ggKbase home page

L3_079_000G1_scaffold_359

Search features with annotation key words

Displaying items 1-30 of 54 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_000G1_scaffold_359_1
Tannerella sp. CAG:118, Tannerella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(1..4143)
DNA (4143bp) protein (1381aa)
hypothetical protein n=1 Tax=Alistipes sp. AP11 RepID=UPI0002ECCD1A
Uncharacterized protein {ECO:0000313|EMBL:CCY37610.1}; TaxID=1262978 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Tannerella; environmental samples.;" source="Tannerella sp. CAG:118.;"
alpha-N-acetylglucosaminidase
L3_079_000G1_scaffold_359_2
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4600..5619)
DNA (1020bp) protein (340aa)
GPD1; Glyceraldehyde-3-phosphate dehydrogenase 1 (EC:1.2.1.12)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
Glyceraldehyde-3-phosphate dehydrogenase, type I n=1 Tax=Clostridium sp. MSTE9 RepID=J0N901_9CLOT
L3_079_000G1_scaffold_359_3
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5746..6615)
DNA (870bp) protein (290aa)
Uncharacterized protein n=1 Tax=Clostridium sp. MSTE9 RepID=J1H6U5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EJF41008.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
hypothetical protein
L3_079_000G1_scaffold_359_4
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6776..8143)
DNA (1368bp) protein (456aa)
Citrate synthase n=2 Tax=Clostridium RepID=A7VPM9_9CLOT
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
Citrate synthase
L3_079_000G1_scaffold_359_5
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8434..9414
DNA (981bp) protein (327aa)
Stage II sporulation protein D n=1 Tax=Clostridium sp. MSTE9 RepID=J0N916_9CLOT
Stage II sporulation protein D {ECO:0000313|EMBL:EJF41042.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
stage II sporulation protein D
L3_079_000G1_scaffold_359_6
unknown

Not on your lists

comp(9505..10005)
DNA (501bp) protein (167aa)

