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L3_072_362G1_scaffold_595

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_362G1_scaffold_595_1
[Clostridium] celerecrescens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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97..378
DNA (282bp) protein (94aa)
Ferredoxin n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ETP6_9FIRM
Ferredoxin {ECO:0000313|EMBL:KEZ89375.1}; TaxID=29354 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] celerecrescens.;"
RnfABCDGE type electron transport complex subunit B
L3_072_362G1_scaffold_595_2
[Clostridium] celerecrescens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(428..1825)
DNA (1398bp) protein (466aa)
Uronate isomerase {ECO:0000256|HAMAP-Rule:MF_00675, ECO:0000256|SAAS:SAAS00013440}; EC=5.3.1.12 {ECO:0000256|HAMAP-Rule:MF_00675, ECO:0000256|SAAS:SAAS00013438};; Glucuronate isomerase {ECO:0000256|HAMAP-Rule:MF_00675}; Uronic isomerase {ECO:0000256|HAMAP-Rule:MF_00675}; TaxID=29354 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] celerecrescens.;"
glucuronate isomerase (EC:5.3.1.12)
Uronate isomerase n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9RAG9_CLOSW
L3_072_362G1_scaffold_595_3
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1853..2854)
DNA (1002bp) protein (334aa)
Transcriptional regulator, LacI family n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9RAH0_CLOSW
Transcriptional regulator, LacI family {ECO:0000313|EMBL:EXG86255.1}; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
LacI family transcriptional regulator
L3_072_362G1_scaffold_595_4
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3069..3830
DNA (762bp) protein (254aa)
Transcriptional regulator, IclR family n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9RAH1_CLOSW
Transcriptional regulator, IclR family {ECO:0000313|EMBL:EXG86256.1}; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
IclR family transcriptional regulator
L3_072_362G1_scaffold_595_5

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3940..4590
DNA (651bp) protein (217aa)
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9RAH2_CLOSW
Putative KDPG aldolase {ECO:0000313|EMBL:BAR73188.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
2-dehydro-3-deoxyphosphogluconate aldolase
L3_072_362G1_scaffold_595_6

