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L3_079_000G1_scaffold_390

Search features with annotation key words

Displaying items 1-30 of 59 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_000G1_scaffold_390_1
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(869..1492)
DNA (624bp) protein (208aa)
Colicin V production protein n=3 Tax=Clostridium RepID=D6DE75_CLOSC
Colicin V production protein.
Colicin V production protein {ECO:0000313|EMBL:CBK75999.1}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
L3_079_000G1_scaffold_390_2
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1619..2446)
DNA (828bp) protein (276aa)
Cof-like hydrolase n=2 Tax=Clostridium RepID=D4CBP4_9CLOT
Cof-like hydrolase {ECO:0000313|EMBL:EFE12640.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
HAD-superfamily hydrolase, subfamily IIB
L3_079_000G1_scaffold_390_3
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2563..5076)
DNA (2514bp) protein (838aa)
Tetratricopeptide repeat protein n=3 Tax=Clostridium RepID=D4CBP5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CBK75997.1}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
hypothetical protein
L3_079_000G1_scaffold_390_4
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5119..5718)
DNA (600bp) protein (200aa)
Recombination protein RecR n=3 Tax=Clostridium RepID=D6DE72_CLOSC
recombination protein RecR
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
L3_079_000G1_scaffold_390_5
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5720..6085)
DNA (366bp) protein (122aa)
Nucleoid-associated protein CLOM621_06826 n=2 Tax=Clostridium RepID=D4CBP7_9CLOT
Nucleoid-associated protein BN500_00613 {ECO:0000256|HAMAP-Rule:MF_00274}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
hypothetical protein
L3_079_000G1_scaffold_390_6
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6211..7878)
DNA (1668bp) protein (556aa)
DNA polymerase III, subunits gamma and tau {ECO:0000313|EMBL:CBK75995.1}; EC=2.7.7.7 {ECO:0000313|EMBL:CBK75995.1};; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
DNA polymerase III, subunits gamma and tau (EC:2.7.7.7)
DNA polymerase III, subunits gamma and tau n=3 Tax=Clostridium RepID=D6DE71_CLOSC
L3_079_000G1_scaffold_390_7
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7909..8991)
DNA (1083bp) protein (361aa)
6-phosphofructokinase (EC:2.7.1.11)
6-phosphofructokinase n=4 Tax=Clostridiales RepID=D4MPJ9_9FIRM
Phosphofructokinase {ECO:0000313|EMBL:EFE12645.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
L3_079_000G1_scaffold_390_8
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9316..9630
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Dorea sp. 5-2 RepID=R9N8P3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS79483.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
Transposase and inactivated derivatives
L3_079_000G1_scaffold_390_9
butyrate-producing bacterium SM4/1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9770..10555
DNA (786bp) protein (262aa)
Predicted DNA-binding proteins n=1 Tax=butyrate-producing bacterium SM4/1 RepID=D4MPJ8_9FIRM
Predicted DNA-binding proteins
Predicted DNA-binding proteins {ECO:0000313|EMBL:CBL35684.1}; TaxID=245012 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SM4/1.;"
L3_079_000G1_scaffold_390_10
butyrate-producing bacterium SM4/1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10586..10834
DNA (249bp) protein (83aa)
ParA/MinD ATPase like n=2 Tax=Clostridiales RepID=D4MPJ7_9FIRM
ParA/MinD ATPase like.
ParA/MinD ATPase like {ECO:0000313|EMBL:CBL35683.1}; TaxID=245012 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SM4/1.;"
L3_079_000G1_scaffold_390_11
unknown

Not on your lists

comp(10774..10998)
DNA (225bp) protein (75aa)

