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L3_079_000G1_scaffold_6

Search features with annotation key words

Displaying items 1-30 of 253 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_000G1_scaffold_6_1
Clostridium bolteae CAG:59, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(195..1691)
DNA (1497bp) protein (499aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=1263064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bolteae CAG:59.;"
lysS; lysyl-tRNA synthetase (EC:6.1.1.6)
Lysine--tRNA ligase n=1 Tax=Clostridium bolteae CAG:59 RepID=R5F0C5_9CLOT
L3_079_000G1_scaffold_6_2
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1716..2198)
DNA (483bp) protein (161aa)
Transcription elongation factor GreA n=15 Tax=Clostridium RepID=G5HCK7_9CLOT
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
GreA/GreB family elongation factor
L3_079_000G1_scaffold_6_3
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2304..3269)
DNA (966bp) protein (322aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=999407 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A7.;"
tRNA-dihydrouridine synthase n=6 Tax=Clostridium RepID=A8RX58_9CLOT
tRNA-U20-dihydrouridine synthase
L3_079_000G1_scaffold_6_4
Clostridium bolteae CAG:59, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3270..3620)
DNA (351bp) protein (117aa)
Uncharacterized protein n=4 Tax=Clostridium RepID=N9X4W8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX98250.1}; TaxID=1263064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bolteae CAG:59.;"
hypothetical protein
L3_079_000G1_scaffold_6_5
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3703..4677)
DNA (975bp) protein (325aa)
ATP-dependent 6-phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339}; Short=ATP-PFK {ECO:0000256|HAMAP-Rule:MF_00339};; Short=Phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339};; EC=2.7.1.11 {ECO:0000256|HAMAP-Rule:MF_00339};; Phosphohexokinase {ECO:0000256|HAMAP-Rule:MF_00339}; TaxID=999407 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A7.;"
6-phosphofructokinase n=8 Tax=Clostridium RepID=A8RX61_9CLOT
6-phosphofructokinase
L3_079_000G1_scaffold_6_6
Clostridium bolteae CAG:59, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4770..8255)
DNA (3486bp) protein (1162aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=1263064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bolteae CAG:59.;"
DNA polymerase III subunit alpha (EC:2.7.7.7)
DNA polymerase III, alpha subunit n=3 Tax=Clostridium RepID=R0BFF2_9CLOT
L3_079_000G1_scaffold_6_7
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8388..8642)
DNA (255bp) protein (85aa)
Uncharacterized protein n=18 Tax=Clostridium RepID=A8RX64_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB61414.1}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
Phosphotransferase System HPr (HPr) Family
L3_079_000G1_scaffold_6_8
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8764..9741)
DNA (978bp) protein (326aa)
Putative sporulation transcription regulator WhiA n=8 Tax=Clostridium RepID=A8RX66_9CLOT
Putative sporulation transcription regulator WhiA {ECO:0000256|HAMAP-Rule:MF_01420, ECO:0000256|SAAS:SAAS00005305}; TaxID=411902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium bolteae (strain ATCC BAA-613 / WAL 16351).;"
hypothetical protein
L3_079_000G1_scaffold_6_9
Clostridium bolteae CAG:59, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9747..10616)
DNA (870bp) protein (290aa)
UPF0042 nucleotide-binding protein HMPREF1082_04713 n=4 Tax=Clostridium RepID=N9X4X3_9CLOT
Nucleotide-binding protein BN723_03122 {ECO:0000256|HAMAP-Rule:MF_00636}; TaxID=1263064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bolteae CAG:59.;"
hypothetical protein
L3_079_000G1_scaffold_6_10
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10646..11563)
DNA (918bp) protein (306aa)
UDP-N-acetylenolpyruvoylglucosamine reductase {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00041869}; EC=1.3.1.98 {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00057125};; UDP-N-acetylmuramate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00037}; TaxID=999407 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A7.;"
UDP-N-acetylenolpyruvoylglucosamine reductase (EC:1.1.1.158)
UDP-N-acetylenolpyruvoylglucosamine reductase n=2 Tax=Clostridium RepID=N9YRI4_9CLOT
L3_079_000G1_scaffold_6_11
Clostridium bolteae CAG:59, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11584..12516)
DNA (933bp) protein (311aa)
HPr kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058411}; Short=HPrK/P {ECO:0000256|HAMAP-Rule:MF_01249};; EC=2.7.11.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058427};; EC=2.7.4.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058435};; HPr(Ser) kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249}; TaxID=1263064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bolteae CAG:59.;"
HPr kinase/phosphorylase n=8 Tax=Clostridium RepID=A8RX69_9CLOT
HPr kinase
L3_079_000G1_scaffold_6_12
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12601..14580)
DNA (1980bp) protein (660aa)
UvrABC system protein C n=2 Tax=Clostridium bolteae RepID=R0AGN4_9CLOT
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
excinuclease ABC subunit C
L3_079_000G1_scaffold_6_13
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14647..16044)
DNA (1398bp) protein (466aa)
Uncharacterized protein n=2 Tax=Clostridium bolteae RepID=R0AH32_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ51396.1}; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
hypothetical protein
L3_079_000G1_scaffold_6_14
Clostridium bolteae CAG:59, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16387..18006)
DNA (1620bp) protein (540aa)
Uncharacterized protein n=1 Tax=Clostridium bolteae CAG:59 RepID=R5EZP8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX98240.1}; TaxID=1263064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bolteae CAG:59.;"
