL:EEQ65369.1}; TaxID=537973 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei 8700:2.;"
L3_072_362G1_scaffold_582_11
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11565..11855)
DNA (291bp) protein (97aa)
Phage protein n=1 Tax=Lactobacillus rhamnosus (strain ATCC 53103 / GG) RepID=C7TCT4_LACRG
phage protein
Phage protein {ECO:0000313|EMBL:BAI41998.1}; Phage-related protein without homology {ECO:0000313|EMBL:CAR87427.1}; TaxID=568703 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus (strain ATCC 53103 / GG).;"
L3_072_362G1_scaffold_582_12
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11926..13893)
DNA (1968bp) protein (656aa)
Phage protein n=1 Tax=Lactobacillus casei A2-362 RepID=K6R5U4_LACCA
Phage protein {ECO:0000313|EMBL:EKQ11003.1}; TaxID=1051653 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei A2-362.;"
phage capsid protein
L3_072_362G1_scaffold_582_13
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(13893..14993)
DNA (1101bp) protein (367aa)
Phage portal protein n=1 Tax=Lactobacillus casei subsp. casei ATCC 393 RepID=S6BS70_LACCA
phage-related portal protein
Phage portal protein {ECO:0000313|EMBL:BAN74528.1}; TaxID=219334 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei subsp. casei ATCC 393.;"
L3_072_362G1_scaffold_582_14
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(14990..15172)
DNA (183bp) protein (61aa)
Uncharacterized protein n=1 Tax=Lactobacillus paracasei subsp. paracasei Lpp125 RepID=S2TEV6_LACPA
Uncharacterized protein {ECO:0000313|EMBL:EPC74182.1}; TaxID=1256208 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei Lpp41.;"
L3_072_362G1_scaffold_582_15
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(15294..17186)
DNA (1893bp) protein (631aa)
Phage terminase large subunit n=1 Tax=Lactobacillus rhamnosus (strain ATCC 53103 / GG) RepID=C8UUE7_LACRG
phage terminase large subunit
Phage terminase large subunit {ECO:0000313|EMBL:BAI42001.1}; TaxID=568703 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus (strain ATCC 53103 / GG).;"
L3_072_362G1_scaffold_582_16
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(17180..17644)
DNA (465bp) protein (155aa)
Phage terminase small subunit n=1 Tax=Lactobacillus rhamnosus (strain ATCC 53103 / GG) RepID=C7TCT8_LACRG
phage terminase small subunit
Phage terminase small subunit {ECO:0000313|EMBL:BAI42002.1}; Phage-related terminase small subunit {ECO:0000313|EMBL:CAR87431.1}; TaxID=568703 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus (strain ATCC 53103 / GG).;"
L3_072_362G1_scaffold_582_17
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(18107..19135)
DNA (1029bp) protein (343aa)
Uncharacterized protein n=1 Tax=Lactobacillus paracasei subsp. paracasei Lpp125 RepID=S2THV1_LACPA
Phage protein {ECO:0000313|EMBL:EPC73221.1}; TaxID=1256208 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei Lpp41.;"
phage related methyltransferase
L3_072_362G1_scaffold_582_18
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(19132..19644)
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Lactobacillus rhamnosus LMS2-1 RepID=C2JXF9_LACRH
Uncharacterized protein {ECO:0000313|EMBL:EEN80292.1}; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
L3_072_362G1_scaffold_582_19
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(19645..19821)
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Lactobacillus paracasei subsp. paracasei Lpp41 RepID=S2R7I2_LACPA
Uncharacterized protein {ECO:0000313|EMBL:EPC73220.1}; TaxID=1256208 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei Lpp41.;"
L3_072_362G1_scaffold_582_20
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(19818..20363)
DNA (546bp) protein (182aa)
HNH endonuclease domain protein n=1 Tax=Lactobacillus rhamnosus LMS2-1 RepID=C2JXG0_LACRH
HNH endonuclease domain protein {ECO:0000313|EMBL:EEN80293.1}; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
phage-related HNH nuclease
L3_072_362G1_scaffold_582_21
Lactobacillus phage phiAQ113, Caudovirales, Viruses

Not on your lists

comp(20344..20754)
DNA (411bp) protein (137aa)
Single-stranded DNA-binding protein n=1 Tax=Lactobacillus paracasei subsp. paracasei Lpp125 RepID=S2TJS8_LACPA
ssb4; single-stranded DNA-binding protein
Single-stranded DNA-binding protein {ECO:0000256|PIRNR:PIRNR002070}; TaxID=1206110 species="Viruses; dsDNA viruses, no RNA stage; Caudovirales; Myoviridae.;" source="Lactobacillus phage phiAQ113.;"
L3_072_362G1_scaffold_582_22
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(20741..21520)
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Lactobacillus casei subsp. casei ATCC 393 RepID=S6BYP6_LACCA
Uncharacterized protein {ECO:0000313|EMBL:BAN74536.1}; TaxID=219334 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei subsp. casei ATCC 393.;"
hypothetical protein
L3_072_362G1_scaffold_582_23
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(21520..21795)
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Lactobacillus rhamnosus LMS2-1 RepID=C2JXG3_LACRH
Uncharacterized protein {ECO:0000313|EMBL:EEN80296.1}; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
hypothetical protein
L3_072_362G1_scaffold_582_24
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(21799..22386)
DNA (588bp) protein (196aa)
HNH endonuclease domain protein n=1 Tax=Lactobacillus rhamnosus LMS2-1 RepID=C2JXG4_LACRH
HNH endonuclease domain protein {ECO:0000313|EMBL:EEN80297.1}; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
HNH homing endonuclease
L3_072_362G1_scaffold_582_25
unknown

Not on your lists

comp(23128..23406)
DNA (279bp) protein (93aa)

This feature has no annotations

L3_072_362G1_scaffold_582_26
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(23506..24747)
DNA (1242bp) protein (414aa)
Uncharacterized protein n=1 Tax=Lactobacillus paracasei subsp. paracasei Lpp120 RepID=S2NT23_LACPA
Uncharacterized protein {ECO:0000313|EMBL:EPC69141.1}; TaxID=1256204 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei Lpp14.;"
hypothetical protein
L3_072_362G1_scaffold_582_27
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(26353..27312)
DNA (960bp) protein (320aa)
Uncharacterized protein n=1 Tax=Lactobacillus paracasei subsp. paracasei Lpp14 RepID=S2RPE7_LACPA
Uncharacterized protein {ECO:0000313|EMBL:EPC69143.1}; TaxID=1256204 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei Lpp14.;"
hypothetical protein
L3_072_362G1_scaffold_582_28
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(27350..28219)
DNA (870bp) protein (290aa)
Uncharacterized protein n=3 Tax=Lactobacillus casei group RepID=Q038T6_LACC3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN71730.1}; TaxID=1226298 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei JCM 8130.;"
Displaying 28 items

View Taxonomy