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L3_079_000G1_scaffold_264

Search features with annotation key words

Displaying items 1-30 of 79 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_000G1_scaffold_264_1
unknown

Not on your lists

146..250
DNA (105bp) protein (35aa)

This feature has no annotations

L3_079_000G1_scaffold_264_2
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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312..773
DNA (462bp) protein (154aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=B5CKZ9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD21979.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
hypothetical protein
L3_079_000G1_scaffold_264_3
Coprococcus comes, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

777..1328
DNA (552bp) protein (184aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395}; Short=MECDP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPS {ECO:0000256|HAMAP-Rule:MF_00107};; EC=4.6.1.12 {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395};; TaxID=470146 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus comes ATCC 27758.;"
2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC:4.6.1.12)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=2 Tax=Coprococcus RepID=C0BB28_9FIRM
L3_079_000G1_scaffold_264_4
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1347..2471
DNA (1125bp) protein (375aa)
GCN5-related N-acetyltransferase n=1 Tax=Clostridium sp. D5 RepID=F0Z0Y0_9CLOT
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:EGB92082.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
hypothetical protein
L3_079_000G1_scaffold_264_5
Paenibacillus sp. FSL R5-0912, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(2565..3611)
DNA (1047bp) protein (349aa)
hypothetical protein n=1 Tax=Paenibacillus sanguinis RepID=UPI000376E5C6
LacI family transcriptional regulator
LacI family transcriptional regulator {ECO:0000313|EMBL:AIQ42921.1}; TaxID=1536771 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. FSL R5-0912.;"
L3_079_000G1_scaffold_264_6
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3950..5233
DNA (1284bp) protein (428aa)
ABC transporter, solute-binding protein n=1 Tax=Clostridium sp. KLE 1755 RepID=U2CIF8_9CLOT
ABC transporter, solute-binding protein {ECO:0000313|EMBL:ERI67121.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
capsular biosynthesis protein
L3_079_000G1_scaffold_264_7
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

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5340..6227
DNA (888bp) protein (296aa)
ABC transporter, permease protein n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LAL6_9FIRM
ABC transporter, permease protein {ECO:0000313|EMBL:EET62623.1}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
ABC transporter permease
L3_079_000G1_scaffold_264_8
Lachnospiraceae bacterium A4, Clostridiales, Clostridia, Firmicutes, Bacteria

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6224..7063
DNA (840bp) protein (280aa)
Multiple sugar transport system permease n=1 Tax=Lachnospiraceae bacterium A4 RepID=R9JCR7_9FIRM
Multiple sugar transport system permease {ECO:0000313|EMBL:EOS32000.1}; TaxID=397291 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A4.;"
carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-)
L3_079_000G1_scaffold_264_9
Bacillus bataviensis, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

7066..8424
DNA (1359bp) protein (453aa)
SacC2 n=1 Tax=Bacillus bataviensis LMG 21833 RepID=K6DNI4_9BACI
SacC2 {ECO:0000313|EMBL:EKN69733.1}; TaxID=1117379 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus bataviensis LMG 21833.;"
Glycosyl hydrolase family 32 domain protein
L3_079_000G1_scaffold_264_10
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8421..9857
DNA (1437bp) protein (479aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7KJQ1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN31445.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
hypothetical protein
L3_079_000G1_scaffold_264_11
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9844..10944
DNA (1101bp) protein (367aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A7X0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX37974.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
hypothetical protein
L3_079_000G1_scaffold_264_12
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11322..12008
DNA (687bp) protein (229aa)
Serine acetyltransferase {ECO:0000256|PIRNR:PIRNR000441}; EC=2.3.1.30 {ECO:0000256|PIRNR:PIRNR000441};; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
serine O-acetyltransferase (EC:2.3.1.30)
Serine acetyltransferase n=1 Tax=Clostridium sp. D5 RepID=F0Z0Y1_9CLOT
L3_079_000G1_scaffold_264_13
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12038..13444
DNA (1407bp) protein (469aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase n=1 Tax=Clostridium sp. D5 RepID=F0Z0Y2_9CLOT
L3_079_000G1_scaffold_264_14
Firmicutes bacterium CAG:212, Firmicutes, Bacteria

