ggKbase home page

L3_079_000G1_scaffold_55

Search features with annotation key words

Displaying items 1-30 of 171 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_000G1_scaffold_55_1
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2..220)
DNA (219bp) protein (73aa)
Rubrerythrin n=6 Tax=Clostridium RepID=N9X4D6_9CLOT
Rubrerythrin {ECO:0000313|EMBL:ENZ10171.1}; TaxID=999407 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A7.;"
Rubrerythrin
L3_079_000G1_scaffold_55_2
Clostridium bolteae CAG:59, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(344..760)
DNA (417bp) protein (139aa)
Uncharacterized protein n=8 Tax=Clostridium RepID=A8RLK0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX98920.1}; TaxID=1263064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bolteae CAG:59.;"
ferric uptake regulator family protein
L3_079_000G1_scaffold_55_3
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(909..1874)
DNA (966bp) protein (322aa)
LysR family transcriptional regulator n=4 Tax=Clostridium RepID=N9YPM4_9CLOT
LysR family transcriptional regulator {ECO:0000313|EMBL:ENZ10169.1}; TaxID=999407 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A7.;"
LysR family transcriptional regulator
L3_079_000G1_scaffold_55_4
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1871..2695)
DNA (825bp) protein (275aa)
Hydrolase n=2 Tax=Clostridium bolteae RepID=R0AYQ8_9CLOT
Hydrolase {ECO:0000313|EMBL:ENZ48209.1}; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
PHP domain-containing protein
L3_079_000G1_scaffold_55_5
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


