ggKbase home page

L3_079_000G1_scaffold_66

Search features with annotation key words

Displaying items 1-30 of 128 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_000G1_scaffold_66_1
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(276..980)
DNA (705bp) protein (235aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; EC=2.7.7.60 {ECO:0000256|HAMAP-Rule:MF_00108};; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase {ECO:0000256|HAMAP-Rule:MF_00108}; MEP cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC:2.7.7.60)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Clostridium sp. D5 RepID=F0Z547_9CLOT
L3_079_000G1_scaffold_66_2
Lachnospiraceae bacterium CAG:215, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(1004..2044)
DNA (1041bp) protein (347aa)
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00018957}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-threonylcarbamoyladenine synthase {ECO:0000256|HAMAP-Rule:MF_01445}; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; TaxID=1262985 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:215.;"
O-sialoglycoprotein endopeptidase (EC:3.4.24.57)
tRNA N6-adenosine threonylcarbamoyltransferase n=2 Tax=Lachnospiraceae RepID=F7JS48_9FIRM
L3_079_000G1_scaffold_66_3
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2113..3018)
DNA (906bp) protein (302aa)
Ribonuclease Z {ECO:0000256|HAMAP-Rule:MF_01818}; Short=RNase Z {ECO:0000256|HAMAP-Rule:MF_01818};; EC=3.1.26.11 {ECO:0000256|HAMAP-Rule:MF_01818};; tRNA 3 endonuclease {ECO:0000256|HAMAP-Rule:MF_01818}; tRNase Z {ECO:0000256|HAMAP-Rule:MF_01818}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
RNAse Z (EC:3.1.26.11)
Ribonuclease Z n=2 Tax=Lachnospiraceae RepID=A7AZF4_RUMGN
L3_079_000G1_scaffold_66_4
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3020..3253)
DNA (234bp) protein (78aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. D5 RepID=F0Z544_9CLOT
Putative uncharacterized protein {ECO:0000313|EMBL:EGB90926.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
hypothetical protein
L3_079_000G1_scaffold_66_5
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(3373..4560)
DNA (1188bp) protein (396aa)
Universal bacterial protein YeaZ n=1 Tax=Ruminococcus gnavus CC55_001C RepID=V8BRY8_RUMGN
Universal bacterial protein YeaZ {ECO:0000313|EMBL:ETD17532.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
glycoprotease
L3_079_000G1_scaffold_66_6
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4633..5061)
DNA (429bp) protein (143aa)
Conserved hypothetical nucleotide-binding protein n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NUC9_9FIRM
Conserved hypothetical nucleotide-binding protein {ECO:0000313|EMBL:CDC14840.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
conserved hypothetical nucleotide-binding protein
L3_079_000G1_scaffold_66_7
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5195..6373)
DNA (1179bp) protein (393aa)
AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) (EC:2.1.2.3 3.5.4.10)
AICARFT/IMPCHase bienzyme n=5 Tax=Clostridiales RepID=A5KQK3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN34148.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
L3_079_000G1_scaffold_66_8
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6389..7114)
DNA (726bp) protein (242aa)
IMP cyclohydrolase-like protein n=2 Tax=Ruminococcus lactaris RepID=B5CS50_9FIRM
IMP cyclohydrolase-like protein {ECO:0000313|EMBL:EDY31876.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
IMP cyclohydrolase-like protein.
L3_079_000G1_scaffold_66_9
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7193..8518)
DNA (1326bp) protein (442aa)
CBS/transporter associated domain-containing protein n=5 Tax=Clostridiales RepID=E5XFS3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG83830.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
CBS/transporter associated domain-containing protein
L3_079_000G1_scaffold_66_10
Clostridium sp. ASF502, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8592..9080)
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF502 RepID=N2AKE2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMZ28516.1}; TaxID=97139 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF502.;"
CarD-like/TRCF domain.
L3_079_000G1_scaffold_66_11
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9304..11001)
DNA (1698bp) protein (566aa)
Carbon starvation protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7KHX2_9FIRM
Carbon starvation protein {ECO:0000313|EMBL:EGN32904.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
Carbon starvation protein, predicted membrane protein
L3_079_000G1_scaffold_66_12
[Clostridium] papyrosolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11460..12314)
DNA (855bp) protein (285aa)
Regulatory protein GntR HTH n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=F1T999_9CLOT
Regulatory protein GntR HTH {ECO:0000313|EMBL:EGD49081.1}; TaxID=588581 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] papyrosolvens DSM 2782.;"
Transcriptional regulators
L3_079_000G1_scaffold_66_13
Anaerococcus hydrogenalis, Anaerococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12379..13806)
DNA (1428bp) protein (476aa)
hypothetical protein n=1 Tax=Clostridiaceae bacterium JC13 RepID=UPI0002EEEF92
Na+/H+ antiporter NhaC {ECO:0000313|EMBL:EGC83490.1}; TaxID=879306 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Anaerococcus.;" source="Anaerococcus hydrogenalis ACS-025-V-Sch4.;"
transporter, NhaC family (TC 2.A.35)
L3_079_000G1_scaffold_66_14
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13829..15016)
DNA (1188bp) protein (396aa)
Uncharacterized protein n=10 Tax=Clostridium RepID=N9W1D6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB62870.1}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
mandelate racemase
L3_079_000G1_scaffold_66_15
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15269..16696
