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L3_079_000G1_scaffold_38

Search features with annotation key words

Displaying items 1-30 of 177 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_000G1_scaffold_38_1
unknown

Not on your lists

2..169
DNA (168bp) protein (56aa)
N-acetylmuramoyl-L-alanine amidase
L3_079_000G1_scaffold_38_2
Firmicutes bacterium ASF500, Firmicutes, Bacteria

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233..1000
DNA (768bp) protein (256aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2Y7R1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL12463.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
peptidase propeptide and YPEB domain protein
L3_079_000G1_scaffold_38_3
unknown

Not on your lists

comp(1075..1710)
DNA (636bp) protein (212aa)

This feature has no annotations

L3_079_000G1_scaffold_38_4
Desulfosporosinus meridiei, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1826..2053)
DNA (228bp) protein (76aa)
hypothetical protein n=1 Tax=Anaeromusa acidaminophila RepID=UPI000369324C
competence-specific genes regulator
Regulator of competence-specific genes {ECO:0000313|EMBL:AFQ43836.1}; TaxID=768704 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus meridiei (strain ATCC BAA-275 / DSM 13257 / NCIMB; 13706 / S10).;"
L3_079_000G1_scaffold_38_5
Treponema lecithinolyticum, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(2217..2528)
DNA (312bp) protein (104aa)
Thioredoxin n=1 Tax=Treponema lecithinolyticum ATCC 700332 RepID=U2KPU6_TRELE
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=1321815 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema lecithinolyticum ATCC 700332.;"
trxA; thioredoxin-1
L3_079_000G1_scaffold_38_6
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2582..3964)
DNA (1383bp) protein (461aa)
Penicillin-binding protein, transpeptidase domain protein n=1 Tax=Clostridium sp. MSTE9 RepID=J0N1H6_9CLOT
Penicillin-binding protein, transpeptidase domain protein {ECO:0000313|EMBL:EJF40594.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
putative penicillin-binding protein A
L3_079_000G1_scaffold_38_7
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3961..5655)
DNA (1695bp) protein (565aa)
FHA domain protein n=1 Tax=Clostridium sp. MSTE9 RepID=J1H532_9CLOT
FHA domain protein {ECO:0000313|EMBL:EJF40625.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
hypothetical protein
L3_079_000G1_scaffold_38_8
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5864..6736)
DNA (873bp) protein (291aa)
Pyridoxal kinase {ECO:0000256|SAAS:SAAS00088591}; EC=2.7.1.35 {ECO:0000256|SAAS:SAAS00088591};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
pyridoxal kinase n=1 Tax=Clostridium sporosphaeroides RepID=UPI000368BBF9
pyridoxal kinase
L3_079_000G1_scaffold_38_9
Clostridium sp. CAG:356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6837..7508)
DNA (672bp) protein (224aa)
Putative UDP-N-acetylglucosamine diphosphorylase n=1 Tax=Clostridium sp. CAG:356 RepID=R6YTT6_9CLOT
Putative UDP-N-acetylglucosamine diphosphorylase {ECO:0000313|EMBL:CDD37305.1}; TaxID=1262800 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:356.;"
hypothetical protein
L3_079_000G1_scaffold_38_10
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7845..8798
DNA (954bp) protein (318aa)
4-phosphoerythronate dehydrogenase n=1 Tax=Clostridium leptum CAG:27 RepID=R6N1K6_9CLOT
4-phosphoerythronate dehydrogenase {ECO:0000313|EMBL:CDC04910.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
glycerate dehydrogenase
L3_079_000G1_scaffold_38_11
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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9012..10154
DNA (1143bp) protein (381aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RXI7_9FIRM
Group 1 glycosyl transferase {ECO:0000313|EMBL:KJF39521.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
group 1 glycosyl transferase
L3_079_000G1_scaffold_38_12
Acholeplasma palmae, Acholeplasma, Acholeplasmatales, Mollicutes, Tenericutes, Bacteria

