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L3_072_362G1_scaffold_588

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_362G1_scaffold_588_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..105)
DNA (105bp) protein (35aa)
Reverse rubrerythrin-1 n=1 Tax=Clostridium difficile DA00273 RepID=T3XYF1_CLODI
ruberythrin
Putative rubrerythrin {ECO:0000313|EMBL:CAJ68389.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_072_362G1_scaffold_588_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(328..1242)
DNA (915bp) protein (305aa)
EamA-like transporter family protein n=43 Tax=Clostridium difficile RepID=T2UUZ0_CLODI
putative transporter
Putative transporter {ECO:0000313|EMBL:CCL21650.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_072_362G1_scaffold_588_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1658..2539
DNA (882bp) protein (294aa)
Polysaccharide deacetylase family protein n=167 Tax=Clostridium difficile RepID=T3HDY0_CLODC
polysaccharide deacetylase
Polysaccharide deacetylase family protein {ECO:0000313|EMBL:EQI00353.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
L3_072_362G1_scaffold_588_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2600..3808)
DNA (1209bp) protein (403aa)
tyrosyl-tRNA synthetase (EC:6.1.1.1)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02007, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02007, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02007}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
Tyrosine--tRNA ligase n=2 Tax=Clostridium difficile RepID=T4PHP5_CLODI
L3_072_362G1_scaffold_588_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4285..5274)
DNA (990bp) protein (330aa)
Putative membrane protein n=4 Tax=Clostridium difficile RepID=C9XP45_CLODC
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:CBE03874.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L3_072_362G1_scaffold_588_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5426..5866
DNA (441bp) protein (147aa)
Acetyltransferase family protein n=33 Tax=Clostridium difficile RepID=T2XNB1_CLODI
Acetyltransferase family protein {ECO:0000313|EMBL:EQI00350.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
putative acyltransferase
L3_072_362G1_scaffold_588_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6193..6420
DNA (228bp) protein (76aa)
FeoA domain protein n=222 Tax=Clostridium difficile RepID=C9XMI8_CLODC
feoA2; ferrous ion transport protein
FeoA domain protein {ECO:0000313|EMBL:EQG76678.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_072_362G1_scaffold_588_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6446..8566
DNA (2121bp) protein (707aa)
Ferrous iron transport protein B n=152 Tax=Clostridium difficile RepID=C9XMI7_CLODC
feoB2; ferrous ion transport protein
Putative ferrous ion transport protein {ECO:0000313|EMBL:CBE03869.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L3_072_362G1_scaffold_588_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8699..9517)
DNA (819bp) protein (273aa)
MerR regulatory family protein n=109 Tax=Clostridium difficile RepID=C9XMI6_CLODC
MerR family transcriptional regulator
Transcriptional regulator, MerR family {ECO:0000313|EMBL:CCL21642.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_072_362G1_scaffold_588_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9736..10008
DNA (273bp) protein (91aa)
Uncharacterized protein n=146 Tax=Clostridium difficile RepID=T3HE99_CLODC
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCA62824.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_072_362G1_scaffold_588_11
unknown