This feature has no annotations

L3_079_000G1_scaffold_359_7
Eubacterium limosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10236..12872)
DNA (2637bp) protein (879aa)
Uncharacterized protein n=1 Tax=Eubacterium limosum (strain KIST612) RepID=E3GQ74_EUBLK
Uncharacterized protein {ECO:0000313|EMBL:ADO39123.1}; TaxID=903814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium limosum (strain KIST612).;"
hypothetical protein
L3_079_000G1_scaffold_359_8
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13145..14614)
DNA (1470bp) protein (490aa)
Polysaccharide deacetylase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0E9R5_9CLOT
Polysaccharide deacetylase {ECO:0000313|EMBL:EEG31830.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
polysaccharide deacetylase
L3_079_000G1_scaffold_359_9
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14777..15487)
DNA (711bp) protein (237aa)
ABC transporter, ATP-binding protein n=1 Tax=Clostridium sp. MSTE9 RepID=J0NC37_9CLOT
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EJF42192.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
amino acid/amide ABC transporter ATP-binding protein 2, HAAT family (TC 3.A.1.4.-)
L3_079_000G1_scaffold_359_10
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15492..16253)
DNA (762bp) protein (254aa)
Branched-chain amino acid ABC transporter n=1 Tax=Clostridium sp. MSTE9 RepID=J0X0P8_9CLOT
Branched-chain amino acid ABC transporter {ECO:0000313|EMBL:EJF42141.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
ABC transporter
L3_079_000G1_scaffold_359_11
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16257..17234)
DNA (978bp) protein (326aa)
Branched-chain amino acid ABC transporter, permease protein n=1 Tax=Clostridium sp. MSTE9 RepID=J0NC55_9CLOT
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:EJF42217.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
hypothetical protein
L3_079_000G1_scaffold_359_12
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17247..18128)
DNA (882bp) protein (294aa)
Branched-chain amino acid ABC transporter, permease protein n=1 Tax=Clostridium sp. MSTE9 RepID=J0N5S8_9CLOT
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:EJF42174.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
livH1; high-affinity branched-chain amino acid ABC transporter system permease LivH
L3_079_000G1_scaffold_359_13
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18253..19431)
DNA (1179bp) protein (393aa)
amino acid-binding protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI00037B56B0
Receptor family ligand-binding protein {ECO:0000313|EMBL:EJF42180.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
hypothetical protein
L3_079_000G1_scaffold_359_14
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19889..21532)
DNA (1644bp) protein (548aa)
Putative uncharacterized protein n=1 Tax=Clostridium hathewayi WAL-18680 RepID=G5ID11_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHI60576.1}; TaxID=742737 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi WAL-18680.;"
dppE; dipeptide-binding protein DppE
L3_079_000G1_scaffold_359_15
Lachnospiraceae bacterium 28-4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21644..22612)
DNA (969bp) protein (323aa)
Oligopeptide/dipeptide ABC transporter, ATP-binding protein domain n=1 Tax=Lachnospiraceae bacterium 28-4 RepID=R9JMX5_9FIRM
Oligopeptide/dipeptide ABC transporter, ATP-binding protein domain {ECO:0000313|EMBL:EOS32497.1}; TaxID=397287 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 28-4.;"
oligopeptide/dipeptide ABC transporter ATP-binding protein
L3_079_000G1_scaffold_359_16
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22609..23631)
DNA (1023bp) protein (341aa)
Oligopeptide/dipeptide ABC transporter n=3 Tax=Clostridium symbiosum RepID=E7GTJ5_CLOSY
Oligopeptide ABC transporter, ATP-binding protein OppD {ECO:0000313|EMBL:ERI73537.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
ABC transporter ATPase subunit
L3_079_000G1_scaffold_359_17
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23644..24702)
DNA (1059bp) protein (353aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RTK6_9FIRM
Peptide ABC transporter permease {ECO:0000313|EMBL:KJF40111.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
ABC transporter permease subunit
L3_079_000G1_scaffold_359_18
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24721..25638)
DNA (918bp) protein (306aa)
ABC transporter, permease protein n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LCW4_9FIRM
ABC transporter, permease protein {ECO:0000313|EMBL:EET61447.1}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
ABC transporter permease subunit
L3_079_000G1_scaffold_359_19
Thermoanaerobacterium xylanolyticum, Thermoanaerobacterium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26280..26780)
DNA (501bp) protein (167aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Thermoanaerobacterium xylanolyticum (strain ATCC 49914 / DSM 7097 / LX-11) RepID=F6BJP4_THEXL
ECF subfamily RNA polymerase sigma-24 subunit
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEF17990.1}; TaxID=858215 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Thermoanaerobacterium.;" source="Thermoanaerobacterium xylanolyticum (strain ATCC 49914 / DSM 7097 /; LX-11).;"
L3_079_000G1_scaffold_359_20
Ethanoligenens harbinense, Ethanoligenens, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27019..27495)
DNA (477bp) protein (159aa)
PTS system, glucose subfamily, IIA subunit n=1 Tax=Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) RepID=E6U2K0_ETHHY
PTS system glucose subfamily transporter subunit IIA
PTS system, glucose subfamily, IIA subunit {ECO:0000313|EMBL:ADU26291.1}; TaxID=663278 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ethanoligenens.;" source="Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033; / YUAN-3).;"
L3_079_000G1_scaffold_359_21
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27754..29205)
DNA (1452bp) protein (484aa)
PTS system, N-acetylglucosamine-specific IIBC component {ECO:0000313|EMBL:EDS10860.1}; EC=2.7.1.69 {ECO:0000313|EMBL:EDS10860.1};; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
PTS system, N-acetylglucosamine-specific IIBC component n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PCA5_9FIRM
PTS system N-acetylglucosamine-specific transporter subunit IIBC
L3_079_000G1_scaffold_359_22
Ruminococcus sp. CAG:90, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29270..30919)
DNA (1650bp) protein (550aa)
phosphoenolpyruvate--protein phosphotransferase (EC:2.7.3.9)
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000256|PIRNR:PIRNR000732}; EC=2.7.3.9 {ECO:0000256|PIRNR:PIRNR000732};; Phosphotransferase system, enzyme I {ECO:0000256|PIRNR:PIRNR000732}; TaxID=1262968 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:90.;"
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI00037A9B52
L3_079_000G1_scaffold_359_23
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31400..34009)
DNA (2610bp) protein (870aa)
Bacterial Ig-like domain, group 2 protein n=1 Tax=Clostridium sp. MSTE9 RepID=J1H6V0_9CLOT
Bacterial Ig-like domain, group 2 protein {ECO:0000313|EMBL:EJF41013.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
L3_079_000G1_scaffold_359_24
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34364..35665)
DNA (1302bp) protein (434aa)
Uncharacterized protein n=1 Tax=Clostridium leptum CAG:27 RepID=R6N2G0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC05235.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
L3_079_000G1_scaffold_359_25
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35686..37461)
DNA (1776bp) protein (592aa)
MORN repeat protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VTI7_9CLOT
MORN repeat protein {ECO:0000313|EMBL:EDO61483.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
hypothetical protein
L3_079_000G1_scaffold_359_26
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(37739..37984)
DNA (246bp) protein (82aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=J1H600_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EJF41005.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
L3_079_000G1_scaffold_359_27
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

38131..38634
DNA (504bp) protein (168aa)
Putative tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
Putative tRNA (cytidine(34)-2'-O)-methyltransferase n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I731_9FIRM
hypothetical protein
L3_079_000G1_scaffold_359_28
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

38768..39964
DNA (1197bp) protein (399aa)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
pgk; Phosphoglycerate kinase (EC:2.7.2.3)
Phosphoglycerate kinase n=1 Tax=Clostridium sp. MSTE9 RepID=J0N2N2_9CLOT
L3_079_000G1_scaffold_359_29
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

40080..40850
DNA (771bp) protein (257aa)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517};; Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
tpiA; Triosephosphate isomerase (EC:5.3.1.1)
Triosephosphate isomerase n=2 Tax=Clostridium RepID=A7VRE5_9CLOT
L3_079_000G1_scaffold_359_30
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

40893..42413
DNA (1521bp) protein (507aa)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058362}; Short=BPG-independent PGAM {ECO:0000256|HAMAP-Rule:MF_01038};; Short=Phosphoglyceromutase {ECO:0000256|HAMAP-Rule:MF_01038};; Short=iPGM {ECO:0000256|HAMAP-Rule:MF_01038};; EC=5.4.2.12 {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058367};; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
2,3-bisphosphoglycerate-independent phosphoglycerate mutase n=1 Tax=Clostridium leptum CAG:27 RepID=R6MZT3_9CLOT
gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
Displaying items 1-30 of 54 in total

View Taxonomy