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L3_079_000G1_scaffold_193

Search features with annotation key words

Displaying items 1-30 of 84 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_000G1_scaffold_193_1
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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233..1600
DNA (1368bp) protein (456aa)
K+ transport systems, NAD-binding component n=1 Tax=Clostridium cf. saccharolyticum K10 RepID=D6DIR2_CLOSC
K+ transport systems, NAD-binding component
K+ transport systems, NAD-binding component {ECO:0000313|EMBL:CBK77586.1}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
L3_079_000G1_scaffold_193_2
butyrate-producing bacterium SM4/1, Clostridiales, Clostridia, Firmicutes, Bacteria

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1605..3044
DNA (1440bp) protein (480aa)
Trk-type K+ transport systems, membrane components n=3 Tax=Clostridiales RepID=D4MTE7_9FIRM
Trk-type K+ transport systems, membrane components
Trk-type K+ transport systems, membrane components {ECO:0000313|EMBL:CBL37033.1}; TaxID=245012 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SM4/1.;"
L3_079_000G1_scaffold_193_3
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3204..3617)
DNA (414bp) protein (138aa)
CBS domain protein n=1 Tax=Clostridium sp. M62/1 RepID=D4CA50_9CLOT
CBS domain protein {ECO:0000313|EMBL:EFE13125.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
FOG: CBS domain
L3_079_000G1_scaffold_193_4
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3701..4291)
DNA (591bp) protein (197aa)
Uncharacterised ACR, YkgG family COG1556 n=1 Tax=Clostridium cf. saccharolyticum K10 RepID=D6DIR0_CLOSC
Uncharacterised ACR, YkgG family COG1556.
Uncharacterised ACR, YkgG family COG1556 {ECO:0000313|EMBL:CBK77584.1}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
L3_079_000G1_scaffold_193_5
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4683..5471)
DNA (789bp) protein (263aa)
Peptidase M23 family n=1 Tax=Clostridium sp. CAG:149 RepID=R5LSE8_9CLOT
Peptidase M23 family {ECO:0000313|EMBL:CCY82083.1}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
peptidase M23
L3_079_000G1_scaffold_193_6
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5512..6447)
DNA (936bp) protein (312aa)
SpoIID/LytB domain protein n=1 Tax=Clostridium sp. CAG:149 RepID=R5MA27_9CLOT
SpoIID/LytB domain protein {ECO:0000313|EMBL:CCY82081.1}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
SpoIID/LytB domain
L3_079_000G1_scaffold_193_7
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6792..7148
DNA (357bp) protein (119aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=D4CA56_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCY82079.1}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
L3_079_000G1_scaffold_193_8
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7197..9647)
DNA (2451bp) protein (817aa)
glycogen/starch/alpha-glucan phosphorylases (EC:2.4.1.1)
Alpha-1,4 glucan phosphorylase {ECO:0000256|RuleBase:RU000587}; EC=2.4.1.1 {ECO:0000256|RuleBase:RU000587};; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
Phosphorylase n=3 Tax=Clostridium RepID=D6DIQ7_CLOSC
L3_079_000G1_scaffold_193_9
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9809..12946)
DNA (3138bp) protein (1046aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02003}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
isoleucyl-tRNA synthetase (EC:6.1.1.5)
Isoleucine--tRNA ligase n=1 Tax=Clostridium sp. CAG:149 RepID=R5LXI3_9CLOT
L3_079_000G1_scaffold_193_10
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12919..13161)
DNA (243bp) protein (81aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=D4CA59_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK77579.1}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
L3_079_000G1_scaffold_193_11
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13529..14506)
DNA (978bp) protein (326aa)
Monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-) n=3 Tax=Clostridium RepID=D6DIQ4_CLOSC
monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-)
Monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-) {ECO:0000313|EMBL:CBK77578.1}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
L3_079_000G1_scaffold_193_12
butyrate-producing bacterium SM4/1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14493..16238)
DNA (1746bp) protein (582aa)
Predicted signal transduction protein with a C-terminal ATPase domain (EC:2.7.13.3)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656, ECO:0000313|EMBL:CBL37028.1};; TaxID=245012 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SM4/1.;"
Predicted signal transduction protein with a C-terminal ATPase domain n=3 Tax=Clostridiales RepID=D4MTE2_9FIRM
L3_079_000G1_scaffold_193_13
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16235..17839)
DNA (1605bp) protein (535aa)
Two component transcriptional regulator, AraC family n=3 Tax=Clostridium RepID=D6DIQ2_CLOSC
two component transcriptional regulator, AraC family
Two component transcriptional regulator, AraC family {ECO:0000313|EMBL:CBK77576.1}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
L3_079_000G1_scaffold_193_14
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18118..19578
DNA (1461bp) protein (487aa)
Nicotinate phosphoribosyltransferase {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163}; EC=6.3.4.21 {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163};; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
putative nicotinate phosphoribosyltransferase (EC:2.4.2.11)
Nicotinate phosphoribosyltransferase n=1 Tax=Clostridium sp. CAG:149 RepID=R5LS72_9CLOT
L3_079_000G1_scaffold_193_15
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19854..20771)
DNA (918bp) protein (306aa)
Lyzozyme M1 (1,4-beta-N-acetylmuramidase) n=2 Tax=Clostridium RepID=D6DIQ0_CLOSC
Lyzozyme M1 (1,4-beta-N-acetylmuramidase)
