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L3_079_000G1_scaffold_341

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Displaying items 1-30 of 80 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_000G1_scaffold_341_1
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11..388
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2RGD0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK49787.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
hypothetical protein
L3_079_000G1_scaffold_341_2
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

422..970
DNA (549bp) protein (183aa)
Replication initiator protein A n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2R833_9FIRM
Replication initiator protein A {ECO:0000313|EMBL:ERK49788.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
Replication initiator protein A (RepA) N-terminus.
L3_079_000G1_scaffold_341_3
Firmicutes bacterium CAG:102, Firmicutes, Bacteria

Not on your lists

967..1779
DNA (813bp) protein (271aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:102 RepID=R5AE32_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX40973.1}; TaxID=1262998 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:102.;"
hypothetical protein
L3_079_000G1_scaffold_341_4
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1895..2116
DNA (222bp) protein (74aa)
Relaxasome subunit MobC n=1 Tax=Clostridium cf. saccharolyticum K10 RepID=D6DI63_CLOSC
relaxasome subunit MobC
Relaxasome subunit MobC {ECO:0000313|EMBL:CBK77387.1}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
L3_079_000G1_scaffold_341_5
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2538..4256
DNA (1719bp) protein (573aa)
MobA/MobL family protein n=2 Tax=root RepID=C7GG50_9FIRM
MobA/MobL family protein {ECO:0000313|EMBL:EEU99188.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
plasmid mobilization system relaxase
L3_079_000G1_scaffold_341_6
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

Not on your lists

comp(4323..5078)
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RD26_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC43204.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
hypothetical protein
L3_079_000G1_scaffold_341_7
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

Not on your lists

comp(5075..6139)
DNA (1065bp) protein (355aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RJH2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC43206.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
HmuU protein
L3_079_000G1_scaffold_341_8
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

Not on your lists

comp(6160..7266)
DNA (1107bp) protein (369aa)
ABC-type Fe3+-hydroxamate transport system periplasmic component n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6R2V1_9FIRM
ABC-type Fe3+-hydroxamate transport system periplasmic component {ECO:0000313|EMBL:CDC43208.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
ABC-type Fe3+-hydroxamate transport system, periplasmic component
L3_079_000G1_scaffold_341_9
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7272..8066)
DNA (795bp) protein (265aa)
glycyl-radical enzyme activating protein family (EC:1.97.1.4)
Glycyl-radical enzyme activating protein family n=2 Tax=Clostridiales RepID=D4M2Z7_9FIRM
Glycyl-radical enzyme activating protein family {ECO:0000313|EMBL:CDC16431.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L3_079_000G1_scaffold_341_10
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8136..10670)
DNA (2535bp) protein (845aa)
Formate C-acetyltransferase {ECO:0000313|EMBL:EDN78607.1}; EC=2.3.1.54 {ECO:0000313|EMBL:EDN78607.1};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
glycerol dehydratase, cobalamin-independent, large subunit (EC:2.3.1.54 4.2.1.30)
Formate C-acetyltransferase n=3 Tax=Lachnospiraceae RepID=A7B0E1_RUMGN
L3_079_000G1_scaffold_341_11
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11123..11665)
DNA (543bp) protein (181aa)
Anaerobic ribonucleoside-triphosphate reductase-activating protein {ECO:0000256|PIRNR:PIRNR000368}; EC=1.97.1.- {ECO:0000256|PIRNR:PIRNR000368};; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
anaerobic ribonucleoside-triphosphate reductase activating protein (EC:1.97.1.4)
Anaerobic ribonucleoside-triphosphate reductase-activating protein n=3 Tax=Clostridiales RepID=F3ARI0_9FIRM
L3_079_000G1_scaffold_341_12
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11682..13841)
DNA (2160bp) protein (720aa)
Anaerobic ribonucleoside-triphosphate reductase {ECO:0000313|EMBL:EDK25462.1}; EC=1.17.4.2 {ECO:0000313|EMBL:EDK25462.1};; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
anaerobic ribonucleoside-triphosphate reductase (EC:1.17.4.2)
Anaerobic ribonucleoside-triphosphate reductase n=4 Tax=Lachnospiraceae RepID=A5KJF9_9FIRM
L3_079_000G1_scaffold_341_13
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14096..14266
DNA (171bp) protein (57aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8BKP1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD15733.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
Ribbon-helix-helix protein, copG family.
L3_079_000G1_scaffold_341_14
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14322..15161)
DNA (840bp) protein (280aa)
Peptidase, S8/S53 family {ECO:0000313|EMBL:EDK24492.1}; EC=3.4.21.- {ECO:0000313|EMBL:EDK24492.1};; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
Peptidase, S8/S53 family n=1 Tax=Ruminococcus torques ATCC 27756 RepID=A5KLW7_9FIRM
Subtilisin-like serine proteases
L3_079_000G1_scaffold_341_15
Fusobacterium ulcerans, Fusobacterium, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

