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L3_079_000G1_scaffold_254

Search features with annotation key words

Displaying items 1-30 of 86 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_000G1_scaffold_254_1
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(290..706)
DNA (417bp) protein (139aa)
ATP synthase F1 subcomplex epsilon subunit (EC:3.6.3.14)
ATP synthase epsilon chain n=1 Tax=Clostridium sp. D5 RepID=F0Z387_9CLOT
ATP synthase epsilon chain {ECO:0000256|HAMAP-Rule:MF_00530}; ATP synthase F1 sector epsilon subunit {ECO:0000256|HAMAP-Rule:MF_00530}; F-ATPase epsilon subunit {ECO:0000256|HAMAP-Rule:MF_00530}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
L3_079_000G1_scaffold_254_2
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(719..2110)
DNA (1392bp) protein (464aa)
ATP synthase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01347};; ATP synthase F1 sector subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; F-ATPase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
ATP synthase F1 subcomplex beta subunit (EC:3.6.3.14)
ATP synthase subunit beta n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TLW6_9FIRM
L3_079_000G1_scaffold_254_3
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2117..3010)
DNA (894bp) protein (298aa)
ATP synthase, F1 gamma subunit (EC:3.6.3.14)
ATP synthase gamma chain n=2 Tax=Ruminococcus lactaris PF9_9FIRM">RepID=B5CPF9_9FIRM
ATP synthase gamma chain {ECO:0000256|HAMAP-Rule:MF_00815}; ATP synthase F1 sector gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; F-ATPase gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
L3_079_000G1_scaffold_254_4
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3014..4522)
DNA (1509bp) protein (503aa)
ATP synthase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01346};; ATP synthase F1 sector subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; F-ATPase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
ATP synthase F1, alpha subunit n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C6L9_9FIRM
ATP synthase F1 subunit alpha
L3_079_000G1_scaffold_254_5
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4528..5061)
DNA (534bp) protein (178aa)
ATP synthase, F1 delta subunit (EC:3.6.3.14)
ATP synthase subunit delta n=2 Tax=Clostridiales RepID=D4M298_9FIRM
ATP synthase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; ATP synthase F(1) sector subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; F-type ATPase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L3_079_000G1_scaffold_254_6
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5042..5545)
DNA (504bp) protein (168aa)
ATP synthase subunit b n=1 Tax=Clostridium sp. D5 RepID=F0Z382_9CLOT
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
ATP synthase F0 subunit B
L3_079_000G1_scaffold_254_7
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5575..5799)
DNA (225bp) protein (75aa)
ATP synthase F0 subcomplex C subunit (EC:3.6.3.14)
ATP synthase F0, C subunit n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C1K6_9CLOT
ATP synthase subunit c {ECO:0000256|SAAS:SAAS00242779}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
L3_079_000G1_scaffold_254_8
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5831..6706)
DNA (876bp) protein (292aa)
ATP synthase F0 subcomplex A subunit (EC:3.6.3.14)
ATP synthase subunit a n=2 Tax=Clostridiales RepID=D4M2A0_9FIRM
ATP synthase subunit a {ECO:0000256|HAMAP-Rule:MF_01393, ECO:0000256|RuleBase:RU000483}; ATP synthase F0 sector subunit a {ECO:0000256|HAMAP-Rule:MF_01393}; F-ATPase subunit 6 {ECO:0000256|HAMAP-Rule:MF_01393}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L3_079_000G1_scaffold_254_9
Clostridium sp. ASF502, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7154..7831
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF502 RepID=N2AW94_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMZ30688.1}; TaxID=97139 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF502.;"
hypothetical protein
L3_079_000G1_scaffold_254_10
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7876..8832)
DNA (957bp) protein (319aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A5KNE6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDK24095.1}; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
hypothetical protein
L3_079_000G1_scaffold_254_11
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8909..11368)
DNA (2460bp) protein (820aa)
Efflux ABC transporter, permease protein n=1 Tax=Clostridium sp. D5 RepID=F0Z351_9CLOT
Efflux ABC transporter, permease protein {ECO:0000313|EMBL:EGB91483.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
permease
L3_079_000G1_scaffold_254_12
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11365..12045)
DNA (681bp) protein (227aa)
ABC transporter, ATP-binding protein n=1 Tax=Clostridium sp. D5 RepID=F0Z350_9CLOT
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EGB91482.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
ABC-type antimicrobial peptide transport system, ATPase component
L3_079_000G1_scaffold_254_13
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12217..13143)
DNA (927bp) protein (309aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
Putative sensor protein ResE n=1 Tax=Clostridium sp. D5 RepID=F0Z349_9CLOT
hypothetical protein
L3_079_000G1_scaffold_254_14
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13140..13832)
DNA (693bp) protein (231aa)
Phosphate regulon transcriptional regulatory protein PhoB n=1 Tax=Clostridium sp. D5 RepID=F0Z348_9CLOT
Phosphate regulon transcriptional regulatory protein PhoB {ECO:0000313|EMBL:EGB91480.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
hypothetical protein
L3_079_000G1_scaffold_254_15
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13903..14463
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TTU5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ66694.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Predicted metal-dependent hydrolase
L3_079_000G1_scaffold_254_16
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14503..15078)
DNA (576bp) protein (192aa)
Maf-like protein HMPREF0988_01544 n=2 Tax=Lachnospiraceae RepID=F7JMC7_9FIRM
Maf-like protein HMPREF0988_01544 {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
MAF protein
L3_079_000G1_scaffold_254_17
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15075..15926)
DNA (852bp) protein (284aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C4J6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD21987.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
CAAX amino terminal protease family.
L3_079_000G1_scaffold_254_18
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16096..16860
DNA (765bp) protein (255aa)
UPF0246 protein HMPREF0240_03534 n=1 Tax=Clostridium sp. D5 RepID=F0Z342_9CLOT
UPF0246 protein HMPREF0240_03534 {ECO:0000256|HAMAP-Rule:MF_00652}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
hypothetical protein
L3_079_000G1_scaffold_254_19
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16870..17763)
DNA (894bp) protein (298aa)
Putative transcriptional regulator (LysR family) n=1 Tax=Clostridium sp. D5 RepID=F0YTR1_9CLOT
Putative transcriptional regulator (LysR family) {ECO:0000313|EMBL:EGB94281.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
LysR family transcriptional regulator
L3_079_000G1_scaffold_254_20
Brevibacillus sp. CF112, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