Not on your lists

10144..11172
DNA (1029bp) protein (343aa)
Glycosyl transferase group 1 n=1 Tax=Acholeplasma palmae (strain ATCC 49389 / J233) RepID=U4KNE3_ACHPJ
Glycosyl transferase group 1
Glycosyl transferase group 1 {ECO:0000313|EMBL:CCV63700.1}; TaxID=38986 species="Bacteria; Tenericutes; Mollicutes; Acholeplasmatales; Acholeplasmataceae; Acholeplasma.;" source="Acholeplasma palmae.;"
L3_079_000G1_scaffold_38_13
Anaerococcus lactolyticus, Anaerococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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11665..11967
DNA (303bp) protein (101aa)
Urease subunit gamma {ECO:0000256|HAMAP-Rule:MF_00739, ECO:0000256|RuleBase:RU003850}; EC=3.5.1.5 {ECO:0000256|HAMAP-Rule:MF_00739, ECO:0000256|RuleBase:RU003850};; Urea amidohydrolase subunit gamma {ECO:0000256|HAMAP-Rule:MF_00739}; TaxID=1284686 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Anaerococcus.;" source="Anaerococcus lactolyticus S7-1-13.;"
urease subunit gamma (EC:3.5.1.5)
Urease subunit gamma n=3 Tax=Anaerococcus RepID=C2BCZ6_9FIRM
L3_079_000G1_scaffold_38_14
Helicobacter mustelae, Helicobacter, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

11987..12346
DNA (360bp) protein (120aa)
Urease subunit alpha {ECO:0000256|HAMAP-Rule:MF_01955}; EC=3.5.1.5 {ECO:0000256|HAMAP-Rule:MF_01955};; Urea amidohydrolase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01955}; TaxID=679897 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter.;" source="Helicobacter mustelae (strain ATCC 43772 / LMG 18044 / NCTC 12198 /; 12198) (Campylobacter mustelae).;"
Urease subunit alpha n=2 Tax=Helicobacter mustelae RepID=D3UGE6_HELM1
ureA; urease subunits beta and gamma
L3_079_000G1_scaffold_38_15
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12389..14110
DNA (1722bp) protein (574aa)
Urease subunit alpha {ECO:0000256|HAMAP-Rule:MF_01953}; EC=3.5.1.5 {ECO:0000256|HAMAP-Rule:MF_01953, ECO:0000256|SAAS:SAAS00033844};; Urea amidohydrolase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01953}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
Urease subunit alpha n=1 Tax=Clostridium butyricum DKU-01 RepID=M8JMF5_CLOBU
UreC; urea amidohydrolase
L3_079_000G1_scaffold_38_16
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14444..15187)
DNA (744bp) protein (248aa)
Carbonic anhydrase {ECO:0000256|RuleBase:RU003956}; EC=4.2.1.1 {ECO:0000256|RuleBase:RU003956};; TaxID=1233171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 638.;"
carbonic anhydrase n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2F656
carbonic anhydrase
L3_079_000G1_scaffold_38_17
unknown

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comp(15803..15949)
DNA (147bp) protein (49aa)

This feature has no annotations

L3_079_000G1_scaffold_38_18
unknown

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16107..16217
DNA (111bp) protein (37aa)

This feature has no annotations

L3_079_000G1_scaffold_38_19
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

Not on your lists

16218..17600
DNA (1383bp) protein (461aa)
23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6ZBP6_9FIRM
23S rRNA (Uracil-5-)-methyltransferase RumA {ECO:0000313|EMBL:CDD27902.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
23S rRNA (uracil-5-)-methyltransferase RumA
L3_079_000G1_scaffold_38_20
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17782..19587)
DNA (1806bp) protein (602aa)
ABC transporter, ATP-binding protein n=1 Tax=Clostridium sp. KLE 1755 RepID=U2AWJ0_9CLOT
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ERI70189.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
ABC transporter
L3_079_000G1_scaffold_38_21
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19580..21295)
DNA (1716bp) protein (572aa)
ATP-binding cassette, subfamily B, bacterial n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7K3F8_9FIRM
ATP-binding cassette, subfamily B, bacterial {ECO:0000313|EMBL:EGN33532.2}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
ABC transporter
L3_079_000G1_scaffold_38_22
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21302..21730)
DNA (429bp) protein (143aa)
Transcriptional regulator, MarR family n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CZ43_9CLOT
Transcriptional regulator, MarR family {ECO:0000313|EMBL:EEG55659.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
hypothetical protein
L3_079_000G1_scaffold_38_23
unknown