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4625..5656
DNA (1032bp) protein (344aa)
2-dehydro-3-deoxygluconokinase n=2 Tax=Clostridium hathewayi RepID=N9W7U6_9CLOT
Putative KDG kinase {ECO:0000313|EMBL:BAR73182.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
PfkB domain-containing protein
L3_072_362G1_scaffold_595_7
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5754..6779
DNA (1026bp) protein (342aa)
PfkB domain protein n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9RAH4_CLOSW
Sugar kinase, ribokinase {ECO:0000313|EMBL:EXG86259.1}; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
PfkB domain-containing protein
L3_072_362G1_scaffold_595_8
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7169..8452
DNA (1284bp) protein (428aa)
Extracellular solute-binding protein family 1 n=1 Tax=Thermotoga sp. EMP RepID=J9H2U8_9THEM
Carbohydrate ABC transporter substrate-binding protein, CUT1 family {ECO:0000313|EMBL:EXG86260.1}; Flags: Precursor;; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
extracellular solute-binding protein family 1
L3_072_362G1_scaffold_595_9
[Clostridium] celerecrescens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8475..9395
DNA (921bp) protein (307aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Caldicellulosiruptor hydrothermalis (strain DSM 18901 / VKM B-2411 / 108) RepID=E4QCE0_CALH1
Uncharacterized protein {ECO:0000313|EMBL:KEZ89363.1}; TaxID=29354 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] celerecrescens.;"
binding-protein-dependent transport systems inner membrane component
L3_072_362G1_scaffold_595_10
[Clostridium] celerecrescens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9408..10259
DNA (852bp) protein (284aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Caldicellulosiruptor hydrothermalis (strain DSM 18901 / VKM B-2411 / 108) RepID=E4QCE1_CALH1
ABC transporter permease {ECO:0000313|EMBL:KEZ89362.1}; TaxID=29354 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] celerecrescens.;"
binding-protein-dependent transport systems inner membrane component
L3_072_362G1_scaffold_595_11
[Clostridium] celerecrescens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10294..11325
DNA (1032bp) protein (344aa)
hypothetical protein n=1 Tax=Geobacillus caldoxylosilyticus RepID=UPI0002F8A529
Uncharacterized protein {ECO:0000313|EMBL:KEZ89361.1}; TaxID=29354 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] celerecrescens.;"
LacI family transcriptional regulator
L3_072_362G1_scaffold_595_12
[Clostridium] celerecrescens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11356..13302
DNA (1947bp) protein (649aa)
Uncharacterized protein conserved in bacteria n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KPI5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KEZ89360.1}; TaxID=29354 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] celerecrescens.;"
hypothetical protein
L3_072_362G1_scaffold_595_13
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13426..14199)
DNA (774bp) protein (258aa)
ABC transporter related protein n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9RAH6_CLOSW
ABC transporter
ABC transporter related protein {ECO:0000313|EMBL:ADL04254.1}; TaxID=610130 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533; / WM1).;"
L3_072_362G1_scaffold_595_14
[Clostridium] celerecrescens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14192..15076)
DNA (885bp) protein (295aa)
Inner-membrane translocator n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9RAH7_CLOSW
ABC transporter {ECO:0000313|EMBL:KEZ89358.1}; TaxID=29354 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] celerecrescens.;"
inner-membrane translocator
L3_072_362G1_scaffold_595_15
[Clostridium] celerecrescens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15117..16130)
DNA (1014bp) protein (338aa)
Putative uncharacterized protein n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9RAH8_CLOSW
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KEZ89357.1}; TaxID=29354 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] celerecrescens.;"
hypothetical protein
L3_072_362G1_scaffold_595_16
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16671..17183
DNA (513bp) protein (171aa)
Isochorismatase hydrolase n=1 Tax=gut metagenome RepID=J9GV02_9ZZZZ
Nicotinamidase-like amidase {ECO:0000313|EMBL:EXG86269.1}; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
isochorismatase hydrolase
L3_072_362G1_scaffold_595_17
[Clostridium] celerecrescens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17358..18635)
DNA (1278bp) protein (426aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; TaxID=29354 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] celerecrescens.;"
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9RAI0_CLOSW
3-phosphoshikimate 1-carboxyvinyltransferase
L3_072_362G1_scaffold_595_18
[Clostridium] celerecrescens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18649..19746)
DNA (1098bp) protein (366aa)
prephenate dehydrogenase (EC:1.3.1.12)
Prephenate dehydrogenase n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9RAI1_CLOSW
Prephenate dehydrogenase {ECO:0000313|EMBL:KEZ89353.1}; TaxID=29354 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] celerecrescens.;"
L3_072_362G1_scaffold_595_19
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19743..20759)
DNA (1017bp) protein (339aa)
Phospho-2-dehydro-3-deoxyheptonate aldolase n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9RAI2_CLOSW
phospho-2-dehydro-3-deoxyheptonate aldolase
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000313|EMBL:ADL04260.1}; TaxID=610130 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533; / WM1).;"
L3_072_362G1_scaffold_595_20
[Clostridium] celerecrescens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21171..22151
DNA (981bp) protein (327aa)
Reverse transcriptase (RNA-dependent DNA polymerase). (EC:2.7.7.49)
RNA-directed DNA polymerase n=1 Tax=Clostridium hathewayi CAG:224 RepID=R5SZF1_9CLOT
DNA polymerase {ECO:0000313|EMBL:KEZ89352.1}; TaxID=29354 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] celerecrescens.;"
L3_072_362G1_scaffold_595_21
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22195..22587
DNA (393bp) protein (131aa)
Cell wall-binding repeat protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=D3ALZ3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY92250.1}; TaxID=999412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi 12489931.;"
Cysteine-rich secretory protein family./Putative cell wall binding repeat.
L3_072_362G1_scaffold_595_22
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22743..24845
DNA (2103bp) protein (701aa)
Small GTP-binding protein n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9RAJ1_CLOSW
Small GTP-binding protein {ECO:0000313|EMBL:ADL04269.1}; TaxID=610130 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533; / WM1).;"
small GTP-binding protein
L3_072_362G1_scaffold_595_23
[Clostridium] celerecrescens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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24996..25913
DNA (918bp) protein (306aa)
Abortive infection protein n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9RAK2_CLOSW
CAAX protease {ECO:0000313|EMBL:KEZ89341.1}; TaxID=29354 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] celerecrescens.;"
abortive infection protein
L3_072_362G1_scaffold_595_24
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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26305..28149
DNA (1845bp) protein (615aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
Leucine--tRNA ligase n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9RAK3_CLOSW
leucyl-tRNA synthetase
Displaying 24 items

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