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L3_072_362G1_scaffold_620

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_362G1_scaffold_620_1
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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282..932
DNA (651bp) protein (217aa)
DNA-3-methyladenine glycosylase (EC:3.2.2.21)
Putative 3-methyladenine DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00527, ECO:0000256|SAAS:SAAS00097343}; EC=3.2.2.- {ECO:0000256|HAMAP-Rule:MF_00527, ECO:0000256|SAAS:SAAS00097340};; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 /; Bd1).;"
Putative 3-methyladenine DNA glycosylase n=2 Tax=Bifidobacterium dentium RepID=D2Q5K9_BIFDB
L3_072_362G1_scaffold_620_2
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1008..1856)
DNA (849bp) protein (283aa)
Phospholipase, patatin family n=2 Tax=Bifidobacterium dentium RepID=E0Q572_9BIFI
Phospholipase, patatin family {ECO:0000313|EMBL:EFM42247.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
phospholipase
L3_072_362G1_scaffold_620_3
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1915..2691)
DNA (777bp) protein (259aa)
murI; glutamate racemase (EC:5.1.1.3)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium JCM 1195 = DSM 20436.;"
Glutamate racemase n=2 Tax=Bifidobacterium dentium RepID=D2Q5K7_BIFDB
L3_072_362G1_scaffold_620_4
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2755..3654
DNA (900bp) protein (300aa)
Diaminopimelate epimerase {ECO:0000256|SAAS:SAAS00028055}; EC=5.1.1.7 {ECO:0000256|SAAS:SAAS00028063};; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium JCM 1195 = DSM 20436.;"
dapF; diaminopimelate epimerase (EC:5.1.1.7)
Putative diaminopimelate epimerase n=1 Tax=Bifidobacterium dentium ATCC 27678 RepID=B1S6P6_9BIFI
L3_072_362G1_scaffold_620_5
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3657..4286)
DNA (630bp) protein (210aa)
Vitamin K epoxide reductase n=2 Tax=Bifidobacterium dentium RepID=D2Q5K5_BIFDB
Vitamin K epoxide reductase
Vitamin K epoxide reductase {ECO:0000313|EMBL:ADB10220.1}; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 /; Bd1).;"
L3_072_362G1_scaffold_620_6
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4371..5306
DNA (936bp) protein (312aa)
PHP domain containing protein (TRPH) (EC:2.7.7.7)
PHP domain protein n=2 Tax=Bifidobacterium dentium RepID=E0Q576_9BIFI
Bifidobacterium dentium JCM 1195 = DSM 20436 DNA, complete genome {ECO:0000313|EMBL:BAQ27539.1}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium JCM 1195 = DSM 20436.;"
L3_072_362G1_scaffold_620_7
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5308..5532)
DNA (225bp) protein (75aa)
ATP-binding protein n=4 Tax=Bifidobacterium dentium RepID=D2Q5K3_BIFDB
ATP-binding protein
Uncharacterized protein {ECO:0000313|EMBL:EFM42252.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
L3_072_362G1_scaffold_620_8
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5587..7161)
DNA (1575bp) protein (525aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=E1NBH2_9BIFI
PTS family porter {ECO:0000313|EMBL:ETO95752.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
aminoglycoside phosphotransferase
L3_072_362G1_scaffold_620_9
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7232..8740
DNA (1509bp) protein (503aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
pcrA; ATP-dependent DNA helicase PcrA (EC:3.1.11.5)
UvrD/REP helicase n=2 Tax=Bifidobacterium dentium RepID=E0Q579_9BIFI
L3_072_362G1_scaffold_620_10
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8765..10267)
DNA (1503bp) protein (501aa)
Uncharacterized protein n=4 Tax=Bifidobacterium dentium RepID=B1S6Q2_9BIFI
hypothetical protein
Bifidobacterium dentium JCM 1195 = DSM 20436 DNA, complete genome {ECO:0000313|EMBL:BAQ27535.1}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium JCM 1195 = DSM 20436.;"
L3_072_362G1_scaffold_620_11
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10337..11197
DNA (861bp) protein (287aa)
lon; peptidase S16 (EC:3.4.21.53)
Uncharacterized protein n=3 Tax=Bifidobacterium dentium RepID=B1S6Q3_9BIFI
Lon protease S16 C-terminal proteolytic domain protein {ECO:0000313|EMBL:ETO95762.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
L3_072_362G1_scaffold_620_12
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11307..11723
DNA (417bp) protein (139aa)
Uncharacterized protein n=3 Tax=Bifidobacterium dentium RepID=B1S6Q4_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:EFM42257.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
hypothetical protein
L3_072_362G1_scaffold_620_13
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11960..12250)
DNA (291bp) protein (97aa)
Uncharacterized protein n=4 Tax=Bifidobacterium dentium RepID=B1S6Q5_9BIFI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFM42258.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