2908..3684
DNA (777bp) protein (259aa)
Uncharacterized protein n=6 Tax=Clostridium RepID=A8RLK3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ35415.1}; TaxID=997897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90B8.;"
Ribosomal protein S1
L3_079_000G1_scaffold_55_6
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3708..4367
DNA (660bp) protein (220aa)
RelA/SpoT protein n=4 Tax=Clostridium RepID=N9X4D0_9CLOT
RelA/SpoT protein {ECO:0000313|EMBL:ENZ48207.1}; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
hypothetical protein
L3_079_000G1_scaffold_55_7
Clostridium bolteae CAG:59, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4368..6170
DNA (1803bp) protein (601aa)
Uncharacterized protein n=1 Tax=Clostridium bolteae CAG:59 RepID=R5F382_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX99480.1}; TaxID=1263064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bolteae CAG:59.;"
glycerophosphoryl diester phosphodiesterase
L3_079_000G1_scaffold_55_8
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6187..6642
DNA (456bp) protein (152aa)
D-aminoacyl-tRNA deacylase {ECO:0000256|HAMAP-Rule:MF_00518}; EC=3.1.1.96 {ECO:0000256|HAMAP-Rule:MF_00518};; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
D-tyrosyl-tRNA(Tyr) deacylase (EC:3.1.-.-)
D-tyrosyl-tRNA(Tyr) deacylase n=17 Tax=Clostridium RepID=A8RLK6_9CLOT
L3_079_000G1_scaffold_55_9
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6733..7197
DNA (465bp) protein (155aa)
Uncharacterized protein n=3 Tax=Clostridium bolteae RepID=N9Z6A7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ35411.1}; TaxID=997897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90B8.;"
hypothetical protein
L3_079_000G1_scaffold_55_10
Clostridium bolteae CAG:59, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7194..8621
DNA (1428bp) protein (476aa)
Uncharacterized protein n=1 Tax=Clostridium bolteae CAG:59 RepID=R5FFG6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX99477.1}; TaxID=1263064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bolteae CAG:59.;"
hypothetical protein
L3_079_000G1_scaffold_55_11
Clostridium bolteae CAG:59, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8666..10195
DNA (1530bp) protein (510aa)
Uncharacterized protein n=1 Tax=Clostridium bolteae CAG:59 RepID=R5FH38_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX99476.1}; TaxID=1263064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bolteae CAG:59.;"
ATPase
L3_079_000G1_scaffold_55_12
Clostridium bolteae CAG:59, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10349..11593)
DNA (1245bp) protein (415aa)
Sodium:dicarboxylate symporter n=3 Tax=Clostridium RepID=N9ZBH6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX99475.1}; TaxID=1263064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bolteae CAG:59.;"
hypothetical protein
L3_079_000G1_scaffold_55_13
Clostridium bolteae CAG:59, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12000..13550
DNA (1551bp) protein (517aa)
Uncharacterized protein n=1 Tax=Clostridium bolteae CAG:59 RepID=R5F7D4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX99474.1}; TaxID=1263064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bolteae CAG:59.;"
efflux pump
L3_079_000G1_scaffold_55_14
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13753..15075
DNA (1323bp) protein (441aa)
MATE efflux family protein n=2 Tax=Clostridium bolteae RepID=R0AYS5_9CLOT
MATE efflux family protein {ECO:0000313|EMBL:ENZ48199.1}; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
MATE efflux family protein
L3_079_000G1_scaffold_55_15
Clostridium bolteae CAG:59, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15248..15958
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Clostridium bolteae CAG:59 RepID=R5FFF9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX99472.1}; TaxID=1263064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bolteae CAG:59.;"
hypothetical protein
L3_079_000G1_scaffold_55_16
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16043..17359
DNA (1317bp) protein (439aa)
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00220, ECO:0000256|SAAS:SAAS00252556}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00220};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00220};; TaxID=999407 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A7.;"
Dihydroorotase n=3 Tax=Clostridium RepID=N9X4B9_9CLOT
dihydroorotase
L3_079_000G1_scaffold_55_17
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17334..18029
DNA (696bp) protein (232aa)
HAD superfamily (subfamily IA) hydrolase, TIGR02254 (EC:3.8.1.2)
HAD hydrolase n=2 Tax=Clostridium bolteae RepID=N9ZBI2_9CLOT
HAD hydrolase {ECO:0000313|EMBL:ENZ48196.1}; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
L3_079_000G1_scaffold_55_18
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18204..19115
DNA (912bp) protein (304aa)
Polar amino acid ABC transporter substrate-binding protein n=3 Tax=Clostridium RepID=N9YPK6_9CLOT
Polar amino acid ABC transporter substrate-binding protein {ECO:0000313|EMBL:ENZ48195.1}; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-)
L3_079_000G1_scaffold_55_19
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19218..19877
DNA (660bp) protein (220aa)
Uncharacterized protein n=8 Tax=Clostridium RepID=A8RLM1_9CLOT
His/Glu/Gln/Arg/opine family amino ABC transporter, permease, 3-TM region {ECO:0000313|EMBL:ENZ48194.1}; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
amino acid ABC transporter membrane protein, PAAT family (TC 3.A.1.3.-)
L3_079_000G1_scaffold_55_20
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19898..20662
DNA (765bp) protein (255aa)
amino acid ABC transporter ATP-binding protein, PAAT family (TC 3.A.1.3.-) (EC:3.6.3.- 3.6.3.21)
Uncharacterized protein n=8 Tax=Clostridium RepID=A8RLM2_9CLOT
Polar amino acid ABC transporter ATP-binding protein {ECO:0000313|EMBL:ENZ10152.1}; TaxID=999407 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A7.;"
L3_079_000G1_scaffold_55_21
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20877..21551
DNA (675bp) protein (225aa)
AroM family protein n=3 Tax=Clostridium RepID=N9X4B1_9CLOT
AroM family protein {ECO:0000313|EMBL:ENZ48192.1}; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
AroM protein.
L3_079_000G1_scaffold_55_22
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21766..22953
DNA (1188bp) protein (396aa)
amidohydrolase (EC:3.5.1.32)
Amidohydrolase n=3 Tax=Clostridium RepID=N9X4Q9_9CLOT
Amidohydrolase {ECO:0000313|EMBL:ENZ10150.1}; TaxID=999407 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A7.;"
L3_079_000G1_scaffold_55_23
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23063..24715
DNA (1653bp) protein (551aa)
Oligopeptide ABC transporter substrate-binding protein n=2 Tax=Clostridium bolteae RepID=N9ZBE8_9CLOT
Oligopeptide ABC transporter substrate-binding protein {ECO:0000313|EMBL:ENZ48190.1}; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
ABC-type dipeptide transport system, periplasmic component
L3_079_000G1_scaffold_55_24
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24821..25774
DNA (954bp) protein (318aa)
Peptide/nickel ABC transporter permease n=3 Tax=Clostridium RepID=N9YE63_9CLOT
Peptide/nickel ABC transporter permease {ECO:0000313|EMBL:ENZ10148.1}; TaxID=999407 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A7.;"
oligopeptide transport system permease AppB
L3_079_000G1_scaffold_55_25
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25775..26674
DNA (900bp) protein (300aa)
Uncharacterized protein n=7 Tax=Clostridium RepID=A8RLM8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDP18024.1}; TaxID=411902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium bolteae (strain ATCC BAA-613 / WAL 16351).;"
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
L3_079_000G1_scaffold_55_26
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26677..27861
DNA (1185bp) protein (395aa)
amidohydrolase (EC:3.5.1.14)
Amidohydrolase n=2 Tax=Clostridium bolteae RepID=R0AWT7_9CLOT
Amidohydrolase {ECO:0000313|EMBL:ENZ48187.1}; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
L3_079_000G1_scaffold_55_27
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27873..28892
DNA (1020bp) protein (340aa)
Uncharacterized protein n=5 Tax=Clostridium RepID=A8RLN0_9CLOT
Oligopeptide/dipeptide ABC transporter, ATP-binding protein domain {ECO:0000313|EMBL:ENZ35393.1}; TaxID=997897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90B8.;"
oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain
L3_079_000G1_scaffold_55_28
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28882..29874
DNA (993bp) protein (331aa)
Uncharacterized protein n=5 Tax=Clostridium RepID=A8RLN1_9CLOT
Oligopeptide/dipeptide ABC transporter, ATP-binding protein domain {ECO:0000313|EMBL:ENZ35392.1}; TaxID=997897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90B8.;"
oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain
L3_079_000G1_scaffold_55_29
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29886..31139
DNA (1254bp) protein (418aa)
acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase (EC:3.5.1.18)
Uncharacterized protein n=4 Tax=Clostridium bolteae RepID=A8RLN2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDP18028.1}; TaxID=411902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium bolteae (strain ATCC BAA-613 / WAL 16351).;"
L3_079_000G1_scaffold_55_30
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31160..32110
DNA (951bp) protein (317aa)
Uncharacterized protein n=3 Tax=Clostridium RepID=N9YQU1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ48183.1}; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
Protein of unknown function (DUF1177).
Displaying items 1-30 of 171 in total

View Taxonomy