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L3_072_362G1_scaffold_624

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_362G1_scaffold_624_1
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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2..1507
DNA (1506bp) protein (502aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
Alanine--tRNA ligase n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2CAI6_BIFBR
Alanyl-tRNA synthetase
L3_072_362G1_scaffold_624_2
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1516..1968
DNA (453bp) protein (151aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
Putative Holliday junction resolvase n=3 Tax=Bifidobacterium breve RepID=F6C9R4_BIFBA
RNAse H domain protein, YqgF family
L3_072_362G1_scaffold_624_3
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1981..3168
DNA (1188bp) protein (396aa)
YceG family protein n=2 Tax=Bifidobacterium breve RepID=F6C9R3_BIFBA
pabC; Conserved hypothetical protein with aminodeoxychorismate lyase domain
YceG family protein {ECO:0000313|EMBL:AEF27360.1}; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
L3_072_362G1_scaffold_624_4
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3268..3741)
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve HPH0326 RepID=S2ZLC5_BIFBR
Uncharacterized protein {ECO:0000313|EMBL:EPD75175.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
putative TadV type IV secretion peptidase
L3_072_362G1_scaffold_624_5
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3790..4977
DNA (1188bp) protein (396aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
Chorismate synthase n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2CAN7_BIFBR
Chorismate synthase
L3_072_362G1_scaffold_624_6
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5012..6634
DNA (1623bp) protein (541aa)
3-dehydroquinate synthase {ECO:0000313|EMBL:EFE89469.1}; EC=4.2.3.4 {ECO:0000313|EMBL:EFE89469.1};; Shikimate kinase/3-dehydroquinate synthase {ECO:0000313|EMBL:BAQ99902.1}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
aroB; Shikimate kinase/3-dehydroquinate synthase (EC:2.7.1.71 4.2.3.4)
3-dehydroquinate synthase n=1 Tax=Bifidobacterium breve DSM 20213 = JCM 1192 RepID=D4BP82_BIFBR
L3_072_362G1_scaffold_624_7
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6786..7232
DNA (447bp) protein (149aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752};; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; TaxID=1385940 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCM 7019.;"
3-dehydroquinate dehydratase n=1 Tax=Bifidobacterium breve (strain NCIMB 8807 / UCC2003) RepID=F9XZL0_BIFBU
3-dehydroquinate dehydratase
L3_072_362G1_scaffold_624_8
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7352..9016
DNA (1665bp) protein (555aa)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
CTP synthase n=1 Tax=Bifidobacterium breve DSM 20213 = JCM 1192 RepID=D4BP85_BIFBR
CTP synthase
L3_072_362G1_scaffold_624_9
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9177..10805
DNA (1629bp) protein (543aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve DSM 20213 = JCM 1192 RepID=D4BP86_BIFBR
Uncharacterized protein {ECO:0000313|EMBL:EFE89473.1}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
Hypothetical protein with ErfK/YbiS/YcfS/YnhG domain
L3_072_362G1_scaffold_624_10
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10984..12483
DNA (1500bp) protein (500aa)
FeS assembly protein SufB n=5 Tax=Bifidobacterium breve RepID=F6C9Q6_BIFBA
FeS assembly protein SufB
FeS assembly protein SufB {ECO:0000313|EMBL:AEF28049.1}; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
L3_072_362G1_scaffold_624_11
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12489..13724
DNA (1236bp) protein (412aa)
ATP-binding protein of ABC transporter system n=1 Tax=Bifidobacterium breve (strain NCIMB 8807 / UCC2003) RepID=F9XZL4_BIFBU
ATP-binding protein of ABC transporter system
ATP-binding protein of ABC transporter system {ECO:0000313|EMBL:ABE95592.1}; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
L3_072_362G1_scaffold_624_12
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13751..14530
DNA (780bp) protein (260aa)
FeS assembly ATPase SufC n=6 Tax=Bifidobacterium breve RepID=F6C9Q4_BIFBA
FeS assembly protein SufC
FeS assembly ATPase SufC {ECO:0000313|EMBL:AEF27914.1}; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
L3_072_362G1_scaffold_624_13
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14699..15973