L3_072_362G1_scaffold_620_14
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12439..12819
DNA (381bp) protein (127aa)
Uncharacterized protein n=3 Tax=Bifidobacterium dentium RepID=B1S6Q6_9BIFI
Transcriptional regulator, HxlR family {ECO:0000313|EMBL:ETO95692.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
MarR family transcriptional regulator
L3_072_362G1_scaffold_620_15
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13161..14585
DNA (1425bp) protein (475aa)
DivIVA domain repeat protein n=2 Tax=Bifidobacterium dentium RepID=E0Q585_9BIFI
DivIVA domain repeat protein {ECO:0000313|EMBL:EFM42260.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
pyridoxine biosynthesis enzyme
L3_072_362G1_scaffold_620_16
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14653..15831
DNA (1179bp) protein (393aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007105};; 1-deoxyxylulose-5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183}; 2-C-methyl-D-erythritol 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00183}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
ispC; IspC 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=2 Tax=Bifidobacterium dentium RepID=E0Q586_9BIFI
L3_072_362G1_scaffold_620_17
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15898..17085
DNA (1188bp) protein (396aa)
ispG; IspG 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC:1.17.7.1)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159}; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 /; Bd1).;"
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=2 Tax=Bifidobacterium dentium RepID=D2Q5J3_BIFDB
L3_072_362G1_scaffold_620_18
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17112..18815
DNA (1704bp) protein (568aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=E0Q588_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:EFM42263.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
hydrolase
L3_072_362G1_scaffold_620_19
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18877..19605
DNA (729bp) protein (243aa)
DNA repair protein RecO n=4 Tax=Bifidobacterium dentium RepID=D2Q5J1_BIFDB
recO; DNA repair protein RecO
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium JCM 1195 = DSM 20436.;"
L3_072_362G1_scaffold_620_20
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19551..20402
DNA (852bp) protein (284aa)
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
uppS; undecaprenyl pyrophosphate synthetase (EC:2.5.1.31)
Isoprenyl transferase n=3 Tax=Bifidobacterium dentium RepID=B1S6R2_9BIFI
L3_072_362G1_scaffold_620_21
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20709..21614
DNA (906bp) protein (302aa)
Uncharacterized protein n=1 Tax=Bifidobacterium dentium ATCC 27678 RepID=B1S6R3_9BIFI
PF13338 domain protein {ECO:0000313|EMBL:ETO95749.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
CTP synthase (UTP-ammonia lyase)
L3_072_362G1_scaffold_620_22
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21760..23028)
DNA (1269bp) protein (423aa)
Inosine-uridine preferring nucleoside hydrolase {ECO:0000313|EMBL:EFM42267.1}; EC=3.2.2.1 {ECO:0000313|EMBL:EFM42267.1};; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
iunH1; IunH1 inosine-uridine preferring nucleoside hydrolase (EC:3.2.2.3)
Inosine-uridine preferring nucleoside hydrolase n=2 Tax=Bifidobacterium dentium RepID=E0Q592_9BIFI
L3_072_362G1_scaffold_620_23
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23138..24214)
DNA (1077bp) protein (359aa)
NMT1/THI5-like protein n=2 Tax=Bifidobacterium dentium RepID=E0Q593_9BIFI
NMT1/THI5-like protein {ECO:0000313|EMBL:EFM42268.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
ABC transporter substrate-binding protein
L3_072_362G1_scaffold_620_24
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24458..25336)
DNA (879bp) protein (293aa)
Uncharacterized protein n=3 Tax=Bifidobacterium dentium RepID=B1S724_9BIFI
ABC transporter, permease protein {ECO:0000313|EMBL:EFM42269.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
ABC transporter permease
L3_072_362G1_scaffold_620_25
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25600..26925)
DNA (1326bp) protein (442aa)
Serine proteinase inhibitor n=2 Tax=Bifidobacterium dentium RepID=E0Q595_9BIFI
Serine proteinase inhibitor {ECO:0000313|EMBL:EFM42270.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
Neuroserpin precursor
L3_072_362G1_scaffold_620_26
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27138..27461
DNA (324bp) protein (108aa)
Response regulator receiver domain protein n=2 Tax=Bifidobacterium dentium RepID=E0Q596_9BIFI
two-component response regulator
Response regulator receiver domain protein {ECO:0000313|EMBL:ETO95840.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
Displaying 26 items

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