This feature has no annotations

L3_079_000G1_scaffold_390_12
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11437..13170)
DNA (1734bp) protein (578aa)
ABC transporter ATP-binding protein n=1 Tax=Clostridium sp. CAG:149 RepID=R5M6K5_9CLOT
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CCY80871.1}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
ABC-type multidrug transport system, ATPase and permease components
L3_079_000G1_scaffold_390_13
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13172..14944)
DNA (1773bp) protein (591aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:149 RepID=R5M6U7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY80872.1}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
ABC-type multidrug transport system, ATPase and permease components
L3_079_000G1_scaffold_390_14
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15521..16033)
DNA (513bp) protein (171aa)
Transcriptional regulator TetR family n=1 Tax=Clostridium sp. CAG:149 RepID=R5LNV5_9CLOT
Transcriptional regulator TetR family {ECO:0000313|EMBL:CCY80873.1}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
transcriptional regulator, TetR family
L3_079_000G1_scaffold_390_15
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16943..17482)
DNA (540bp) protein (180aa)
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
Cytidine and deoxycytidylate deaminase zinc-binding region n=2 Tax=Clostridium RepID=D4CBQ1_9CLOT
Cytosine/adenosine deaminases
L3_079_000G1_scaffold_390_16
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17987..18682
DNA (696bp) protein (232aa)
Anaerobic ribonucleoside-triphosphate reductase activating protein {ECO:0000313|EMBL:EFE12649.1}; EC=1.97.-.- {ECO:0000313|EMBL:EFE12649.1};; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
anaerobic ribonucleoside-triphosphate reductase activating protein (EC:1.97.1.4)
Anaerobic ribonucleoside-triphosphate reductase activating protein n=2 Tax=Clostridium RepID=D4CBQ4_9CLOT
L3_079_000G1_scaffold_390_17
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18695..20407)
DNA (1713bp) protein (571aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=D4CBQ5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CBK75990.1}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
hypothetical protein
L3_079_000G1_scaffold_390_18
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20966..23164)
DNA (2199bp) protein (733aa)
Glycosidases (EC:3.2.1.20)
Glycosidases n=3 Tax=Clostridium RepID=D6DE64_CLOSC
Alpha amylase, catalytic domain protein {ECO:0000313|EMBL:EFE12653.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
L3_079_000G1_scaffold_390_19
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23632..25479)
DNA (1848bp) protein (616aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
ATP-dependent metalloprotease FtsH (EC:3.6.4.3)
ATP-dependent zinc metalloprotease FtsH n=2 Tax=Clostridium RepID=R5MM01_9CLOT
L3_079_000G1_scaffold_390_20
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25492..26016)
DNA (525bp) protein (175aa)
hypoxanthine phosphoribosyltransferase (EC:2.4.2.8)
Hypoxanthine phosphoribosyltransferase n=1 Tax=Clostridium sp. CAG:149 RepID=R5ML91_9CLOT
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:CCY86006.1}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
L3_079_000G1_scaffold_390_21
butyrate-producing bacterium SM4/1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26009..27403)
DNA (1395bp) protein (465aa)
tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain (EC:6.3.4.-)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=245012 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SM4/1.;"
tRNA(Ile)-lysidine synthase n=1 Tax=butyrate-producing bacterium SM4/1 RepID=D4MP94_9FIRM
L3_079_000G1_scaffold_390_22
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27501..28910)
DNA (1410bp) protein (470aa)
Stage II sporulation protein E (SpoIIE). (EC:3.1.3.16)
Stage II sporulation protein E (SpoIIE) n=4 Tax=Clostridiales RepID=D6DE61_CLOSC
Putative stage II sporulation protein E {ECO:0000313|EMBL:EFE12657.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
L3_079_000G1_scaffold_390_23
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29052..29372)
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:149 RepID=R5ML85_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY85996.1}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
Septum formation initiator.
L3_079_000G1_scaffold_390_24
butyrate-producing bacterium SM4/1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29430..29756)
DNA (327bp) protein (109aa)
Spore cortex protein YabQ (Spore_YabQ) n=3 Tax=Clostridiales RepID=D4MP97_9FIRM
Spore cortex protein YabQ (Spore_YabQ).
Spore cortex protein YabQ (Spore_YabQ) {ECO:0000313|EMBL:CBL35583.1}; TaxID=245012 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SM4/1.;"
L3_079_000G1_scaffold_390_25
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29767..30051)
DNA (285bp) protein (95aa)
Sporulation protein YabP n=4 Tax=Clostridiales RepID=D4MP98_9FIRM
sporulation protein YabP
Sporulation protein YabP {ECO:0000313|EMBL:CCY85994.1}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
L3_079_000G1_scaffold_390_26
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30114..30353)
DNA (240bp) protein (80aa)
Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) n=4 Tax=Clostridiales RepID=D4MP99_9FIRM
Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)
Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) {ECO:0000313|EMBL:CCY85993.1}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
L3_079_000G1_scaffold_390_27
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30358..30633)
DNA (276bp) protein (92aa)
Bacterial nucleoid DNA-binding protein n=3 Tax=Clostridium RepID=D6DE57_CLOSC
Bacterial nucleoid DNA-binding protein
DNA-binding protein HU {ECO:0000313|EMBL:EFE12662.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
L3_079_000G1_scaffold_390_28
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30777..31235)
DNA (459bp) protein (153aa)
MazG family protein n=2 Tax=Clostridium RepID=D4CBR7_9CLOT
MazG family protein {ECO:0000313|EMBL:CCY85991.1}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain
L3_079_000G1_scaffold_390_29
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31431..31979)
DNA (549bp) protein (183aa)
Transcriptional regulator, AbrB family n=3 Tax=Clostridium RepID=D6DE55_CLOSC
transcriptional regulator, AbrB family
Transcriptional regulator, AbrB family {ECO:0000313|EMBL:CBK75979.1}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
L3_079_000G1_scaffold_390_30
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32143..33627)
DNA (1485bp) protein (495aa)
Na+/H+ antiporter family protein n=1 Tax=Clostridium sp. M62/1 RepID=D4CBY2_9CLOT
Na+/H+ antiporter family protein {ECO:0000313|EMBL:EFE12728.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
transporter, NhaC family (TC 2.A.35)
Displaying items 1-30 of 59 in total

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