DNA (1428bp) protein (476aa)
Na+/H+ antiporter NhaC n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D9S0_9CLOT
Na+/H+ antiporter NhaC {ECO:0000313|EMBL:EEG51913.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
NhaC family sodium/proton antiporter
L3_079_000G1_scaffold_66_16
Roseburia sp. CAG:100, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16730..17521)
DNA (792bp) protein (264aa)
ssuB; ABC-type uncharacterized transport system, ATPase component SsuB (EC:3.6.3.-)
ABC transporter ATP-binding protein n=1 Tax=Roseburia sp. CAG:100 RepID=R7R8C8_9FIRM
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CDF46328.1}; TaxID=1262940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:100.;"
L3_079_000G1_scaffold_66_17
Roseburia sp. CAG:100, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17515..18423)
DNA (909bp) protein (303aa)
ABC-type transporter integral membrane subunit n=1 Tax=Roseburia sp. CAG:100 RepID=R7R6J7_9FIRM
ABC-type transporter integral membrane subunit {ECO:0000313|EMBL:CDF46329.1}; TaxID=1262940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:100.;"
ABC-type uncharacterized transport system, permease component
L3_079_000G1_scaffold_66_18
Roseburia sp. CAG:100, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18428..19372)
DNA (945bp) protein (315aa)
L-lactate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00488}; Short=L-LDH {ECO:0000256|HAMAP-Rule:MF_00488};; EC=1.1.1.27 {ECO:0000256|HAMAP-Rule:MF_00488};; TaxID=1262940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:100.;"
Malate/lactate dehydrogenases (EC:1.1.1.27)
L-lactate dehydrogenase n=1 Tax=Roseburia sp. CAG:100 RepID=R7R9A7_9FIRM
L3_079_000G1_scaffold_66_19
Roseburia sp. CAG:100, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19450..20487)
DNA (1038bp) protein (346aa)
ABC-type uncharacterized transport system periplasmic component n=1 Tax=Roseburia sp. CAG:100 RepID=R7R8Y5_9FIRM
ABC-type uncharacterized transport system periplasmic component {ECO:0000313|EMBL:CDF46331.1}; TaxID=1262940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:100.;"
ABC-type uncharacterized transport system, periplasmic component
L3_079_000G1_scaffold_66_20
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21143..21751)
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Clostridium bolteae 90B8 RepID=R0B1M7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ38944.1}; TaxID=997897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90B8.;"
Methylase involved in ubiquinone/menaquinone biosynthesis
L3_079_000G1_scaffold_66_21
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21937..23010
DNA (1074bp) protein (358aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (EC:2.7.13.3)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=3 Tax=Lachnospiraceae RepID=A7B1Z6_RUMGN
L3_079_000G1_scaffold_66_22
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23000..23710
DNA (711bp) protein (237aa)
Winged helix family Two component transcriptional regulator n=2 Tax=unclassified Lachnospiraceae RepID=E5XIP7_9FIRM
Winged helix family Two component transcriptional regulator {ECO:0000313|EMBL:EFV18849.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
winged helix family two component transcriptional regulator
L3_079_000G1_scaffold_66_23
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23821..23964
DNA (144bp) protein (48aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B1Z3_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD19388.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
L3_079_000G1_scaffold_66_24
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24128..24919)
DNA (792bp) protein (264aa)
Creatininase {ECO:0000313|EMBL:EEG74134.1}; EC=3.5.2.10 {ECO:0000313|EMBL:EEG74134.1};; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
Creatininase n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C1X0_9CLOT
Creatinine amidohydrolase
L3_079_000G1_scaffold_66_25
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24960..26378)
DNA (1419bp) protein (473aa)
Permease, cytosine/purine, uracil, thiamine, allantoin family n=1 Tax=Clostridium sp. D5 RepID=F0YZD5_9CLOT
Permease, cytosine/purine, uracil, thiamine, allantoin family {ECO:0000313|EMBL:EGB92790.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
cytosine/purines/uracil/thiamine/allantoin family permease
L3_079_000G1_scaffold_66_26
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26425..27417)
DNA (993bp) protein (331aa)
ansA; L-asparaginase 1 (EC:3.5.1.1)
L-asparaginase, type I n=1 Tax=Clostridium sp. D5 RepID=F0YZD4_9CLOT
L-asparaginase, type I {ECO:0000313|EMBL:EGB92789.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
L3_079_000G1_scaffold_66_27
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27464..28111)
DNA (648bp) protein (216aa)
Transcriptional regulator, GntR family n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C1W7_9CLOT
Transcriptional regulator, GntR family {ECO:0000313|EMBL:EEG74131.1}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
transcriptional regulator, GntR family
L3_079_000G1_scaffold_66_28
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28446..32075)
DNA (3630bp) protein (1210aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=1 Tax=Ruminococcus torques ATCC 27756 RepID=A5KM04_9FIRM
L3_079_000G1_scaffold_66_29
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32090..35950)
DNA (3861bp) protein (1287aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=1 Tax=Clostridium sp. D5 RepID=F0YWK2_9CLOT
L3_079_000G1_scaffold_66_30
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(36418..36792)
DNA (375bp) protein (125aa)
50S ribosomal protein L7/L12 n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C6N8_9CLOT
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
LSU ribosomal protein L12P
Displaying items 1-30 of 128 in total

View Taxonomy