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L3_079_000G1_scaffold_117

Search features with annotation key words

Displaying items 1-30 of 198 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_000G1_scaffold_117_1
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

756..1679
DNA (924bp) protein (308aa)
Site-specific recombinase, phage integrase family n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E8H3_9ACTN
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:EBA40189.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
Integrase
L3_079_000G1_scaffold_117_2
Bifidobacterium saeculare, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1882..3540
DNA (1659bp) protein (553aa)
Folylpolyglutamate synthase {ECO:0000313|EMBL:KFI87885.1}; EC=6.3.2.17 {ECO:0000313|EMBL:KFI87885.1};; TaxID=1437611 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium saeculare DSM 6531 = LMG 14934.;"
folC; folylpolyglutamate synthase (EC:6.3.2.17)
Folylpolyglutamate synthase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WGY6_BIFBI
L3_079_000G1_scaffold_117_3
Bifidobacterium saeculare, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3583..7263
DNA (3681bp) protein (1227aa)
Chromosome partition protein Smc n=1 Tax=Bifidobacterium longum subsp. longum 44B RepID=I3BHC8_BIFLN
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=1437611 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium saeculare DSM 6531 = LMG 14934.;"
condensin subunit Smc
L3_079_000G1_scaffold_117_4
Bifidobacterium gallinarum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7260..7982)
DNA (723bp) protein (241aa)
Aspartate racemase {ECO:0000313|EMBL:KFI61237.1}; EC=5.1.1.13 {ECO:0000313|EMBL:KFI61237.1};; TaxID=78344 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium gallinarum.;"
Aspartate racemase n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ENT1_BIFBS
aspa; aspartate racemase
L3_079_000G1_scaffold_117_5
Bifidobacterium pullorum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7979..9223)
DNA (1245bp) protein (415aa)
ATP-grasp superfamily protein {ECO:0000313|EMBL:KFI84621.1}; EC=6.3.1.12 {ECO:0000313|EMBL:KFI84621.1};; TaxID=78448 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pullorum.;"
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=E0Q5H7_9BIFI
ATP-grasp protein
L3_079_000G1_scaffold_117_6
Bifidobacterium saeculare, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9276..10070)
DNA (795bp) protein (265aa)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase {ECO:0000256|HAMAP-Rule:MF_00208}; EC=6.3.2.7 {ECO:0000256|HAMAP-Rule:MF_00208};; L-lysine-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; TaxID=1437611 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium saeculare DSM 6531 = LMG 14934.;"
mur; mur UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase (EC:6.3.2.13)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase n=2 Tax=Bifidobacterium dentium RepID=E0Q5H8_9BIFI
L3_079_000G1_scaffold_117_7
Bifidobacterium gallinarum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10085..10678)
DNA (594bp) protein (198aa)
UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|SAAS:SAAS00085409}; EC=6.3.2.- {ECO:0000256|SAAS:SAAS00276926};; TaxID=78344 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium gallinarum.;"
mur; mur UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase (EC:6.3.2.13)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase n=2 Tax=Bifidobacterium dentium RepID=E0Q5H8_9BIFI
L3_079_000G1_scaffold_117_8
Bifidobacterium gallinarum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10743..11537)
DNA (795bp) protein (265aa)
UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|SAAS:SAAS00085409}; EC=6.3.2.- {ECO:0000256|SAAS:SAAS00276926};; TaxID=78344 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium gallinarum.;"
murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC:6.3.2.13)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase n=3 Tax=Bifidobacterium bifidum RepID=U2DNA8_BIFBI
L3_079_000G1_scaffold_117_9
Bifidobacterium gallinarum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12187..12933)
DNA (747bp) protein (249aa)
Exonuclease n=1 Tax=Bifidobacterium thermophilum RBL67 RepID=M4RFH2_9BIFI