15432..15824
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Fusobacterium ulcerans ATCC 49185 RepID=V9HD47_9FUSO
Uncharacterized protein {ECO:0000313|EMBL:EFS25642.1}; TaxID=469617 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium.;" source="Fusobacterium ulcerans ATCC 49185.;"
D-lactate dehydrogenase
L3_079_000G1_scaffold_341_16
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15831..17054)
DNA (1224bp) protein (408aa)
Pyrophosphate--fructose 6-phosphate 1-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_01978}; EC=2.7.1.90 {ECO:0000256|HAMAP-Rule:MF_01978};; 6-phosphofructokinase, pyrophosphate dependent {ECO:0000256|HAMAP-Rule:MF_01978}; PPi-dependent phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_01978}; Pyrophosphate-dependent 6-phosphofructose-1-kinase {ECO:0000256|HAMAP-Rule:MF_01978}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
6-phosphofructokinase (EC:2.7.1.11)
Phosphofructokinase n=5 Tax=Clostridiales RepID=A5KLW8_9FIRM
L3_079_000G1_scaffold_341_17
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17206..18222
DNA (1017bp) protein (339aa)
Glycosyltransferase, group 2 family protein {ECO:0000313|EMBL:EDY31917.1}; EC=2.4.-.- {ECO:0000313|EMBL:EDY31917.1};; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Glycosyltransferase, group 2 family protein n=2 Tax=Ruminococcus lactaris RepID=B5CS91_9FIRM
Glycosyltransferases involved in cell wall biogenesis
L3_079_000G1_scaffold_341_18
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18467..19660)
DNA (1194bp) protein (398aa)
phosphoribosylamine--glycine ligase (EC:6.3.4.13)
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138, ECO:0000313|EMBL:CBL25326.1}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138, ECO:0000313|EMBL:CBL25326.1};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; Phosphoribosylglycinamide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
Phosphoribosylamine--glycine ligase n=1 Tax=Ruminococcus torques L2-14 RepID=D4M264_9FIRM
L3_079_000G1_scaffold_341_19
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19673..20341)
DNA (669bp) protein (223aa)
Phosphoribosylglycinamide formyltransferase {ECO:0000256|HAMAP-Rule:MF_01930}; EC=2.1.2.2 {ECO:0000256|HAMAP-Rule:MF_01930};; 5'-phosphoribosylglycinamide transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; GAR transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase (EC:2.1.2.2)
Phosphoribosylglycinamide formyltransferase n=4 Tax=Lachnospiraceae RepID=A5KLU9_9FIRM
L3_079_000G1_scaffold_341_20
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20335..21360)
DNA (1026bp) protein (342aa)
Phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370}; EC=6.3.3.1 {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370};; AIR synthase {ECO:0000256|HAMAP-Rule:MF_00741}; AIRS {ECO:0000256|HAMAP-Rule:MF_00741}; Phosphoribosyl-aminoimidazole synthetase {ECO:0000256|HAMAP-Rule:MF_00741}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
phosphoribosylaminoimidazole synthetase (EC:6.3.3.1)
Phosphoribosylformylglycinamidine cyclo-ligase n=3 Tax=Clostridiales RepID=E5XHV3_9FIRM
L3_079_000G1_scaffold_341_21
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21433..21942)
DNA (510bp) protein (170aa)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
5-(carboxyamino)imidazole ribonucleotide mutase (EC:4.1.1.21)
N5-carboxyaminoimidazole ribonucleotide mutase n=5 Tax=Clostridiales RepID=E5XHV2_9FIRM
L3_079_000G1_scaffold_341_22
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21930..24077)
DNA (2148bp) protein (716aa)
Putative uncharacterized protein n=2 Tax=unclassified Lachnospiraceae RepID=E5XHV1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFV19102.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
Leucyl aminopeptidase (aminopeptidase T)
L3_079_000G1_scaffold_341_23
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24077..24451)
DNA (375bp) protein (125aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=B5CLN5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD24463.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
hypothetical protein
L3_079_000G1_scaffold_341_24
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24435..24899)
DNA (465bp) protein (155aa)
VanZ family protein n=3 Tax=unclassified Lachnospiraceae RepID=E5XHU9_9FIRM
VanZ family protein {ECO:0000313|EMBL:EFV19100.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
Glycopeptide antibiotics resistance protein
L3_079_000G1_scaffold_341_25
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25042..25191)
DNA (150bp) protein (50aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=A5KLV5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG87283.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
hypothetical protein
L3_079_000G1_scaffold_341_26
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25205..25885)
DNA (681bp) protein (227aa)
Orotate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216328}; Short=OPRT {ECO:0000256|HAMAP-Rule:MF_01208};; Short=OPRTase {ECO:0000256|HAMAP-Rule:MF_01208};; EC=2.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216337};; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
orotate phosphoribosyltransferase (EC:2.4.2.10)
Orotate phosphoribosyltransferase n=5 Tax=Clostridiales RepID=A5KLV6_9FIRM
L3_079_000G1_scaffold_341_27
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26060..26962)
DNA (903bp) protein (301aa)
Dihydroorotate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00224}; Short=DHOD {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHODase {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHOdehase {ECO:0000256|HAMAP-Rule:MF_00224};; EC=1.3.-.- {ECO:0000256|HAMAP-Rule:MF_00224};; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
dihydroorotate dehydrogenase (subfamily 1) family protein (EC:1.3.98.1)
Dihydroorotate dehydrogenase n=2 Tax=Lachnospiraceae RepID=F7JLH3_9FIRM
L3_079_000G1_scaffold_341_28
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26962..27744)
DNA (783bp) protein (261aa)
Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6P9F0_9FIRM
2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases
Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit {ECO:0000256|HAMAP-Rule:MF_01211}; Dihydroorotate oxidase B, electron transfer subunit {ECO:0000256|HAMAP-Rule:MF_01211}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L3_079_000G1_scaffold_341_29
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27784..28710)
DNA (927bp) protein (309aa)
Orotidine 5'-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215}; EC=4.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01215};; OMP decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
orotidine 5'-phosphate decarboxylase, subfamily 2 (EC:4.1.1.23)
Orotidine 5'-phosphate decarboxylase n=2 Tax=Ruminococcus lactaris RepID=B5CLM9_9FIRM
L3_079_000G1_scaffold_341_30
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28928..29434)
DNA (507bp) protein (169aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus torques L2-14 RepID=D4M5D2_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EGX74052.1}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
Displaying items 1-30 of 80 in total

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