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L3_079_000G1_scaffold_71

Search features with annotation key words

Displaying items 1-30 of 136 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_000G1_scaffold_71_1
unknown

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2..127
DNA (126bp) protein (42aa)

This feature has no annotations

L3_079_000G1_scaffold_71_2
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(350..1096)
DNA (747bp) protein (249aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
pseudouridylate synthase I (EC:5.4.99.12)
tRNA pseudouridine synthase A n=1 Tax=Clostridium sp. D5 RepID=F0Z4Z9_9CLOT
L3_079_000G1_scaffold_71_3
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1115..2008)
DNA (894bp) protein (298aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JPX1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN36280.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
LysR family transcriptional regulator
L3_079_000G1_scaffold_71_4
Lachnospiraceae bacterium CAG:215, Clostridiales, Clostridia, Firmicutes, Bacteria

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2156..2737
DNA (582bp) protein (194aa)
putative acetyltransferase (EC:2.3.1.-)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium CAG:215 RepID=R6ECG2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA97525.1}; TaxID=1262985 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:215.;"
L3_079_000G1_scaffold_71_5
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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2734..3276
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XB41_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47569.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
iron-sulfur flavoprotein
L3_079_000G1_scaffold_71_6
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3291..4262
DNA (972bp) protein (324aa)
Alpha/beta family hydrolase n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9R7K8_CLOSW
alpha/beta family hydrolase
Alpha/beta family hydrolase {ECO:0000313|EMBL:ADL03737.1}; TaxID=610130 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533; / WM1).;"
L3_079_000G1_scaffold_71_7
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4273..5097)
DNA (825bp) protein (275aa)
Energy-coupling factor transporter transmembrane protein EcfT n=3 Tax=Clostridiales RepID=F7JTZ9_9FIRM
Energy-coupling factor transporter transmembrane protein EcfT {ECO:0000256|HAMAP-Rule:MF_01461}; Short=ECF transporter T component EcfT {ECO:0000256|HAMAP-Rule:MF_01461};; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
ABC-type cobalt transport system, permease component CbiQ and related transporters
L3_079_000G1_scaffold_71_8
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5094..5951)
DNA (858bp) protein (286aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
ABC-type cobalt transport system, ATPase component n=1 Tax=Ruminococcus torques L2-14 RepID=D4M3I0_9FIRM
ABC-type cobalt transport system, ATPase component
L3_079_000G1_scaffold_71_9
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5936..6787)
DNA (852bp) protein (284aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
Cobalt import ATP-binding protein CbiO 1 n=1 Tax=Clostridium sp. D5 RepID=F0Z4Z6_9CLOT
ABC-type cobalt transport system, ATPase component
L3_079_000G1_scaffold_71_10
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6834..7766)
DNA (933bp) protein (311aa)
Integral membrane protein n=1 Tax=Clostridium sp. D5 RepID=F0Z4Z4_9CLOT
Integral membrane protein {ECO:0000313|EMBL:EGB90876.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
hypothetical protein
L3_079_000G1_scaffold_71_11
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7785..8378)
DNA (594bp) protein (198aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase n=4 Tax=Clostridiales RepID=A7B632_RUMGN
L3_079_000G1_scaffold_71_12
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8365..8961)
DNA (597bp) protein (199aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. D5 RepID=F0Z4Z2_9CLOT
Putative uncharacterized protein {ECO:0000313|EMBL:EGB90874.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
hypothetical protein
L3_079_000G1_scaffold_71_13
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8988..9869)
DNA (882bp) protein (294aa)
Putative membrane protein n=1 Tax=Clostridium sp. D5 RepID=F0Z4Z1_9CLOT
Putative membrane protein {ECO:0000313|EMBL:EGB90873.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
putative permease
L3_079_000G1_scaffold_71_14
Clostridium tyrobutyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10010..11125)
DNA (1116bp) protein (372aa)
NAD-dependent 4-hydroxybutyrate dehydrogenase {ECO:0000313|EMBL:CDL90569.1}; EC=1.1.1.61 {ECO:0000313|EMBL:CDL90569.1};; TaxID=1408889 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium tyrobutyricum DIVETGP.;"
4-hydroxybutyrate dehydrogenase n=1 Tax=Clostridium tyrobutyricum RepID=UPI000371AE20
hypothetical protein
L3_079_000G1_scaffold_71_15
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11157..11822)
DNA (666bp) protein (222aa)
Uncharacterized protein n=7 Tax=Clostridium RepID=A8RV92_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDP15297.1}; TaxID=411902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium bolteae (strain ATCC BAA-613 / WAL 16351).;"
class II aldolase/adducin family protein
L3_079_000G1_scaffold_71_16
Anaerostipes sp. CAG:276, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11815..12324)
DNA (510bp) protein (170aa)
Phosphoenolpyruvate-dependent sugar phosphotransferase n=2 Tax=Anaerostipes RepID=E5VQ76_9FIRM
Phosphoenolpyruvate-dependent sugar phosphotransferase {ECO:0000313|EMBL:CDC38416.1}; TaxID=1262699 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes; environmental samples.;" source="Anaerostipes sp. CAG:276.;"
putative PTS IIA-like nitrogen-regulatory protein PtsN
L3_079_000G1_scaffold_71_17
Anaerostipes caccae, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12338..13378)
DNA (1041bp) protein (347aa)
GroES-like protein n=3 Tax=Anaerostipes RepID=B0MIR4_9FIRM
GroES-like protein {ECO:0000313|EMBL:EDR95844.1}; TaxID=411490 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes caccae DSM 14662.;"
alcohol dehydrogenase zinc-binding domain protein
L3_079_000G1_scaffold_71_18
Enterococcus avium, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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comp(13426..13935)
DNA (510bp) protein (170aa)
UPI0002EBE077 related cluster n=1 Tax=unknown RepID=UPI0002EBE077
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EOT48538.1}; TaxID=1140002 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus avium ATCC 14025.;"
L3_079_000G1_scaffold_71_19
Granulicatella adiacens, Granulicatella, Lactobacillales, Bacilli, Firmicutes, Bacteria