Lyzozyme M1 (1,4-beta-N-acetylmuramidase) {ECO:0000313|EMBL:CBK77574.1}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
L3_079_000G1_scaffold_193_16
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20967..22256)
DNA (1290bp) protein (430aa)
Chloride channel protein EriC n=1 Tax=Clostridium cf. saccharolyticum K10 RepID=D6DIP9_CLOSC
Chloride channel protein EriC
Chloride channel protein EriC {ECO:0000313|EMBL:CBK77573.1}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
L3_079_000G1_scaffold_193_17
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22511..23239)
DNA (729bp) protein (243aa)
Probable transcriptional regulatory protein CLS_20940 n=3 Tax=Clostridium RepID=D6DIP8_CLOSC
conserved hypothetical protein TIGR01033
Probable transcriptional regulatory protein CLS_20940 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
L3_079_000G1_scaffold_193_18
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23407..24786)
DNA (1380bp) protein (460aa)
CBS domain protein n=1 Tax=Clostridium sp. CAG:149 RepID=R5MN87_9CLOT
CBS domain protein {ECO:0000313|EMBL:CCY86467.1}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
Hemolysins and related proteins containing CBS domains
L3_079_000G1_scaffold_193_19
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25051..25398)
DNA (348bp) protein (116aa)
mRNA interferase {ECO:0000256|PIRNR:PIRNR033490}; EC=3.1.-.- {ECO:0000256|PIRNR:PIRNR033490};; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
mRNA interferase n=1 Tax=Clostridium sp. CAG:149 RepID=R5MA21_9CLOT
transcriptional modulator of MazE/toxin MazF
L3_079_000G1_scaffold_193_20
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25540..26799)
DNA (1260bp) protein (420aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247};; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
alanine racemase (EC:5.1.1.1)
Alanine racemase n=1 Tax=Clostridium sp. CAG:149 RepID=R5MMH2_9CLOT
L3_079_000G1_scaffold_193_21
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26933..28471)
DNA (1539bp) protein (513aa)
YjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region n=4 Tax=Clostridiales RepID=D6DIP6_CLOSC
yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region
YjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region {ECO:0000313|EMBL:CBK77570.1}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
L3_079_000G1_scaffold_193_22
butyrate-producing bacterium SM4/1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28501..28881)
DNA (381bp) protein (127aa)
phosphopantethiene--protein transferase domain (EC:2.7.8.7)
Holo-[acyl-carrier-protein] synthase {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00237208}; Short=Holo-ACP synthase {ECO:0000256|HAMAP-Rule:MF_00101};; EC=2.7.8.7 {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00237180};; 4'-phosphopantetheinyl transferase AcpS {ECO:0000256|HAMAP-Rule:MF_00101}; TaxID=245012 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SM4/1.;"
Holo-[acyl-carrier-protein] synthase n=4 Tax=Clostridiales RepID=D4MPE5_9FIRM
L3_079_000G1_scaffold_193_23
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28878..29555)
DNA (678bp) protein (226aa)
Redox-sensing transcriptional repressor Rex n=2 Tax=Clostridium RepID=D4CA76_9CLOT
Redox-sensing transcriptional repressor Rex {ECO:0000256|HAMAP-Rule:MF_01131}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
AT-rich DNA-binding protein
L3_079_000G1_scaffold_193_24
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29952..32021
DNA (2070bp) protein (690aa)
ATPase components of ABC transporters with duplicated ATPase domains n=1 Tax=Clostridium cf. saccharolyticum K10 RepID=D6DIP4_CLOSC
ATPase components of ABC transporters with duplicated ATPase domains
ATPase components of ABC transporters with duplicated ATPase domains {ECO:0000313|EMBL:CBK77568.1}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
L3_079_000G1_scaffold_193_25
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32173..33279)
DNA (1107bp) protein (369aa)
Anti-sigma-V factor RsiV domain protein n=1 Tax=Clostridium sp. CAG:149 RepID=R5LVV8_9CLOT
Anti-sigma-V factor RsiV domain protein {ECO:0000313|EMBL:CCY83415.1}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
Protein of unknown function (DUF3298).
L3_079_000G1_scaffold_193_26
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33276..33806)
DNA (531bp) protein (177aa)
RNA polymerase sigma factor n=2 Tax=Clostridium RepID=D4CA80_9CLOT
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
RNA polymerase, sigma subunit, SigV
L3_079_000G1_scaffold_193_27
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34389..35705)
DNA (1317bp) protein (439aa)
Cell wall-binding repeat protein n=1 Tax=Clostridium sp. CAG:149 RepID=R5M6S6_9CLOT
Cell wall-binding repeat protein {ECO:0000313|EMBL:CCY87238.1}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
cell wall binding repeat-containing protein
L3_079_000G1_scaffold_193_28
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

36043..36348
DNA (306bp) protein (102aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=D4CA83_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY87239.1}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
hypothetical protein
L3_079_000G1_scaffold_193_29
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36481..37758)
DNA (1278bp) protein (426aa)
adenylosuccinate synthase (EC:6.3.4.4)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
Adenylosuccinate synthetase n=2 Tax=Clostridium RepID=D6DIP3_CLOSC
L3_079_000G1_scaffold_193_30
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(37942..38859)
DNA (918bp) protein (306aa)
LysR substrate binding domain protein n=1 Tax=Clostridium sp. CAG:149 RepID=R5MPK2_9CLOT
LysR substrate binding domain protein {ECO:0000313|EMBL:CCY87241.1}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
Transcriptional regulator
Displaying items 1-30 of 84 in total

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