DNA polymerase III epsilon subunit-like 3'-5' exonuclease {ECO:0000313|EMBL:KFI61233.1}; TaxID=78344 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium gallinarum.;"
exonuclease
L3_079_000G1_scaffold_117_10
Bifidobacterium pullorum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13000..13698
DNA (699bp) protein (233aa)
Sigma-70 region 2 n=4 Tax=Bifidobacterium breve RepID=F6C8N4_BIFBA
RNA polymerase sigma-E factor {ECO:0000313|EMBL:KFI84625.1}; TaxID=78448 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pullorum.;"
RNA polymerase ECF-type sigma factor
L3_079_000G1_scaffold_117_11
Bifidobacterium saeculare, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13695..13976
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HVL1_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:KFI87878.1}; TaxID=1437611 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium saeculare DSM 6531 = LMG 14934.;"
hypothetical protein
L3_079_000G1_scaffold_117_12
Bifidobacterium pullorum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14218..15168)
DNA (951bp) protein (317aa)
Putative aldose-1-epimerase {ECO:0000313|EMBL:KFI84627.1}; EC=5.1.3.3 {ECO:0000313|EMBL:KFI84627.1};; TaxID=78448 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pullorum.;"
Uncharacterized protein n=2 Tax=Bifidobacterium adolescentis RepID=A1A2D0_BIFAA
aldose 1-epimerase
L3_079_000G1_scaffold_117_13
Bifidobacterium saeculare, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15384..16379
DNA (996bp) protein (332aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxID=1437611 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium saeculare DSM 6531 = LMG 14934.;"
ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC:1.17.1.2)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2IP46_BIFBI
L3_079_000G1_scaffold_117_14
Bifidobacterium pullorum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16516..17016)
DNA (501bp) protein (167aa)
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase {ECO:0000256|PIRNR:PIRNR006181}; EC=4.2.-.- {ECO:0000256|PIRNR:PIRNR006181};; TaxID=78448 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pullorum.;"
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase n=2 Tax=Bifidobacterium bifidum RepID=E4V8L6_BIFBI
hypothetical protein
L3_079_000G1_scaffold_117_15
Bifidobacterium gallinarum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17131..18189)
DNA (1059bp) protein (353aa)
Glyceraldehyde 3-phosphate dehydrogenase C {ECO:0000313|EMBL:KFI61227.1}; EC=1.2.1.12 {ECO:0000313|EMBL:KFI61227.1};; TaxID=78344 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium gallinarum.;"
glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.12)
glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=Bifidobacterium pseudolongum RepID=UPI0003B31F6A
L3_079_000G1_scaffold_117_16
Bifidobacterium pullorum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18332..19078)
DNA (747bp) protein (249aa)
thiamin pyrophosphokinase (EC:2.7.6.2)
Thiamine diphosphokinase n=1 Tax=Bifidobacterium angulatum DSM 20098 = JCM 7096 RepID=C4FEA2_9BIFI
Thiamine diphosphokinase {ECO:0000313|EMBL:KFI84631.1}; TaxID=78448 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pullorum.;"
L3_079_000G1_scaffold_117_17
Bifidobacterium saeculare, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19246..21135
DNA (1890bp) protein (630aa)
Asparagine synthase {ECO:0000313|EMBL:KFI87872.1}; EC=6.3.5.4 {ECO:0000313|EMBL:KFI87872.1};; TaxID=1437611 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium saeculare DSM 6531 = LMG 14934.;"
Asparagine synthetase n=2 Tax=Bifidobacterium RepID=A1A2C5_BIFAA
asnH; asparagine synthetase
L3_079_000G1_scaffold_117_18
Bifidobacterium pullorum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21497..22168
DNA (672bp) protein (224aa)
Translation initiation factor IF-3 n=1 Tax=Bifidobacterium angulatum DSM 20098 = JCM 7096 RepID=C4FEA5_9BIFI
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080}; TaxID=78448 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pullorum.;"
Bacterial Protein Translation Initiation Factor 3 (IF-3)
L3_079_000G1_scaffold_117_19
Bifidobacterium saeculare, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