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comp(13932..14651)
DNA (720bp) protein (240aa)
Putative triose-phosphate isomerase n=1 Tax=Granulicatella adiacens ATCC 49175 RepID=C8NF90_9LACT
Putative triose-phosphate isomerase {ECO:0000313|EMBL:EEW37619.1}; TaxID=638301 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Carnobacteriaceae; Granulicatella.;" source="Granulicatella adiacens ATCC 49175.;"
triosephosphate isomerase
L3_079_000G1_scaffold_71_20
Enterococcus avium, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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comp(14661..15491)
DNA (831bp) protein (277aa)
UPI0002F6C0B8 related cluster n=1 Tax=unknown RepID=UPI0002F6C0B8
Uncharacterized protein {ECO:0000313|EMBL:EOT48536.1}; TaxID=1140002 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus avium ATCC 14025.;"
hypothetical protein
L3_079_000G1_scaffold_71_21
[Clostridium] citroniae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15516..16814)
DNA (1299bp) protein (433aa)
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HDM9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHF00513.1}; TaxID=742733 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] citroniae WAL-17108.;"
PTS galactitol transporter subunit IIC
L3_079_000G1_scaffold_71_22
Pantoea rodasii, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(16862..17167)
DNA (306bp) protein (102aa)
PTS system, Lactose/Cellobiose specific IIB subunit n=1 Tax=Escherichia coli STEC_MHI813 RepID=G2C630_ECOLX
PTS galactitol transporter subunit IIB {ECO:0000313|EMBL:KHJ65684.1}; TaxID=1076549 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea rodasii.;"
PTS system lactose/cellobiose-specific transporter subunit IIB
L3_079_000G1_scaffold_71_23
Enterococcus malodoratus, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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comp(17188..19296)
DNA (2109bp) protein (703aa)
Uncharacterized protein n=1 Tax=Enterococcus malodoratus ATCC 43197 RepID=R2NMQ3_9ENTE
Uncharacterized protein {ECO:0000313|EMBL:EOH72273.1}; TaxID=1158601 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus malodoratus ATCC 43197.;"
PTS modulated transcriptional regulator MtlR family
L3_079_000G1_scaffold_71_24
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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19645..20757
DNA (1113bp) protein (371aa)
Multiple sugar-binding transporter ATP-binding protein n=1 Tax=Ruminococcus gnavus RepID=G2YZP5_RUMGN
Multiple sugar-binding transporter ATP-binding protein {ECO:0000313|EMBL:CCA61957.1}; TaxID=33038 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus.;"
carbohydrate ABC transporter ATP-binding protein, CUT1 family (TC 3.A.1.1.-)
L3_079_000G1_scaffold_71_25
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20962..21873
DNA (912bp) protein (304aa)
Putative regulator of polyketide synthase expression n=1 Tax=Clostridium sp. D5 RepID=F0Z4Y7_9CLOT
Putative regulator of polyketide synthase expression {ECO:0000313|EMBL:EGB90869.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
hypothetical protein
L3_079_000G1_scaffold_71_26
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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21876..22376
DNA (501bp) protein (167aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=A5KIN0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFV18770.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
hypothetical protein
L3_079_000G1_scaffold_71_27
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22513..23421)
DNA (909bp) protein (303aa)
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
thioredoxin-disulfide reductase (EC:1.8.1.9)
Thioredoxin reductase n=1 Tax=Clostridium sp. D5 RepID=F0Z4Y5_9CLOT
L3_079_000G1_scaffold_71_28
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23483..25876)
DNA (2394bp) protein (798aa)
anaerobic ribonucleoside-triphosphate reductase (EC:1.17.4.2)
Uncharacterized protein n=3 Tax=Clostridiales RepID=R5TPV9_9FIRM
Anaerobic ribonucleoside-triphosphate reductase {ECO:0000313|EMBL:ETD17626.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
L3_079_000G1_scaffold_71_29
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(26114..26809)
DNA (696bp) protein (232aa)
nrdG; ribonucleoside-triphosphate reductase-like protein (EC:1.17.4.2)
Anaerobic ribonucleoside-triphosphate reductase activating protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UFU0_9FIRM
Anaerobic ribonucleoside-triphosphate reductase activating protein {ECO:0000313|EMBL:ETD17619.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
L3_079_000G1_scaffold_71_30
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26812..27411)
DNA (600bp) protein (200aa)
Putative Transcriptional regulator n=1 Tax=Clostridium sp. D5 RepID=F0Z4X5_9CLOT
Putative Transcriptional regulator {ECO:0000313|EMBL:EGB90857.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
TetR family transcriptional regulator
Displaying items 1-30 of 136 in total

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