DNA (1275bp) protein (425aa)
Cysteine desulfurase {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216}; EC=2.8.1.7 {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216};; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
Cysteine desulfurase n=1 Tax=Bifidobacterium breve (strain ACS-071-V-Sch8b) RepID=F6C9Q3_BIFBA
cysteine desulfurase, SufS family
L3_072_362G1_scaffold_624_14
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15985..16539
DNA (555bp) protein (185aa)
SUF system FeS assembly protein, NifU family n=5 Tax=Bifidobacterium breve RepID=F6C9Q2_BIFBA
IscU protein
NifU family SUF system FeS assembly protein {ECO:0000313|EMBL:EPD75165.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L3_072_362G1_scaffold_624_15
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16547..17131
DNA (585bp) protein (195aa)
Uncharacterized protein n=4 Tax=Bifidobacterium breve RepID=F6C9Q1_BIFBA
Hypothetical protein with DUF59 domain
Uncharacterized protein {ECO:0000313|EMBL:ERI87543.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
L3_072_362G1_scaffold_624_16
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17251..18495)
DNA (1245bp) protein (415aa)
Glucose-1-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565}; EC=2.7.7.27 {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565};; ADP-glucose pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00624}; ADP-glucose synthase {ECO:0000256|HAMAP-Rule:MF_00624}; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
Glucose-1-phosphate adenylyltransferase n=4 Tax=Bifidobacterium breve RepID=F6C9Q0_BIFBA
Glucose-1-phosphate adenylyltransferase
L3_072_362G1_scaffold_624_17
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18699..19577)
DNA (879bp) protein (293aa)
SpoU rRNA methylase family protein n=5 Tax=Bifidobacterium breve RepID=F9XZM0_BIFBU
SpoU rRNA methylase family protein
RNA methyltransferase, TrmH family {ECO:0000313|EMBL:ERI87540.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
L3_072_362G1_scaffold_624_18
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19784..20617
DNA (834bp) protein (278aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
Ribosomal RNA small subunit methyltransferase E n=1 Tax=Bifidobacterium breve (strain NCIMB 8807 / UCC2003) RepID=F9XZM1_BIFBU
Hypothetical protein with DUF558 domain, RNA methyl transferase
L3_072_362G1_scaffold_624_19
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20728..21066
DNA (339bp) protein (113aa)
Histidine triad domain protein n=6 Tax=Bifidobacterium breve RepID=F6C9P7_BIFBA
HIT family protein
Histidine triad domain protein {ECO:0000313|EMBL:AEF27661.1}; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
L3_072_362G1_scaffold_624_20
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21085..22269
DNA (1185bp) protein (395aa)
PhoH family protein n=2 Tax=Bifidobacterium breve RepID=F6C9P6_BIFBA
PhoH protein
PhoH protein {ECO:0000313|EMBL:AHJ21089.1}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L3_072_362G1_scaffold_624_21
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22259..22810
DNA (552bp) protein (184aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023089}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023108};; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
Endoribonuclease YbeY n=5 Tax=Bifidobacterium breve RepID=F9XZM4_BIFBU
Conserved hypothetical protein in uncharacterized protein family UPF0054
L3_072_362G1_scaffold_624_22
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22835..24268
DNA (1434bp) protein (478aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve HPH0326 RepID=S2ZYN3_BIFBR
putative membrane spanning protein with CBS and transporter associated domains
Uncharacterized protein {ECO:0000313|EMBL:EPD75157.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L3_072_362G1_scaffold_624_23
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24270..25277
DNA (1008bp) protein (336aa)
GTPase Era n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2CAL7_BIFBR
GTP-binding protein
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
L3_072_362G1_scaffold_624_24
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25351..27393)
DNA (2043bp) protein (681aa)
AMP-binding enzyme n=3 Tax=Bifidobacterium breve RepID=D4BPA2_BIFBR
Long-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:AHJ21093.1}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
Long-chain-fatty-acid--CoA ligase
Displaying 24 items

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