Not on your lists

comp(10134..10400)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Clostridium difficile DA00132 RepID=T3MXR3_CLODI
L3_072_362G1_scaffold_588_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11449..13542)
DNA (2094bp) protein (698aa)
pdcA; diguanylate kinase signaling protein (EC:2.7.7.65)
Diguanylate cyclase domain protein n=23 Tax=Clostridium difficile RepID=T2YIN6_CLODI
Diguanylate cyclase domain protein {ECO:0000313|EMBL:EQE66293.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_072_362G1_scaffold_588_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14222..15118
DNA (897bp) protein (299aa)
Uncharacterized protein n=98 Tax=Clostridium difficile RepID=T3HEU0_CLODC
uncharacterised protein
Uncharacterized protein {ECO:0000313|EMBL:EQE66322.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_072_362G1_scaffold_588_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15093..15920
DNA (828bp) protein (276aa)
panB; Ketopantoate hydroxymethyltransferase (EC:2.1.2.11)
3-methyl-2-oxobutanoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725}; EC=2.1.2.11 {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725};; Ketopantoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
3-methyl-2-oxobutanoate hydroxymethyltransferase n=105 Tax=Clostridium difficile RepID=PANB_CLOD6
L3_072_362G1_scaffold_588_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15939..16787
DNA (849bp) protein (283aa)
Pantothenate synthetase {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAAS00247609}; Short=PS {ECO:0000256|HAMAP-Rule:MF_00158};; EC=6.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAAS00247611};; Pantoate--beta-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAAS00247610}; Pantoate-activating enzyme {ECO:0000256|HAMAP-Rule:MF_00158}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
panC; Pantothenate synthetase (EC:6.3.2.1)
Pantothenate synthetase n=29 Tax=Clostridium difficile RepID=T2U420_CLODI
L3_072_362G1_scaffold_588_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17198..17380
DNA (183bp) protein (61aa)
Uncharacterized protein n=203 Tax=Clostridium difficile RepID=T3HCD8_CLODC
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQG75817.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_072_362G1_scaffold_588_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18212..19126
DNA (915bp) protein (305aa)
Uncharacterized protein n=143 Tax=Clostridium difficile RepID=T3HEL1_CLODC
cotB; spore coat protein
Uncharacterized protein {ECO:0000313|EMBL:EQE66311.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_072_362G1_scaffold_588_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19516..20163
DNA (648bp) protein (216aa)
Uncharacterized protein n=155 Tax=Clostridium difficile RepID=G6B5K3_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQG76784.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
hypothetical protein
L3_072_362G1_scaffold_588_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20330..20929)
DNA (600bp) protein (200aa)
Uncharacterized protein n=152 Tax=Clostridium difficile RepID=G6BXF8_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ29241.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
intron RNA domain IV
L3_072_362G1_scaffold_588_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20904..21803)
DNA (900bp) protein (300aa)
4Fe-4S binding domain protein n=2 Tax=Clostridium difficile RepID=T4PHQ8_CLODI
Putative iron-sulfur binding protein {ECO:0000313|EMBL:CCL21631.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
iron-sulfur binding protein
L3_072_362G1_scaffold_588_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21814..21963)
DNA (150bp) protein (50aa)
Uncharacterized protein n=186 Tax=Clostridium difficile RepID=C9XKW9_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQI00334.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
L3_072_362G1_scaffold_588_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21956..22540)
DNA (585bp) protein (195aa)
AhpC/TSA family protein n=5 Tax=Clostridium difficile RepID=T4AXH0_CLODI
AhpC/TSA family protein {ECO:0000313|EMBL:EQI00333.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
thioredoxin
L3_072_362G1_scaffold_588_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22961..24286
DNA (1326bp) protein (442aa)
MATE efflux family protein n=68 Tax=Clostridium difficile RepID=G6BXF4_CLODI
MATE efflux family protein {ECO:0000313|EMBL:EQE66315.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
putative drug/sodium antiporter, MATE family
L3_072_362G1_scaffold_588_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24381..25175)
DNA (795bp) protein (265aa)
Putative membrane protein n=5 Tax=Clostridium difficile RepID=T4AT55_CLODI
Putative membrane protein {ECO:0000313|EMBL:EQI00330.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
ABC transporter permease
L3_072_362G1_scaffold_588_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25176..26051)
DNA (876bp) protein (292aa)
ABC-type transport system, multidrug-familyATP-binding protein (EC:3.6.3.-)
ABC transporter family protein n=69 Tax=Clostridium difficile RepID=T3HAG0_CLODC
ABC transporter family protein {ECO:0000313|EMBL:EQE66323.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_072_362G1_scaffold_588_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26055..26423)
DNA (369bp) protein (123aa)
Bacterial regulatory s, gntR family protein n=204 Tax=Clostridium difficile RepID=C9XJA4_CLODC
transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:CCL29648.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_072_362G1_scaffold_588_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26606..27265)
DNA (660bp) protein (220aa)
Deoxyribose-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00114, ECO:0000256|SAAS:SAAS00058202}; Short=DERA {ECO:0000256|HAMAP-Rule:MF_00114};; EC=4.1.2.4 {ECO:0000256|HAMAP-Rule:MF_00114, ECO:0000256|SAAS:SAAS00058202};; 2-deoxy-D-ribose 5-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00114}; Phosphodeoxyriboaldolase {ECO:0000256|HAMAP-Rule:MF_00114}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
Deoxyribose-phosphate aldolase n=182 Tax=Clostridium difficile RepID=DEOC_CLOD6
deoC; deoxyribose-phosphate aldolase
L3_072_362G1_scaffold_588_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27301..28545)
DNA (1245bp) protein (415aa)
Integral membrane protein MviN n=3 Tax=Clostridium difficile RepID=T4PC00_CLODI
Group I intron
Putative membrane protein (Virulence factor(Mvin) homologue) {ECO:0000313|EMBL:CEJ98087.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Displaying 28 items

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