18012..19802
DNA (1791bp) protein (597aa)
hypothetical protein n=1 Tax=Brevibacillus sp. phR RepID=UPI0003120F2C
Putative membrane protein {ECO:0000313|EMBL:EJL40274.1}; Flags: Precursor;; TaxID=1144311 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Brevibacillus.;" source="Brevibacillus sp. CF112.;"
hypothetical protein
L3_079_000G1_scaffold_254_21
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19992..20903
DNA (912bp) protein (304aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LFD1_9FIRM
hypothetical protein
L3_079_000G1_scaffold_254_22
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20936..21178
DNA (243bp) protein (81aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=A7B2T1_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD20294.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
L3_079_000G1_scaffold_254_23
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21441..23105
DNA (1665bp) protein (555aa)
glycerol dehydratase (EC:4.2.1.30)
Glycerol dehydratase large subunit n=3 Tax=Clostridiales RepID=F7JWX3_9FIRM
Glycerol dehydratase large subunit {ECO:0000313|EMBL:ETD19010.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
L3_079_000G1_scaffold_254_24
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23120..23815
DNA (696bp) protein (232aa)
Glycerol dehydratase, medium subunit {ECO:0000313|EMBL:EDN78453.1}; EC=4.2.1.30 {ECO:0000313|EMBL:EDN78453.1};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
Glycerol dehydratase, medium subunit n=2 Tax=Lachnospiraceae RepID=A7B0W4_RUMGN
dehydratase medium subunit
L3_079_000G1_scaffold_254_25
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23816..24208
DNA (393bp) protein (131aa)
Glycerol dehydratase, small subunit n=1 Tax=Clostridium sp. D5 RepID=F0Z328_9CLOT
Glycerol dehydratase, small subunit {ECO:0000313|EMBL:EGB91460.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
dehydratase small subunit
L3_079_000G1_scaffold_254_26
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24205..26016
DNA (1812bp) protein (604aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JMD4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN38312.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
diol/glycerol dehydratase reactivating factor large subunit
L3_079_000G1_scaffold_254_27
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26046..26375
DNA (330bp) protein (110aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=A7B0W1_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:CCZ66957.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein
L3_079_000G1_scaffold_254_28
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26445..27005
DNA (561bp) protein (187aa)
ATP:cob(I)alamin adenosyltransferase n=1 Tax=Clostridium sp. D5 RepID=F0Z325_9CLOT
ATP:cob(I)alamin adenosyltransferase {ECO:0000313|EMBL:EGB91457.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
ATP:cob(I)alamin adenosyltransferase
L3_079_000G1_scaffold_254_29
Firmicutes bacterium CAG:534, Firmicutes, Bacteria

Not on your lists

comp(27239..27736)
DNA (498bp) protein (166aa)
Acetyltransferases n=1 Tax=Firmicutes bacterium CAG:534 RepID=R6ZED6_9FIRM
Acetyltransferases {ECO:0000313|EMBL:CDD46733.1}; TaxID=1263027 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:534.;"
putative acetyltransferase
L3_079_000G1_scaffold_254_30
Acetonema longum, Acetonema, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(27796..28758)
DNA (963bp) protein (321aa)
Proline racemase (Fragment) n=1 Tax=Acetonema longum DSM 6540 RepID=F7NKK6_9FIRM
Proline racemase {ECO:0000313|EMBL:EGO63414.1}; Flags: Fragment;; TaxID=1009370 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Acetonema.;" source="Acetonema longum DSM 6540.;"
proline racemase
Displaying items 1-30 of 86 in total

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