Not on your lists

13429..13881
DNA (453bp) protein (151aa)
Mini-ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_01468}; Short=Mini-3 {ECO:0000256|HAMAP-Rule:MF_01468};; Short=Mini-RNase 3 {ECO:0000256|HAMAP-Rule:MF_01468};; EC=3.1.26.- {ECO:0000256|HAMAP-Rule:MF_01468};; Mini-RNase III {ECO:0000256|HAMAP-Rule:MF_01468}; TaxID=1263009 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:212.;"
Mini-ribonuclease 3 n=1 Tax=Firmicutes bacterium CAG:212 RepID=R5XG25_9FIRM
hypothetical protein
L3_079_000G1_scaffold_264_15
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13883..14632
DNA (750bp) protein (250aa)
rRNA methylase, putative, group 3 (EC:2.1.1.-)
RNA methyltransferase, TrmH family, group 3 n=1 Tax=Clostridium sp. D5 RepID=F0Z0Y4_9CLOT
RNA methyltransferase, TrmH family, group 3 {ECO:0000313|EMBL:EGB92086.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
L3_079_000G1_scaffold_264_16
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14629..15264
DNA (636bp) protein (212aa)
RNA polymerase sigma factor n=1 Tax=Clostridium sp. D5 RepID=F0Z0Y5_9CLOT
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
RNA polymerase, sigma 30 subunit, SigH
L3_079_000G1_scaffold_264_17
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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15290..15736
DNA (447bp) protein (149aa)
D-aminoacyl-tRNA deacylase {ECO:0000256|HAMAP-Rule:MF_00518, ECO:0000256|SAAS:SAAS00160054}; EC=3.1.1.96 {ECO:0000256|HAMAP-Rule:MF_00518};; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
D-tyrosyl-tRNA(Tyr) deacylase (EC:3.1.-.-)
D-tyrosyl-tRNA(Tyr) deacylase n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3B922_9FIRM
L3_079_000G1_scaffold_264_18
Blautia sp. KLE 1732, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15767..16177
DNA (411bp) protein (137aa)
cytidine deaminase (EC:3.5.4.5)
Cytidine deaminase n=3 Tax=Clostridiales RepID=D4LPC0_9FIRM
Cytidine deaminase {ECO:0000313|EMBL:ERI90606.1}; TaxID=1226324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia sp. KLE 1732.;"
L3_079_000G1_scaffold_264_19
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16219..17010
DNA (792bp) protein (264aa)
Uridine phosphorylase {ECO:0000256|RuleBase:RU361131}; EC=2.4.2.3 {ECO:0000256|RuleBase:RU361131};; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
udp3; uridine phosphorylase Udp (EC:2.4.2.3)
Uridine phosphorylase n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JKM2_9FIRM
L3_079_000G1_scaffold_264_20
Firmicutes bacterium CAG:555, Firmicutes, Bacteria

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17391..19106
DNA (1716bp) protein (572aa)
Fibronectin type III domain-containing protein n=1 Tax=Firmicutes bacterium CAG:555 RepID=R5D044_9FIRM
Fibronectin type III domain-containing protein {ECO:0000313|EMBL:CCX72144.1}; TaxID=1263030 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:555.;"
L3_079_000G1_scaffold_264_21
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19381..20352)
DNA (972bp) protein (324aa)
Transcriptional regulator, AraC family n=1 Tax=Clostridium sp. M62/1 RepID=D4C6H3_9CLOT
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EFE14161.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
AraC-type DNA-binding domain-containing proteins
L3_079_000G1_scaffold_264_22
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20569..21147
DNA (579bp) protein (193aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=U2DA06_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHO32326.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
conserved hypothetical integral membrane protein TIGR02185
L3_079_000G1_scaffold_264_23
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21144..21884
DNA (741bp) protein (247aa)
Cobalt transport protein n=1 Tax=Clostridium sp. M62/1 RepID=D4C6H6_9CLOT
Cobalt transport protein {ECO:0000313|EMBL:EFE14164.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
ABC-type cobalt transport system, permease component CbiQ and related transporters
L3_079_000G1_scaffold_264_24
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21890..23470
DNA (1581bp) protein (527aa)
ABC transporter, ATP-binding protein n=1 Tax=Clostridium sp. M62/1 RepID=D4C6H7_9CLOT
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFE14165.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
ATPase components of various ABC-type transport systems, contain duplicated ATPase
L3_079_000G1_scaffold_264_25
[Eubacterium] dolichum, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(23406..24398)
DNA (993bp) protein (331aa)
Transcriptional regulator, AraC family n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8R7Z0_9FIRM
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EDP12214.1}; TaxID=428127 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="[Eubacterium] dolichum DSM 3991.;"
AraC-type DNA-binding domain-containing proteins
L3_079_000G1_scaffold_264_26
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

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24598..25182
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8W2H3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOQ38741.1}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
conserved hypothetical integral membrane protein TIGR02185
L3_079_000G1_scaffold_264_27
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25182..25922
DNA (741bp) protein (247aa)
Uncharacterized protein n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8W1A1_9CLOT
ABC-type cobalt transport system, permease component CbiQ and related transporters
Uncharacterized protein {ECO:0000313|EMBL:EOQ38740.1}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
L3_079_000G1_scaffold_264_28
[Eubacterium] dolichum, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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25939..27420
DNA (1482bp) protein (494aa)
ABC transporter, ATP-binding protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8R7Z3_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDP12217.1}; TaxID=428127 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="[Eubacterium] dolichum DSM 3991.;"
ATPase components of various ABC-type transport systems, contain duplicated ATPase
L3_079_000G1_scaffold_264_29
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27647..28261
DNA (615bp) protein (205aa)
Transcriptional regulator, TetR family n=1 Tax=Clostridium sp. D5 RepID=F0Z521_9CLOT
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EGB90903.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
transcriptional regulator, TetR family
L3_079_000G1_scaffold_264_30
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28420..30174
DNA (1755bp) protein (585aa)
ABC-type multidrug transport system, ATPase and permease components n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K095_9FIRM
ABC-type multidrug transport system, ATPase and permease components
ABC-type multidrug transport system, ATPase and permease components {ECO:0000313|EMBL:CBK99694.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
Displaying items 1-30 of 79 in total

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