22149..22343
DNA (195bp) protein (65aa)
50S ribosomal protein L35 n=1 Tax=Bifidobacterium thermophilum RBL67 RepID=M4RBV7_9BIFI
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=1437611 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium saeculare DSM 6531 = LMG 14934.;"
rpmI; 50S ribosomal protein L35
L3_079_000G1_scaffold_117_20
Bifidobacterium pullorum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


22393..22776
DNA (384bp) protein (128aa)
50S ribosomal protein L20 n=1 Tax=Bifidobacterium angulatum DSM 20098 = JCM 7096 RepID=C4FEA7_9BIFI
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=78448 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pullorum.;"
rplT; 50S ribosomal protein L20
L3_079_000G1_scaffold_117_21
Bifidobacterium gallinarum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22873..23817
DNA (945bp) protein (315aa)
Tyrosine recombinase XerD n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZUX7_BIFLJ
Tyrosine recombinase XerD {ECO:0000256|HAMAP-Rule:MF_01807}; TaxID=78344 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium gallinarum.;"
tyrosine recombinase XerD
L3_079_000G1_scaffold_117_22
Bifidobacterium saeculare, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23961..24983
DNA (1023bp) protein (341aa)
Chromosome partitioning protein n=5 Tax=Bifidobacterium bifidum RepID=E3ENU9_BIFBS
Chromosome partitioning protein {ECO:0000313|EMBL:KFI87867.1}; TaxID=1437611 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium saeculare DSM 6531 = LMG 14934.;"
chromosome partitioning protein
L3_079_000G1_scaffold_117_23
Bifidobacterium pullorum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24998..25834
DNA (837bp) protein (279aa)
Segregation and condensation protein A n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HSW7_BIFBI
Chromosome segregation and condensation protein ScpA {ECO:0000313|EMBL:KFI84638.1}; TaxID=78448 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pullorum.;"
scpA; segregation and condensation protein A
L3_079_000G1_scaffold_117_24
Bifidobacterium gallinarum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25863..26513
DNA (651bp) protein (217aa)
Putative transcriptional regulator n=2 Tax=Bifidobacterium longum RepID=B3DQT9_BIFLD
Segregation and condensation protein B {ECO:0000256|SAAS:SAAS00086417}; TaxID=78344 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium gallinarum.;"
transcriptional regulator
L3_079_000G1_scaffold_117_25
Bifidobacterium pullorum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26581..27387
DNA (807bp) protein (269aa)
Phosphohydrolase {ECO:0000313|EMBL:KFI84640.1}; EC=3.6.1.13 {ECO:0000313|EMBL:KFI84640.1};; TaxID=78448 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pullorum.;"
nudF; ADP-ribose pyrophosphatase (EC:3.6.1.13)
Hydrolase, NUDIX family n=2 Tax=Bifidobacterium bifidum RepID=U2CEV2_BIFBI
L3_079_000G1_scaffold_117_26
Bifidobacterium saeculare, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27473..28834
DNA (1362bp) protein (454aa)
Probable sugar transporter n=2 Tax=Bifidobacterium RepID=A1A2B8_BIFAA
Sugar transporter {ECO:0000313|EMBL:KFI87863.1}; TaxID=1437611 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium saeculare DSM 6531 = LMG 14934.;"
putative sugar transporter
L3_079_000G1_scaffold_117_27
Bifidobacterium gallinarum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28913..31714
DNA (2802bp) protein (934aa)
ABC transporter {ECO:0000313|EMBL:KFI61215.1}; EC=3.6.3.28 {ECO:0000313|EMBL:KFI61215.1};; TaxID=78344 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium gallinarum.;"
ABC-type antimicrobial peptide transport system, ATPase component n=11 Tax=Bifidobacterium RepID=D6DCV2_BIFLN
hypothetical protein
L3_079_000G1_scaffold_117_28
Bifidobacterium saeculare, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31840..33768
DNA (1929bp) protein (643aa)
Stress response membrane GTPase {ECO:0000313|EMBL:KFI87861.1}; EC=3.6.5.- {ECO:0000313|EMBL:KFI87861.1};; TaxID=1437611 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium saeculare DSM 6531 = LMG 14934.;"
GTP-binding protein TypA n=10 Tax=Gardnerella vaginalis RepID=E3D736_GARV3
typA; GTP-binding protein TypA/BipA
L3_079_000G1_scaffold_117_29
Bifidobacterium saeculare, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

33834..34412
DNA (579bp) protein (193aa)
Alcohol dehydrogenase, class IV n=4 Tax=Bifidobacterium dentium RepID=D2Q584_BIFDB
Alcohol dehydrogenase, class IV {ECO:0000313|EMBL:KFI87860.1}; TaxID=1437611 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium saeculare DSM 6531 = LMG 14934.;"
alcohol dehydrogenase, class IV
L3_079_000G1_scaffold_117_30
Bifidobacterium gallinarum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

34409..35395
DNA (987bp) protein (329aa)
Prephenate dehydratase {ECO:0000313|EMBL:KFI61212.1}; EC=4.2.1.51 {ECO:0000313|EMBL:KFI61212.1};; EC=5.4.99.5 {ECO:0000313|EMBL:KFI61212.1};; TaxID=78344 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium gallinarum.;"
Prephenate dehydratase n=14 Tax=Bifidobacterium RepID=B3DQU8_BIFLD
chorismate mutase
Displaying items 1-30 of 198 in total

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