mannitol dehydrogenase
L3_079_000G1_scaffold_6_15
Clostridium bolteae CAG:59, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17994..18173)
DNA (180bp) protein (60aa)
Uncharacterized protein n=4 Tax=Clostridium RepID=N9YRI8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX98239.1}; TaxID=1263064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bolteae CAG:59.;"
L3_079_000G1_scaffold_6_16
Clostridium bolteae CAG:59, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18232..18381)
DNA (150bp) protein (50aa)
Uncharacterized protein n=8 Tax=Clostridium RepID=A8RX76_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX98238.1}; TaxID=1263064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bolteae CAG:59.;"
L3_079_000G1_scaffold_6_17
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18810..19028
DNA (219bp) protein (73aa)
Transcriptional regulator n=7 Tax=Clostridium RepID=N9YQ80_9CLOT
Transcriptional regulator {ECO:0000313|EMBL:ENZ34839.1}; TaxID=997897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90B8.;"
Predicted transcriptional regulator
L3_079_000G1_scaffold_6_18
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19087..19773)
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme 90A7 RepID=N9X5H5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ10415.1}; TaxID=999407 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A7.;"
membrane protein
L3_079_000G1_scaffold_6_19
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20013..21461)
DNA (1449bp) protein (483aa)
beta-fructofuranosidase (EC:3.2.1.26)
Sucrose-6-phosphate hydrolase n=1 Tax=Clostridium clostridioforme 90A7 RepID=N9X4Y5_9CLOT
Sucrose-6-phosphate hydrolase {ECO:0000313|EMBL:ENZ10416.1}; TaxID=999407 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A7.;"
L3_079_000G1_scaffold_6_20
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21522..23498)
DNA (1977bp) protein (659aa)
PTS system, sucrose-specific IIBC component n=1 Tax=Clostridium clostridioforme 90A7 RepID=N9YRJ2_9CLOT
PTS system, sucrose-specific IIBC component {ECO:0000313|EMBL:ENZ10417.1}; TaxID=999407 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A7.;"
PTS system sucrose-specific IIA component, Glc family (TC 4.A.1.2.12)/PTS system sucrose-specific IIB component, Glc family (TC 4.A.1.2.12)/PTS system sucrose-specific IIC component, Glc family (TC 4.A.1.2.12)
L3_079_000G1_scaffold_6_21
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23684..24682)
DNA (999bp) protein (333aa)
Sucrose operon repressor n=4 Tax=Clostridium RepID=N9YEU6_9CLOT
Sucrose operon repressor {ECO:0000313|EMBL:ENZ51404.1}; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
transcriptional regulator, LacI family
L3_079_000G1_scaffold_6_22
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24904..25263)
DNA (360bp) protein (120aa)
Uncharacterized protein n=7 Tax=Clostridium RepID=A8RMG5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDP17660.1}; TaxID=411902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium bolteae (strain ATCC BAA-613 / WAL 16351).;"
Predicted membrane protein
L3_079_000G1_scaffold_6_23
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25269..25721)
DNA (453bp) protein (151aa)
Uncharacterized protein n=4 Tax=Clostridium RepID=N9X5H9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ51406.1}; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
hypothetical protein
L3_079_000G1_scaffold_6_24
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26161..26853
DNA (693bp) protein (231aa)
aspartate racemase (EC:5.1.1.13)
Aspartate racemase n=1 Tax=Clostridium clostridioforme 90A7 RepID=N9X4Z1_9CLOT
Aspartate racemase {ECO:0000313|EMBL:ENZ10421.1}; TaxID=999407 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A7.;"
L3_079_000G1_scaffold_6_25
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26926..27687
DNA (762bp) protein (254aa)
Beta-lactamase n=1 Tax=Clostridium clostridioforme 90A7 RepID=N9YRJ6_9CLOT
Beta-lactamase {ECO:0000313|EMBL:ENZ10422.1}; TaxID=999407 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A7.;"
beta-lactamase
L3_079_000G1_scaffold_6_26
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28353..28643
DNA (291bp) protein (97aa)
Uncharacterized protein n=4 Tax=Clostridium RepID=N9YEV3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ51409.1}; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
hypothetical protein
L3_079_000G1_scaffold_6_27
Clostridium bolteae CAG:59, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28730..29425)
DNA (696bp) protein (232aa)
Uncharacterized protein n=5 Tax=Clostridium RepID=N9YQ91_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX98226.1}; TaxID=1263064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bolteae CAG:59.;"
spore cortex-lytic protein
L3_079_000G1_scaffold_6_28
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29581..30375)
DNA (795bp) protein (265aa)
cca; tRNA nucleotidyltransferase (EC:2.7.7.-)
Uncharacterized protein n=2 Tax=Clostridium bolteae RepID=R0AH44_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ51411.1}; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
L3_079_000G1_scaffold_6_29
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30365..31393)
DNA (1029bp) protein (343aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme 90A7 RepID=N9X4Z5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ10426.1}; TaxID=999407 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A7.;"
Predicted nucleotidyltransferase
L3_079_000G1_scaffold_6_30
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31521..31745)
DNA (225bp) protein (75aa)
Uncharacterized protein n=5 Tax=Clostridium RepID=N9YRJ9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ51413.1}; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
Displaying items 1-30 of 253 in total

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