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comp(21886..22140)
DNA (255bp) protein (85aa)

This feature has no annotations

L3_079_000G1_scaffold_38_24
Firmicutes bacterium CAG:646, Firmicutes, Bacteria

Not on your lists

comp(22298..23653)
DNA (1356bp) protein (452aa)
Transporter n=1 Tax=Firmicutes bacterium CAG:646 RepID=R5R1R3_9FIRM
Transporter {ECO:0000256|RuleBase:RU003732}; TaxID=1262995 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:646.;"
Na+-dependent transporter
L3_079_000G1_scaffold_38_25
Firmicutes bacterium CAG:646, Firmicutes, Bacteria

Not on your lists

comp(23847..25202)
DNA (1356bp) protein (452aa)
Transporter n=1 Tax=Firmicutes bacterium CAG:646 RepID=R5R1R3_9FIRM
Transporter {ECO:0000256|RuleBase:RU003732}; TaxID=1262995 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:646.;"
Na+-dependent transporter
L3_079_000G1_scaffold_38_26
Erysipelatoclostridium ramosum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

25525..25956
DNA (432bp) protein (144aa)
Isochorismatase family protein {ECO:0000313|EMBL:EDS20098.1}; EC=3.-.-.- {ECO:0000313|EMBL:EDS20098.1};; TaxID=445974 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Erysipelatoclostridium ramosum DSM 1402.;"
Isochorismatase family protein n=1 Tax=Clostridium ramosum DSM 1402 RepID=B0N0R6_9FIRM
acetyltransferase
L3_079_000G1_scaffold_38_27
Mogibacterium sp. CM50, Mogibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26129..26533
DNA (405bp) protein (135aa)
Nucleoside diphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00451, ECO:0000256|RuleBase:RU004013}; Short=NDK {ECO:0000256|HAMAP-Rule:MF_00451};; Short=NDP kinase {ECO:0000256|HAMAP-Rule:MF_00451};; EC=2.7.4.6 {ECO:0000256|HAMAP-Rule:MF_00451, ECO:0000256|RuleBase:RU004013};; Nucleoside-2-P kinase {ECO:0000256|HAMAP-Rule:MF_00451}; TaxID=936375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XIII. Incertae Sedis; Mogibacterium.;" source="Mogibacterium sp. CM50.;"
ndk; nucleoside diphosphate kinase (EC:2.7.4.6)
Nucleoside diphosphate kinase n=1 Tax=Mogibacterium sp. CM50 RepID=J6HKJ4_9FIRM
L3_079_000G1_scaffold_38_28
Paenibacillus beijingensis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(26593..28077)
DNA (1485bp) protein (495aa)
glycosyl transferase family 1 n=1 Tax=Paenibacillus sp. OSY-SE RepID=UPI0002FB6C7F
glycosyl transferase family 1
Glycosyl transferase family 1 {ECO:0000313|EMBL:AJY76957.1}; TaxID=1126833 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus beijingensis.;"
L3_079_000G1_scaffold_38_29
[Eubacterium] hallii, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28358..29200)
DNA (843bp) protein (281aa)
thiamine-phosphate pyrophosphorylase, putative n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C37322
Putative thiamine-phosphate diphosphorylase {ECO:0000313|EMBL:EEG36813.1}; TaxID=411469 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="[Eubacterium] hallii DSM 3353.;"
hypothetical protein
L3_079_000G1_scaffold_38_30
Clostridium sp. HMP27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(29211..30374)
DNA (1164bp) protein (388aa)
Thiazole biosynthesis protein ThiH n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8VYV0_9CLOT
Thiamine biosynthesis protein ThiH {ECO:0000313|EMBL:KGK89510.1}; TaxID=1487921 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HMP27.;"
thiH1; thiazole biosynthesis protein ThiH1
Displaying items 1-30 of 177 in total

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